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At least 1,531 records · Page 85

Structures of CENP-C cupin domains at regional centromeres reveal unique patterns of dimerization and recruitment functions for the inner pocket

We discuss the successful assembly and regulation of the kinetochore are critical for the equal and accurate segregation of genetic material during the cell cycle. CENP-C (centromere protein C), a conserved inner kinetochore component, has been broadly characterized as a scaffolding protein and is required for the recruitment of multiple kinetochore proteins to the centromere. At its C terminus, CENP-C harbors a conserved cupin domain that has an established role in protein dimerization. Although the crystal structure of the Saccharomyces cerevisiae Mif2CENP-C cupin domain has been determined, centromeric organization and kinetochore composition vary greatly between S. cerevisiae (point centromere) and other eukaryotes (regional centromere). Therefore, whether the structural and functional role of the cupin domain is conserved throughout evolution requires investigation. Here, we report the crystal structures of the Schizosaccharomyces pombe and Drosophila melanogaster CENP-C cupin domains at 2.52 and 1.81 Å resolutions, respectively. Although the central jelly roll architecture is conserved among the three determined CENP-C cupin domain structures, the cupin domains from organisms with regional centromeres contain additional structural features that aid in dimerization. Moreover, we found that the S. pombe Cnp3CENP-C jelly roll fold harbors an inner binding pocket that is used to recruit the meiosis-specific protein Moa1. In summary, our results unveil the evolutionarily conserved and unique features of the CENP-C cupin domain and uncover the mechanism by which it functions as a recruitment factor.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

SHOCK-ENHANCED C{sup +} EMISSION AND THE DETECTION OF H{sub 2}O FROM THE STEPHAN'S QUINTET GROUP-WIDE SHOCK USING HERSCHEL

We present the first Herschel spectroscopic detections of the [O I] 63 μm and [C II] 158 μm fine-structure transitions, and a single para-H{sub 2}O line from the 35 × 15 kpc{sup 2} shocked intergalactic filament in Stephan's Quintet. The filament is believed to have been formed when a high-speed intruder to the group collided with a clumpy intergroup gas. Observations with the PACS spectrometer provide evidence for broad (>1000 km s{sup –1}) luminous [C II] line profiles, as well as fainter [O I] 63 μm emission. SPIRE FTS observations reveal water emission from the p-H{sub 2}O (1{sub 11}-0{sub 00}) transition at several positions in the filament, but no other molecular lines. The H{sub 2}O line is narrow and may be associated with denser intermediate-velocity gas experiencing the strongest shock-heating. The [C II]/PAH{sub tot} and [C II]/FIR ratios are too large to be explained by normal photo-electric heating in photodissociation regions. H II region excitation or X-ray/cosmic-ray heating can also be ruled out. The observations lead to the conclusion that a large fraction the molecular gas is diffuse and warm. We propose that the [C II], [O I], and warm H{sub 2} line emission is powered by a turbulent cascade in which kinetic energy from the galaxy collision with the intergalactic medium is dissipated to small scales and low velocities, via shocks and turbulent eddies. Low-velocity magnetic shocks can help explain both the [C II]/[O I] ratio, and the relatively high [C II]/H{sub 2} ratios observed. The discovery that [C II] emission can be enhanced, in large-scale turbulent regions in collisional environments, has implications for the interpretation of [C II] emission in high-z galaxies.

79 ASTRONOMY AND ASTROPHYSICS↗

A deep search for faint galaxies associated with very low-redshift C iv absorbers. II. Program design, absorption-line measurements, and absorber statistics

To investigate the evolution of metal-enriched gas over recent cosmic epochs as well as to characterize the diffuse, ionized, metal-enriched circumgalactic medium, we have conducted a blind survey for C iv absorption systems in 89 QSO sightlines observed with the Hubble Space Telescope Cosmic Origins Spectrograph. We have identified 42 absorbers at z < 0.16, comprising the largest uniform blind sample size to date in this redshift range. Our measurements indicate an increasing C iv absorber number density per comoving path length (dN/dX= 7.5 ± 1.1) and modestly increasing mass density relative to the critical density of the universe (Ω{sub C iv} = 10.0 ± 1.5 × 10{sup −8}) from z ∼ 1.5 to the present epoch, consistent with predictions from cosmological hydrodynamical simulations. Furthermore, the data support a functional form for the column density distribution function that deviates from a single power law, also consistent with independent theoretical predictions. As the data also probe heavy element ions in addition to C iv at the same redshifts, we identify, measure, and search for correlations between column densities of these species where components appear to be aligned in velocity. Among these ion–ion correlations, we find evidence for tight correlations between C ii and Si ii, C ii and Si iii, and C iv and Si iv, suggesting that these pairs of species arise in similar ionization conditions. However, the evidence for correlations decreases as the difference in ionization potential increases. Finally, when controlling for observational bias, we find only marginal evidence for a correlation (86.8% likelihood) between the Doppler line width b(C iv) and column density N(C iv).

79 ASTRONOMY AND ASTROPHYSICS↗

INTEGRATED RISK ASSESSMENT OF DIGITAL I&C SAFETY SYSTEMS FOR NUCLEAR POWER PLANTS

Upgrading the existing analog instrumentation and control (I&C) systems to state-of-the-art digital I&C (DI&C) systems provides the foremost means to improve performance and reduce costs for existing light-water reactors (LWRs). However, qualification of digital technologies remains a challenge?especially the issue of software common cause failure (CCF), which has been difficult to address. Existing analyses of CCFs in I&C systems mainly focus on hardware failures. With the application and upgrading of new DI&C systems, software CCFs due to design flaws might become a potential threat to plant safety, considering that most redundancy designs use similar digital platforms or software in their operating and application systems. With complex multi-layer redundancy designs to meet the single failure criterion, these I&C safety systems are of particular concern in U.S. Nuclear Regulatory Commission (NRC) licensing procedures. In 2019, the Risk-Informed Systems Analysis (RISA) Pathway of the U.S. Department of Energy?s (DOE?s) Light Water Reactor Sustainability (LWRS) Program initiated a project to develop a risk assessment strategy for delivering a strong technical basis to support effective, licensable, secure DI&C technologies for digital upgrades/designs. An integrated risk assessment for the DI&C (RADIC) process was proposed for this strategy to identify potential key digital-induced failures, implement reliability analyses of related digital safety I&C systems, and evaluate the unanalyzed sequences introduced by these failures (particularly software CCFs) at the plant level. This paper summarizes these RISA efforts in the risk analysis of safety-related DI& systems at Idaho National Laboratory.

22 GENERAL STUDIES OF NUCLEAR REACTORS↗

Maturation of Plastid c -type Cytochromes

Cytochromes c are hemoproteins, with the prosthetic group covalently linked to the apoprotein, which function as electron carriers. A class of cytochromes c is defined by a CXXCH heme-binding motif where the cysteines form thioether bonds with the vinyl groups of heme. Plastids are known to contain up to three cytochromes c . The membrane-bound cytochrome f and soluble cytochrome c 6 operate in photosynthesis while the activity of soluble cytochrome c 6A remains unknown. Conversion of apo- to holocytochrome c occurs in the thylakoid lumen and requires the independent transport of apocytochrome and heme across the thylakoid membrane followed by the stereospecific attachment of ferroheme via thioether linkages. Attachment of heme to apoforms of plastid cytochromes c is dependent upon the products of the CCS (for cytochrome c synthesis) genes, first uncovered via genetic analysis of photosynthetic deficient mutants in the green alga Chlamydomonas reinhardtii . The CCS pathway also occurs in cyanobacteria and several bacteria. CcsA and CCS1, the signature components of the CCS pathway are polytopic membrane proteins proposed to operate in the delivery of heme from the stroma to the lumen, and also in the catalysis of the heme ligation reaction. CCDA, CCS4, and CCS 5 are components of trans-thylakoid pathways that deliver reducing equivalents in order to maintain the heme-binding cysteines in a reduced form prior to thioether bond formation. Lastly, while only four CCS components are needed in bacteria, at least eight components are required for plastid cytochrome c assembly, suggesting the biochemistry of thioether formation is more nuanced in the plastid system.

59 BASIC BIOLOGICAL SCIENCES↗

Biosystems Design to Accelerate C 3 -to-CAM Progression

Global demand for food and bioenergy production has increased rapidly, while the area of arable land has been declining for decades due to damage caused by erosion, pollution, sea level rise, urban development, soil salinization, and water scarcity driven by global climate change. In order to overcome this conflict, there is an urgent need to adapt conventional agriculture to water-limited and hotter conditions with plant crop systems that display higher water-use efficiency (WUE). Crassulacean acid metabolism (CAM) species have substantially higher WUE than species performing C 3 or C 4 photosynthesis. CAM plants are derived from C 3 photosynthesis ancestors. However, it is extremely unlikely that the C 3 or C 4 crop plants would evolve rapidly into CAM photosynthesis without human intervention. Currently, there is growing interest in improving WUE through transferring CAM into C 3 crops. However, engineering a major metabolic plant pathway, like CAM, is challenging and requires a comprehensive deep understanding of the enzymatic reactions and regulatory networks in both C 3 and CAM photosynthesis, as well as overcoming physiometabolic limitations such as diurnal stomatal regulation. Recent advances in CAM evolutionary genomics research, genome editing, and synthetic biology have increased the likelihood of successful acceleration of C 3 -to-CAM progression. Here, we first summarize the systems biology-level understanding of the molecular processes in the CAM pathway. Then, we review the principles of CAM engineering in an evolutionary context. Lastly, we discuss the technical approaches to accelerate the C 3 -to-CAM transition in plants using synthetic biology toolboxes.

59 BASIC BIOLOGICAL SCIENCES↗

C 4 fluxes from the sun as a star and the correlation with magnetic flux

A total of 144 C 4 wavelength 1548 SMM-UVSP spectroheliograms of solar plages were analyzed, some of which are series of exposures of the same region on the same day. Also analyzed were C 4 wavelength 1551 rasters of plages and C 4 1548 rasters of the quiet sun. The sample contains data on 17 different plages, observed on 50 different days. The center-to-limb variations of the active regions show that the optical thickness effects in the C 4 wavelength 1548 line can be neglected in the conversion from intensity to flux density. As expected for the nearly optically thin situation, the C 4 1548 line is twice as bright as the C 4 wavelength 1551 line. The average C 4 wavelength 1548 flux density for a quiet is 2700 erg/cm/s and, with surprisingly little scatter, 18,000 erg/cm/s for plages. The intensity histograms of rasters obtained at disk centers can be separated into characteristic plage and quiet-sun contributions with variable relative filling factors. The disk-averaged flux density in the C 4 doublet and the disk-averaged magnitude of the magnetic flux density are related. The relationship between the C 4 and magnetic flux densities for spatially resolved data is inferred to be almost the same, with only an additional factor of order unity in the constant of proportionality.

Schrijver, C. J.↗

Overview of the Shuttle Imaging Radar (SIR-C)

The Shuttle Imaging Radar-C (SIR-C) experiment will provide increased capability over Seasat and the two previous Shuttle Imaging Radars by acquiring digital images simultaneously at two microwave frequencies (L- and C-band) with multiple signal polarizations (HH, VV, HV, VH). The SIR-C is a dual bandwidth system so that investigators can choose a high or low resolution mode (20 and 10 MHz, respectively). An X-band SAR with VV polarization will be flown with SIR-C, resulting in a three-frequency capability. The SIR-C prototype data will be acquired using an airborne imaging radar to test designs that will be implemented on SIR-C, to develop the overall calibration strategy for SIR-C, and to develop data analysis tools for SIR-C data.

Evans, D.↗

Orion GN and C Model Based Development: Experience and Lessons Learned

The Orion Guidance Navigation and Control (GN&C) team is charged with developing GN&C algorithms for the Exploration Flight Test One (EFT-1) vehicle. The GN&C team is a joint team consisting primarily of Prime Contractor (Lockheed Martin) and NASA personnel and contractors. Early in the GN&C development cycle the team selected MATLAB/Simulink as the tool for developing GN&C algorithms and Mathworks autocode tools as the means for converting GN&C algorithms to flight software (FSW). This paper provides an assessment of the successes and problems encountered by the GN&C team from the perspective of Orion GN&C developers, integrators, FSW engineers and management. The Orion GN&C approach to graphical development, including simulation tools, standards development and autocode approaches are scored for the main activities that the team has completed through the development phases of the program.

Jackson, Mark C.↗

Study of $\mathrm{B}_{c}^{+}$ decays to charmonia and three light hadrons

Using proton-proton collision data, corresponding to an integrated luminosity of 9 fb -1 collected with the LHCb detector, seven decay modes of the $B^+_c$ meson into a $J/ψ$ or $ψ(2S)$ meson and three charged hadrons, kaons or pions, are studied. The decays $B^+_c$ → $(ψ(2S)$ →J/$ψπ^+π^-$)$π^+$, $B^+_c$→$ψ(2S)π^+π^-π^+, B^+_c$→ J/$ψK^+π^-π^+$ and $B^+_c$ → J/$ψK^+K^-K^+$ are observed for the first time, and evidence for the $B^+_c$ →$ψ(2S)K^+K^-π^+$, decay is found, where J/ψ and $(ψ(2S)$ mesons are reconstructed in their dimuon decay modes. The ratios of branching fractions between the different $B^+_c$ decays are reported as well as the fractions of the decays proceeding via intermediate resonances. The results largely support the factorisation approach used for a theoretical description of the studied decays.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Search for the decay $h_c$ → $π^0J/ψ$

A search for the decay $h_c$ → $π^0J/ψ$ is performed using a sample of hc produced in the reaction $e^+e^-$ → $π^+π^-h_c$. The data samples were collected with the BESIII detector at center-of-mass energies between 4.189 and 4.437 GeV, corresponding to a total integrated luminosity of 11 fb -1 . No significant signal is observed. Upper limits on the branching ratio $\mathcal{B}$($h_c$ →$π^oJ/ψ$)/$\mathcal{B}$($h_c$ →$γη_c$ →$γK^+K_-π^o$) and on the branching fraction $\mathcal{B}$($h_c$ →$π^oJ/ψ$) are determined to be 7.5 x 10 -2 and 4.7 x 10 -4 at 90% confidence level, respectively. The latter is derived from the former using the measured branching fraction of the normalization channel. This is the first determination of the upper limit of the decay $h_c$ → $π^0J/ψ$

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

First measurement of Λ c + production down to p T = 0 in p p and p -Pb collisions at s N N = 5.02 TeV

The production of prompt $Λ_{c}^{+}$ baryons has been measured at midrapidity in the transverse momentum interval 0 < p T < 1 GeV/c for the first time, in pp and p–Pb collisions at a center-of-mass energy per nucleon-nucleon collision $\sqrt{s_{NN}}$ = 5.02 TeV . The measurement was performed in the decay channel $Λ_{c}^{+}$ → p$K_{S}^{0}$ by applying new decay reconstruction techniques using a Kalman-Filter vertexing algorithm and adopting a machine-learning approach for the candidate selection. The p T -integrated $Λ_{c}^{+}$ production cross sections in both collision systems were determined and used along with the measured yields in Pb–Pb collisions to compute the p T -integrated nuclear modification factors R pPb and R AA of $Λ_{c}^{+}$ baryons, which are compared to model calculations that consider nuclear modification of the parton distribution functions. The $Λ_{c}^{+}$/D 0 baryon-to-meson yield ratio is reported for pp and p–Pb collisions. Comparisons with models that include modified hadronization processes are presented, and the implications of the results on the understanding of charm hadronization in hadronic collisions are discussed. A significant (3.7σ) modification of the mean transverse momentum of $Λ_{c}^{+}$ baryons is seen in p –Pb collisions with respect to pp collisions, while the p T -integrated $Λ_{c}^{+}$/D 0 yield ratio was found to be consistent between the two collision systems within the uncertainties.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

Helical side chain chemistry of a peptoid‐based SP‐C analogue: Balancing structural rigidity and biomimicry

Abstract Surfactant protein C (SP‐C) is an important constituent of lung surfactant (LS) and, along with SP‐B, is included in exogenous surfactant replacement therapies for treating respiratory distress syndrome (RDS). SP‐C's biophysical activity depends upon the presence of a rigid C‐terminal helix, of which the secondary structure is more crucial to functionality than precise side‐chain chemistry. SP‐C is highly sequence‐conserved, suggesting that the β‐branched, aliphatic side chains of the helix are also important. Nonnatural mimics of SP‐C were created using a poly‐ N ‐substituted glycine, or “peptoid,” backbone. The mimics included varying amounts of α‐chiral, aliphatic side chains and α‐chiral, aromatic side chains in the helical region, imparting either biomimicry or structural rigidity. Biophysical studies confirmed that the peptoids mimicked SP‐C's secondary structure and replicated many of its surface‐active characteristics. Surface activity was optimized by incorporating both structurally rigid and biomimetic side chain chemistries in the helical region indicating that both characteristics are important for activity. By balancing these features in one mimic, a novel analogue was created that emulates SP‐C's in vitro surface activity while overcoming many of the challenges related to natural SP‐C. Peptoid‐based analogues hold great potential for use in a synthetic, biomimetic LS formulation for treating RDS.

Brown, Nathan J.↗

Electronic structure calculation of vanadium-and scandium-based endohedral fullerenes VSc 2 N@C 2 n (2 n = 70, 76, 78, 80)

We present candidate structures for the most stable isomers for the VSc 2 N@C 70 , VSc 2 N@C 76 , VSc 2 N@C 78 , and VSc 2 N@C 80 using a systematic procedure that involves all possible isomers of the host fullerene cages. Subsequently, a detailed investigation of structural and electronic properties of the lowest energy isomers is performed using density functional theory in combination with large polarized Gaussian basis sets. The search correctly identifies the experimentally observed VSc 2 N@C 80 isomer as the most stable structure. The structural analysis shows that onlyVSc 2 N@C 70 has a non-IPR cage among the four endohedral fullerenes. Respectively, VSc 2 N@C 70 and VSc 2 N@C 76 have nearly degenerate spin states with total spin S=0 and S=1. All the lowest energy cages are energetically stable and show significant electron accepting capacity comparable to C 60 .

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Effect of Tempering Temperature on the Microstructure and Properties of Fe-2Cr-Mo-0.12C Pressure Vessel Steel

To obtain the high-temperature strength and toughness of the medium–high-temperature–pressure steel, the microstructure evolution and mechanical properties of Fe-2Cr-Mo-0.12C steel subjected to three different tempering temperatures after being normalized were investigated. The results show that the microstructure of the sample, tempered in the range 675-725 °C for 50 min, did not change dramatically, yet the martensite/austenite constituents decomposed, and the bainite lath merged together and transformed into polygonal ferrite. At the same time, the precipitate size increased with an increase in tempering temperature. With the increase in the tempering temperature from 675 to 725 °C, the impact absorbed energy of the Fe-2Cr-Mo-0.12C steel at −40 °C increased from 257 to 325 J, and the high-temperature yield strength decreased; however, the high-temperature ultimate tensile strength tempered at 700 °C was outstanding (422-571 MPa) at different tested temperatures. The variations of the properties were attributed to the decomposition of M/A constituents and the coarsening of the precipitates. Fe-2Cr-Mo-0.12C steel normalized at 930 °C and tempered at 700 °C was found to have the best combination of ductility and strength.

36 MATERIALS SCIENCE↗

Precipitation Kinetics of M{sub 23}C{sub 6} Carbides in the Super304H Austenitic Heat-Resistant Steel

The precipitation kinetics of M{sub 23}C{sub 6} carbides in Super304H and TP304H steels were investigated using the selective-etching method, SEM backscattered electron images and Image-Pro-Plus 6.0 software. Precipitation–temperature–time (PTT) diagrams of M{sub 23}C{sub 6} carbides in the as-received Super304H (fine grains), coarsened Super304H (coarse grains) and TP304H (coarse grains) steels all show the typical C-shaped character with nose temperature range from 800 to 850 °C. Compared with the TP304H steel, the same trend is found of the PTT curve of M{sub 23}C{sub 6} carbides for both kinds of Super304H steels, but their start lines move to the right and finish lines to the left. The preferential formation of Nb(C,N) phase at grain boundaries in the Super304H steels inhibited the nucleation of M{sub 23}C{sub 6} carbides in the early stage of precipitation, causing the right shift of the start line of PTT curve. The main reason for the left shift of the finish line of the two Super304H steels was the quicker growing and coarsening rate of M{sub 23}C{sub 6} in the later precipitation stage due to their higher C content than in TP304H. For the difference in PPT curves between the two grain sizes of the Super304H steel, the lower diffusion rate of atoms in the coarse-grained Super304H steel may explain its righter finish line than the fine-grained counterpart, while the reason for its lefter start line is due to the higher solute segregation along coarse-grained boundaries.

36 MATERIALS SCIENCE↗

Inversed relationship between CD44 variant and c-Myc due to oxidative stress-induced canonical Wnt activation

Highlights: •CD44 variant8–10 and c-Myc are inversely expressed in gastric cancer cells. •Redox-stress enhances c-Myc expression via canonical Wnt signal. •CD44v, but not CD44 standard, suppresses redox stress-induced Wnt activation. •CD44v expression promotes both transcription and proteasome degradation of c-Myc. •Inversed expression pattern between CD44v and c-Myc is often recognized in vivo. -- Abstract: Cancer stem-like cells express high amount of CD44 variant8-10 which protects cancer cells from redox stress. We have demonstrated by immunohistochemical analysis and Western blotting, and reverse-transcription polymerase chain reaction, that CD44 variant8-10 and c-Myc tend to show the inversed expression manner in gastric cancer cells. That is attributable to the oxidative stress-induced canonical Wnt activation, and furthermore, the up-regulation of the downstream molecules, one of which is oncogenic c-Myc, is not easily to occur in CD44 variant-positive cancer cells. We have also found out that CD44v8-10 expression is associated with the turn-over of the c-Myc with the experiments using gastric cancer cell lines. This cannot be simply explained by the model of oxidative stress-induced Wnt activation. CD44v8-10-positive cancer cells are enriched at the invasive front. Tumor tissue at the invasive area is considered to be composed of heterogeneous cellular population; dormant cancer stem-like cells with CD44v8-10 {sup high}/ Fbw7 {sup high}/ c-Myc {sup low} and proliferative cancer stem-like cells with CD44v8-10 {sup high}/ Fbw7 {sup low}/ c-Myc {sup high}.

60 APPLIED LIFE SCIENCES↗

Regulation of hemeoxygenase-1 gene expression by Nrf2 and c-Jun in tertiary butylhydroquinone-stimulated rat primary astrocytes

Highlights: • tBHQ increased HO-1 mRNA and protein levels in rat primary astrocytes. • tBHQ enhanced HO-1 gene transcription in an ARE-dependent manner. • tBHQ increased the nuclear translocation and DNA binding of Nrf2 and c-Jun to ARE. • Nrf2 and c-Jun are involved in the differential modulation of HO-1 expression. • Nrf2 and c-Jun regulate HO-1 expression via their coordinated interaction. - Abstract: Hemeoxygenase-1 (HO-1) is a phase II antioxidant enzyme that is primarily involved in detoxification and cytoprotection in a variety of tissues. However, the mechanism underlying HO-1 gene expression remains unclear. In the present study, we investigated the regulation of HO-1 expression in primary cultured astrocytes by using the natural antioxidant compound tertiary butylhydroquinone (tBHQ). We found that tBHQ increased HO-1 mRNA and protein levels. Promoter analysis revealed that tBHQ enhanced HO-1 gene transcription in an antioxidant response element (ARE)-dependent manner. In addition, tBHQ increased the nuclear translocation and DNA binding of Nrf2 and c-Jun to ARE. Small interfering RNA (siRNA) experiments demonstrated that Nrf2 and c-Jun are involved in the differential modulation of HO-1 expression. Thus, Nrf2 knockdown reduced the basal level of HO-1 expression but did not affect the fold induction by tBHQ. On the other hand, knockdown of c-Jun diminished tBHQ-mediated induction of HO-1 without affecting basal expression. The data suggest that Nrf2 generally modulates the basal expression of HO-1, while c-Jun mediates HO-1 induction in response to tBHQ. The results of co-immunoprecipitation assays demonstrated a physical interaction between Nrf2 and c-Jun in tBHQ-treated astrocytes. The results suggest that Nrf2 and c-Jun regulate HO-1 expression via their coordinated interaction in tBHQ-treated rat primary astrocytes.

60 APPLIED LIFE SCIENCES↗