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All sourcesNASA NTRSDOE OSTI
DOE OSTI2019

Genetic Analysis of the Full-Length gag Gene from the Earliest Korean Subclade B of HIV-1: An Outbreak among Korean Hemophiliacs

We determined the earliest full-length HIV-1 gag gene sequences in 110 patients with HIV-1, including 20 hemophiliacs (HPs) and 90 local controls (LCs). The gag gene from stored sera was amplified using RT-PCR, and was subjected to direct sequencing. Phylogenetic analysis indicated that 94 and 16 sequences belonged to the Korean subclade of HIV-1 subtype B (KSB) and subtype B, respectively. A total of 12 signature pattern amino acids were found within the KSB, distinct from the worldwide consensus of subtype B. Within the KSB, the gag gene sequences from donors O and P and those from the 20 HPs comprised two subclusters. In particular, sequences from donor O strongly clustered with those of eight HPs. Moreover, signature pattern analysis indicated that 14 signature nucleotides were shared between the HPs and LCs within KSB (p < 0.01). Among the 14 nucleotides, positions 9 and 5 belonged to clusters O and P, respectively. In conclusion, signature pattern analysis for the gag gene revealed 12 signature pattern residues within the KSB and also confirmed the previous conclusion that the 20 HPs were infected with viruses due to incompletely inactivated clotting factor IX. This study is the first genetic analysis of the HIV-1 gag gene in Korea.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2024

DFT Analysis of the Binding of Rare Earth Nitrates at Internal and External Surfaces of MCM-22

MCM-22-type zeolites constitute a well-characterized tunable class of aluminosilicates suitable for elucidating the fundamental aspects of the binding of rare earth elements (REEs) in layered materials. Starting from the pure silica version ITQ-1 with a unit cell of Si 72 O 144 , a model for periodic bulk crystalline MCM-22 with a finite Al concentration is provided by replacing a Si atom with an Al atom in the unit cell at suitable tetrahedral sites near an internal pore surface. Then, a H atom is added to an O atom bridging Si and Al atoms to create a Brønsted acid site (BAS). There are no internal silanol groups in this bulk model. To generate a model for an external surface, we adopt the fully hydroxylated surface structure of a layer within the ITQ-1 precursor with two silanols per lateral unit cell. A BAS on the external surface can be generated by replacing a near-surface Si atom with an Al atom and adding a H atom, as above. The strength of binding at a BAS of REE, X, taken to be present in the solution phase as nitrates, is determined from the energy change in the reaction X(NO 3 ) 3 + ≡Si–{OH}–Al≡ → ≡Si–{OX(NO 3 ) 2 }–Al≡+ HNO 3 . The strength of binding at the silanols is determined similarly. Binding energies are determined from two approaches. The first performs periodic plane-wave density functional theory (DFT) total energy analysis for an entire unit cell of MCM-22. The second utilizes cluster models capturing the local environment of REE binding sites and performs DFT analysis with localized basis sets. The two approaches yield consistent results for Nd, revealing similarly strong binding at either an external or internal BAS, but much weaker binding at a silanol site. This is consistent with the picture deduced from recent experiments. Here, we also comment on binding at Al-bridged siloxane sites, which have been suggested as alternative binding sites to BAS.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
NASA NTRS1985

Method for evaluating wind turbine wake effects on wind farm performance

A method of testing the performance of a cluster of wind turbine units an data analysis equations are presented which together form a simple and direct procedure for determining the reduction in energy output caused by the wake of an upwind turbine. This method appears to solve the problems presented by data scatter and wind variability. Test data from the three-unit Mod-2 wind turbine cluster at Goldendale, Washington, are analyzed to illustrate the application of the proposed method. In this sample case the reduction in energy was found to be about 10 percent when the Mod-2 units were separated a distance equal to seven diameters and winds were below rated.

Neustadter, H. E.↗
DOE OSTI2015

MASS SUBSTRUCTURE IN ABELL 3128

We perform a detailed two-dimensional weak gravitational lensing analysis of the nearby (z = 0.058) galaxy cluster Abell 3128 using deep ugrz imaging from the Dark Energy Camera (DECam). We have designed a pipeline to remove instrumental artifacts from DECam images and stack multiple dithered observations without inducing a spurious ellipticity signal. We develop a new technique to characterize the spatial variation of the point-spread function that enables us to circularize the field to better than 0.5% and thereby extract the intrinsic galaxy ellipticities. By fitting photometric redshifts to sources in the observation, we are able to select a sample of background galaxies for weak-lensing analysis free from low-redshift contaminants. Photometric redshifts are also used to select a high-redshift galaxy subsample with which we successfully isolate the signal from an interloping z = 0.44 cluster. We estimate the total mass of Abell 3128 by fitting the tangential ellipticity of background galaxies with the weak-lensing shear profile of a Navarro–Frenk–White (NFW) halo and also perform NFW fits to substructures detected in the 2D mass maps of the cluster. This study yields one of the highest resolution mass maps of a low-z cluster to date and is the first step in a larger effort to characterize the redshift evolution of mass substructures in clusters.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2022

Search for Spatial Correlations of Neutrinos with Ultra-high-energy Cosmic Rays

For several decades, the origin of ultra-high-energy cosmic rays (UHECRs) has been an unsolved question of high-energy astrophysics. One approach for solving this puzzle is to correlate UHECRs with high-energy neutrinos, since neutrinos are a direct probe of hadronic interactions of cosmic rays and are not deflected by magnetic fields. In this paper, we present three different approaches for correlating the arrival directions of neutrinos with the arrival directions of UHECRs. The neutrino data are provided by the IceCube Neutrino Observatory and ANTARES, while the UHECR data with energies above ∼50 EeV are provided by the Pierre Auger Observatory and the Telescope Array. All experiments provide increased statistics and improved reconstructions with respect to our previous results reported in 2015. The first analysis uses a high-statistics neutrino sample optimized for point-source searches to search for excesses of neutrino clustering in the vicinity of UHECR directions. The second analysis searches for an excess of UHECRs in the direction of the highest-energy neutrinos. The third analysis searches for an excess of pairs of UHECRs and highest-energy neutrinos on different angular scales. None of the analyses have found a significant excess, and previously reported overfluctuations are reduced in significance. Based on these results, we further constrain the neutrino flux spatially correlated with UHECRs.

79 ASTRONOMY AND ASTROPHYSICS↗
NASA NTRS1991

Baade-Wesselink radii for NGC 1866 Cepheids

Radial velocities and CCD photometry suitable for a Baade-Wesselink analysis are now available for six short-period Cepheids (HV12198, HV12199, HV12202, HV12203, HV12204, and V4) in the LMC cluster NGC 1866. As a prerequisite for such an analysis, O-C diagrams have been constructed and examined for seven of the NGC 1866 Cepheids (HV12197, HV12198, HV12199, HV12200, HV12202, HV12203, and HV12204), yielding improved periods and estimates of the rate of period change in these coeval variables. One star, HV12198, shows possible evidence for period change, but the phase mismatch due to that change is small enough to have negligible effect on its Baade-Wesselink radius. The computed radii are in good agreement with the Baade-Wesselink, theoretical and cluster/association period-radius relations of Fernie (1984) and the Galactic relation of Coulson and Caldwell (1989). The Flower (1977) color-effective temperature relation and the Becker et al. (1977) mass-luminosity relation lead to mean masses of 4.9 + or - 0.5 solar masses and 4.6 + or - 0.5 solar masses for the respective metallicities of (Y,Z) = (0.0273,0.0016) and (0.026,0.02). Pulsation constants are also computed for these stars.

Cote, Patrick↗
DOE OSTI2019

Dark Energy Survey Year 1 results: validation of weak lensing cluster member contamination estimates from P(z) decomposition

Weak lensing source galaxy catalogues used in estimating the masses of galaxy clusters can be heavily contaminated by cluster members, prohibiting accurate mass calibration. In this study, we test the performance of an estimator for the extent of cluster member contamination based on decomposing the photometric redshift P(z) of source galaxies into contaminating and background components. We perform a full scale mock analysis on a simulated sky survey approximately mirroring the observational properties of the Dark Energy Survey Year One observations (DES Y1), and find excellent agreement between the true number profile of contaminating cluster member galaxies in the simulation and the estimated one. We further apply the method to estimate the cluster member contamination for the DES Y1 redMaPPer cluster mass calibration analysis, and compare the results to an alternative approach based on the angular correlation of weak lensing source galaxies. We find indications that the correlation based estimates are biased by the selection of the weak lensing sources in the cluster vicinity, which does not strongly impact the P(z) decomposition method. Collectively, these benchmarks demonstrate the strength of the P(z) decomposition method in alleviating membership contamination and enabling highly accurate cluster weak lensing studies without broad exclusion of source galaxies, thereby improving the total constraining power of cluster mass calibration via weak lensing.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2019

OpenStudio® Analysis Gem [SWR-07-40]

The OpenStudio® Analysis Gem is used to communicate files to the OpenStudio Distributed Analysis. The purpose of this gem is to generate the analysis.json file, analysis.zip, and communicate with the server to upload the simulations. This gem does not create the cluster. To manage cloud resources use the OpenStudio Analysis Framework Helm Charts.

Long, Nicholas↗
DOE OSTI2024

The Central Role of Oxo Clusters in Zirconium‐Based Esterification Catalysis

Oxo clusters are a unique link between oxide nanocrystals and Metal‐Organic Frameworks (MOFs), representing the limit of downscaling each of the respective crystals. Herein, the superior catalytic activity of clusters, compared to zirconium MOF UiO‐66 and nanocrystals is shown. Focus is on esterification reactions given their general importance in consumer products and the challenge of converting large substrates. Oxo clusters have a higher surface‐to‐volume ratio than nanocrystals, rendering them more active. For large substrates, for example, oleic acid, MOF UiO‐66 has negligible catalytic activity while clusters provide almost quantitative conversion, a fact we ascribe to limited diffusion of large substrates through the MOF pores. Clusters do not suffer from limited mass transfer and we also obtain high conversion in solvent‐free reactions with sterically hindered alcohols (hexanol, 2‐ethyl hexanol, benzyl alcohol, and neopentyl alcohol). The cluster catalyst can be recovered and shows identical activity when reused. The structural integrity of the cluster is confirmed using X‐ray total scattering and pair distribution function analysis. Moreover, when homogeneous zirconium alkoxides are used as catalysts, the same oxo cluster is retrieved, showing that oxo clusters are the active catalytic species, even in previously assumed homogeneously catalyzed reactions.

Pulparayil Mathew, Jikson↗
DOE OSTI2022

The Observed Evolution of the Stellar Mass–Halo Mass Relation for Brightest Central Galaxies

We quantify evolution in the cluster-scale stellar mass–halo mass (SMHM) relation's parameters using 2323 clusters and brightest central galaxies (BCGs) over the redshift range 0.03 ≤ z ≤ 0.60. The precision on the inferred SMHM parameters is improved by including the magnitude gap (m gap ) between the BCG and fourth-brightest cluster member (M14) as a third parameter in the SMHM relation. At fixed halo mass, accounting for m gap , through a stretch parameter, reduces the SMHM relation's intrinsic scatter. To explore this redshift range, we use clusters, BCGs, and cluster members identified using the Sloan Digital Sky Survey C4 and redMaPPer cluster catalogs and the Dark Energy Survey redMaPPer catalog. Through this joint analysis, we detect no systematic differences in BCG stellar mass, m gap , and cluster mass (inferred from richness) between the data sets. We utilize the Pareto function to quantify each parameter's evolution. We confirm prior findings of negative evolution in the SMHM relation's slope (3.5σ), and detect negative evolution in the stretch parameter (4.0σ) and positive evolution in the offset parameter (5.8σ). This observed evolution, combined with the absence of BCG growth, when stellar mass is measured within 50 kpc, suggests that this evolution results from changes in the cluster's m gap . For this to occur, late-term growth must be in the intracluster light surrounding the BCG. We also compare the observed results to IllustrisTNG 300-1 cosmological hydrodynamic simulations and find modest qualitative agreement. However, the simulations lack the evolutionary features detected in the real data.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2018

Correcting for peculiar velocities of Type Ia supernovae in clusters of galaxies

Type Ia supernovae (SNe Ia) are widely used to measure the expansion of the Universe. To perform such measurements the luminosity and cosmological redshift (z) of the SNe Ia have to be determined. The uncertainty on z includes an unknown peculiar velocity, which can be very large for SNe Ia in the virialized cores of massive clusters. We determine which SNe Ia exploded in galaxy clusters using 145 SNe Ia from the Nearby Supernova Factory. We then study how the correction for peculiar velocities of host galaxies inside the clusters improves the Hubble residuals. We found 11 candidates for membership in clusters. We applied the biweight technique to estimate the redshift of a cluster. Then, we used the galaxy cluster redshift instead of the host galaxy redshift to construct the Hubble diagram. For SNe Ia inside galaxy clusters, the dispersion around the Hubble diagram when peculiar velocities are taken into account is smaller compared with a case without peculiar velocity correction, which has a wRMS = 0.130 ± 0.038 mag instead of wRMS = 0.137 ± 0.036 mag. The significance of this improvement is 3.58σ. If we remove the very nearby Virgo cluster member SN2006X ( z < 0.01) from the analysis, the significance decreases to 1.34σ. The peculiar velocity correction is found to be highest for the SNe Ia hosted by blue spiral galaxies. Those SNe Ia have high local specific star formation rates and smaller stellar masses, which is seemingly counter to what might be expected given the heavy concentration of old, massive elliptical galaxies in clusters. As expected, the Hubble residuals of SNe Ia associated with massive galaxy clusters improve when the cluster redshift is taken as the cosmological redshift of the supernova. This fact has to be taken into account in future cosmological analyses in order to achieve higher accuracy for cosmological redshift measurements. We provide an approach to do so.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2014

Radial velocities of three poorly studied clusters and the kinematics of open clusters

We present radial velocities for stars in the field of the open star clusters Berkeley 44, Berkeley 81, and NGC 6802 from spectra obtained using the Wisconsin-Indiana-Yale-NOAO (WIYN) 3.5 m telescope. These clusters are of intermediate age (1-3 Gyr), located within the solar Galactocentric radius, and have no previous radial velocity measurements. We find mean radial velocities of –9.6 ± 3.0 km s{sup –1}, 48.1 ± 2.0 km s{sup –1}, and 12.4 ± 2.8 km s{sup –1} for Be 44, Be 81, and NGC 6802, respectively. We present an analysis of radial velocities of 134 open clusters of a wide range of ages using data obtained in this study and the literature. Assuming the system of clusters rotates about the Galactic center with a constant velocity, we find older clusters exhibit a slower rotation and larger line-of-sight (LOS) velocity dispersion than younger clusters. The gradual decrease in rotational velocity of the cluster system with age is accompanied by a smooth increase in LOS velocity dispersion, which we interpret as the effect of heating on the open cluster system over time.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2015

A UNIVERSAL MODEL FOR HALO CONCENTRATIONS

We present a numerical study of dark matter halo concentrations in ΛCDM and self-similar cosmologies. We show that the relation between concentration, c, and peak height, ν, exhibits the smallest deviations from universality if halo masses are defined with respect to the critical density of the universe. These deviations can be explained by the residual dependence of concentration on the local slope of the matter power spectrum, n, which affects both the normalization and shape of the c-ν relation. In particular, there is no well-defined floor in the concentration values. Instead, the minimum concentration depends on redshift: at fixed ν, halos at higher z experience steeper slopes n, and thus have lower minimum concentrations. We show that the concentrations in our simulations can be accurately described by a universal seven-parameter function of only ν and n. This model matches our ΛCDM results to ≲ 5% accuracy up to z = 6, and matches scale-free Ω{sub m} = 1 models to ≲ 15%. The model also reproduces the low concentration values of Earth-mass halos at z ≈ 30, and thus correctly extrapolates over 16 orders of magnitude in halo mass. The predictions of our model differ significantly from all models previously proposed in the literature at high masses and redshifts. Our model is in excellent agreement with recent lensing measurements of cluster concentrations.

79 ASTRONOMY AND ASTROPHYSICS↗
NASA NTRS2018

Discovery of Activities via Statistical Clustering of Fixation Patterns

Human behavior often consists of a series of distinct activities, each characterized by a unique pattern of interaction with the visual environment. This is true even in a restricted domain, such as a piloting an aircraft, where activities with distinct visual signatures might be things like communicating, navigating, and monitoring. We propose a novel analysis method for gaze-tracking data, to perform blind discovery of these hypothetical activities. The method is in some respects similar to recurrence analysis, but here we compare not individual fixations, but groups of fixations aggregated over a fixed time interval. The duration of this interval is a parameter that we will refer to as delta. We assume that the environment has been divided into a set of N different areas-of-interest (AOIs). For a given interval of time of duration delta, we compute the proportion of time spent fixating each AOI, resulting in an N-dimensional vector. These proportions can be converted to integer counts by multiplying by delta divided by the average fixation duration (another parameter that we fix at 280 milliseconds). We compare different intervals by computing the chi-square statistic. The p-value associated with the statistic is the likelihood of observing the data under the hypothesis that the data in the two intervals were generated by a single process with a single set of probabilities governing the fixation of each AOI. The method has been applied to approximately 100 hours of eye movement data collected from pilots in a high-fidelity B747 flight simulator, and the results have been compared to synthetic data in which the each activity is represented as first-order Markov process with random probabilities assigned to the AOIs. Randomly-generated synthetic activities can require thousands of fixations to be discriminated with statistical significance, while the human data can be clustered using averaging windows of some 10's of seconds, suggesting that the actual activities are much more narrowly focused than random Markov models.

activity analysis↗
DOE OSTI2016

GLOBULAR CLUSTERS INDICATE THAT ULTRA-DIFFUSE GALAXIES ARE DWARFS

We present an analysis of archival HST /ACS imaging in the F475W ( g {sub 475}), F606W ( V {sub 606}), and F814W ( I {sub 814}) bands of the globular cluster (GC) system of a large (3.4 kpc effective radius) ultra-diffuse galaxy (DF17) believed to be located in the Coma Cluster of galaxies. We detect 11 GCs down to the 5 σ completeness limit of the imaging ( I {sub 814} = 27 mag). Correcting for background and our detection limits yields a total population of GCs in this galaxy of 27 ± 5 and a V -band specific frequency S {sub N} = 28 ± 5. Based on comparisons to the GC systems of local galaxies, we show that both the absolute number and the colors of the GC system of DF17 are consistent with the GC system of a dark-matter-dominated dwarf galaxy with virial mass ∼9.0 × 10{sup 10} M {sub ⊙} and a dark-to-stellar mass ratio M {sub vir}/ M {sub star} ∼ 1000. Based on the stellar mass growth of the Milky Way, we show that DF17 cannot be understood as a failed Milky-Way-like system, but is more similar to quenched Large-Magellanic-Cloud-like systems. We find that the mean color of the GC population, g {sub 475}– I {sub 814} = 0.91 ± 0.05 mag, coincides with the peak of the color distribution of intracluster GCs and is also similar to those of the blue GCs in the outer regions of massive galaxies. We suggest that both the intracluster GC population in Coma and the blue peak in the GC populations of massive galaxies may be fed—at least in part—by the disrupted equivalents of systems such as DF17.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2026

H I Depletion Begins Well Beyond the Virial Radius: A FAST Stacking Study of 36 Galaxy Clusters to 5 × R 200

Abstract We present a stacking study of the neutral atomic hydrogen (H i ) content in and around 36 local galaxy clusters at z < 0.07, using a combination of the FAST All Sky H i survey (FASHI) and the extensive spectroscopic catalog mainly from the Dark Energy Spectroscopic Instrument (DESI). We employ spectral stacking techniques to probe the average H i mass and HI-to-stellar mass ratio ( M HI / M * ) for member galaxies down to stellar masses of M * ∼ 10 9 M ⊙ , spanning a projected cluster-centric distance of up to 5 R 200 . Our analysis reveals a pronounced environmental effect; both M HI and M HI / M * decrease steadily toward the cluster center, dropping by ∼0.5 dex on average from the outskirts to the core. Crucially, we find that M HI / M * of galaxies remain lower than the field galaxies even at the 5 R 200 . This provides direct, statistical evidence for substantial gas stripping and preprocessing in the cluster outskirts, likely occurring in infalling groups and large-scale filaments. By further splitting the sample by g − r color, we show that the H i deficiency persists at fixed galaxy color; even the bluest cluster members exhibit ∼0.5 dex lower M HI / M * than field galaxies of similar color, reflecting environmental effects on the cold gas reservoir prior to full optical transformation. The total H i mass within clusters and their outskirts agrees broadly with predictions from cosmological simulations. Our results underscore the critical role of the extended cluster environment in quenching galaxies by depleting their cold gas reservoirs well before they enter the dense cluster core.

Cheng, Cheng [Chinese Academy of Sciences South Am↗
DOE OSTI2024

Identification and characterization of the low molecular mass ferredoxins involved in central metabolism in Heliomicrobium modesticaldum

The homodimeric Type I reaction center (RC) from Heliomicrobium modesticaldum lacks the PsaC subunit found in Photosystem I and instead uses the interpolypeptide [4Fe–4S] cluster F X as the terminal electron acceptor. Our goal was to identify which of the small mobile dicluster ferredoxins encoded by the H. modesticaldum genome are capable of accepting electrons from the heliobacterial RC (HbRC) and pyruvate:ferredoxin oxidoreductase (PFOR), a key metabolic enzyme. Analysis of the genome revealed seven candidates: HM1_1462 (PshB1), HM1_1461 (PshB2), HM1_2505 (Fdx3), HM1_0869 (FdxB), HM1_1043, HM1_0357, and HM1_2767. Heterologous expression in Escherichia coli and studies using time-resolved optical spectroscopy revealed that only PshB1, PshB2, and Fdx3 are capable of accepting electrons from the HbRC and PFOR. Modeling studies using AlphaFold show that only PshB1, PshB2, and Fdx3 should be capable of docking on PFOR at a positively charged patch that overlays a surface-proximal [4Fe–4S] cluster. Proteomic analysis of wild-type and gene deletion strains ΔpshB1, ΔpshB2, ΔpshB1pshB2, and Δfdx3 grown under nitrogen-replete conditions revealed that Fdx3 is undetectable in the wild-type, ΔpshB1, and Δfdx3 strains, but it is present in the ΔpshB2 and ΔpshB1pshB2 strains, implying that Fdx3 may substitute for PshB2. When grown under nitrogen-deplete conditions, Fdx3 is present in the wild-type and all deletion strains except for Δfdx3. None of the knockout strains demonstrated significant impairment during chemotrophic dark growth on pyruvate, photoheterotrophic light growth on pyruvate, or phototrophic growth on acetate+CO 2 , indicating a high degree of redundancy among these three electron transfer proteins. As a result, loss of both PshB1 and PshB2, but not FdxB, resulted in poor growth under N 2 -fixing conditions.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2014

A spectroscopic census in young stellar regions: the σ Orionis cluster

We present a spectroscopic survey of the stellar population of the σ Orionis cluster. We have obtained spectral types for 340 stars. Spectroscopic data for spectral typing come from several spectrographs with similar spectroscopic coverage and resolution. More than half of the stars in our sample are members confirmed by the presence of lithium in absorption, strong Hα in emission or weak gravity-sensitive features. In addition, we have obtained high-resolution (R ∼ 34,000) spectra in the Hα region for 169 stars in the region. Radial velocities were calculated from this data set. The radial velocity distribution for members of the cluster is in agreement with previous work. Analysis of the profile of the Hα line and infrared observations reveals two binary systems or fast rotators that mimic the Hα width expected in stars with accretion disks. On the other hand, there are stars with optically thick disks and narrow Hα profiles not expected in stars with accretion disks. This contribution constitutes the largest homogeneous spectroscopic data set of the σ Orionis cluster to date.

79 ASTRONOMY AND ASTROPHYSICS↗