Engineering Papers⌕ Search

SEARCH · Engineering Papers

Results for “sampling statistics”

Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

Quote a phrase for an exact phrase match. Source license links do not imply unrestricted reuse.

At least 1,513 records · Page 84
All sourcesNASA NTRSDOE OSTI
DOE OSTI2019

Mediterranean grassland soil C–N compound turnover is dependent on rainfall and depth, and is mediated by genomically divergent microorganisms

Soil microbial activity drives the carbon and nitrogen cycles and is an important determinant of atmospheric trace gas turnover, yet most soils are dominated by microorganisms with unknown metabolic capacities. Even Acidobacteria, among the most abundant bacteria in soil, remain poorly characterized, and functions across groups such as Verrucomicrobia, Gemmatimonadetes, Chloroflexi and Rokubacteria are understudied. Here, we have resolved 60 metagenomic and 20 proteomic data sets from a Mediterranean grassland soil ecosystem and recovered 793 near-complete microbial genomes from 18 phyla, representing around one-third of all microorganisms detected. Importantly, this enabled extensive genomics-based metabolic predictions for these communities. Acidobacteria from multiple previously unstudied classes have genomes that encode large enzyme complements for complex carbohydrate degradation. In contrast, most microorganisms encode carbohydrate esterases that strip readily accessible methyl and acetyl groups from polymers like pectin and xylan, forming methanol and acetate, the availability of which could explain the high prevalence of C 1 metabolism and acetate utilization in genomes. Microorganism abundances among samples collected at three soil depths and under natural and amended rainfall regimes indicate statistically higher associations of inorganic nitrogen metabolism and carbon degradation in deep and shallow soils, respectively. This partitioning decreased in samples under extended spring rainfall, indicating that long-term climate alteration can affect both carbon and nitrogen cycling. As a whole, by leveraging natural and experimental gradients with genome-resolved metabolic profiles, we link microorganisms lacking prior genomic characterization to specific roles in complex carbon, C 1 , nitrate and ammonia transformations, and constrain factors that impact their distributions in soil.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2025

Bonneville Dam Powerhouse 2 Gatewell Improvement Post Construction Evaluation (Final Report)

Modifications to vertical barrier screens (VBS) and the addition of concrete corbels to improve passage conditions for juvenile salmonids in the gatewells of Bonneville Dam’s second powerhouse (B2) were completed prior to the 2024 passage season. To evaluate the effectiveness of those modifications, PNNL carried out a post construction evaluation to contrast fish condition and mortality between two turbine unit operational ranges within the peak efficiency range. A block-treatment study design was implemented in 2024 to contrast descaling and mortality of juvenile salmonids sampled in the juvenile fish facility following exposure to turbine operations (middle versus upper 1% peak efficiency range) during spring and summer passage periods. In spring, 1.96% of juvenile salmonids sampled during mid-1% operations were descaled and 0.46% were mortalities. Of those sampled during upper 1% unit operations in spring, 2.90% were descaled and 0.95% were mortalities. Although these differences appeared to be meaningful, substantial exceedances of the upper 1% limit occurred during two treatment blocks of the spring study period. Fish collected during the upper 1% treatment of these two blocks experienced substantially higher rates of descaling and mortality compared to those collected during mid-1% treatments. Censoring these two upper 1% samples from the spring study period resulted in upper 1% descaling and mortality rates that were statistically similar to those from the mid-1% treatment. During the summer study period, 0.99% of juveniles sampled during mid-1% operations were descaled and 0.33% suffered mortality; these rates were significantly lower than the descaling (2.80%) and mortality (1.73%) rates observed during upper 1% treatments. Comparing the results from the 2024 study to those from the historical (2008–2013) baseline of unmodified units revealed that the descaling and mortality rates observed during upper 1% operations in spring 2024 were near the upper end of the historic range observed for mid-1% operations. Spring 2024 upper 1% descaling and mortality rates were below, or well below the median of historical mid and upper 1% (combined) rates, which suggests that the modifications have had a positive effect. Summer 2024 upper 1% descaling and mortality rates were at or above the top of the range of historical mid 1% and above or well above the median of historical mid and upper 1% (combined) rates. It is important to keep in mind that 2024 is a single year when considering these comparisons. Additional study could help confirm these results or seek a level of operation that achieves the desired outcomes for fish.

13 HYDRO ENERGY↗
DOE OSTI2019

Total Mercury Analysis Comparison: Deployment of Analytical Method for the Savannah River Site Liquid Waste System

A direct mercury analyzer (DMA; EPA 7473) and Cold Vapor Atomic Absorption Spectroscopy (CVAAS; EPA 245.2) have been used to analyze samples high in methylmercury and other forms of mercury with oxidation states of Hg o (elemental), Hg 1+ (mercurous), and/or Hg 2+ (mercuric) to determine analytical data equivalency for total mercury. The DMA instrument has been determined to be the preferred method based on both simulated and radioactive sample testing due to analytical results and ease of use in a radiological hood. SRNL made a number of modifications to the DMA instrument and analysis method to limit the amount of time personnel are required to work in a radiological environment. Equivalency is based on comparative statistical evaluation of the results from: spike solutions/simulants, Tank 50 samples, Mixed Analyte Performance Evaluation Program (MAPEP) samples, and Modular Caustic-Side Solvent Extraction Unit (MCU) solvent samples. SRNL performed a cross-comparison of results using CVAAS, DMA, and Inductively Coupled Plasma Mass Spectrometer (ICP-MS), as well as independent analysis from an offsite laboratory (using cold vapor sample processing with atomic fluorescence detection, EPA 1631). All data were within the combined uncertainty (2σ ± 20%) of the CVAAS and DMA methods

12 MANAGEMENT OF RADIOACTIVE AND NON-RADIOACTIVE W↗
DOE OSTI2013

Monitoring Uranium Transformations Determined by the Evolution of Biogeochemical Processes

Our contribution to the larger project (ANL) was the phylogenetic analysis of evolved communities capable of reducing metals including uranium. We previously reported structural shifts in microbial communities of microcosms constructed with inocula from uranium-contaminated sediment from the Field Research Center (FRC). Incubations were for up to eleven months and samples were taken from both the top and bottom of the sediment of duplicate microcosms incubated at room temperature anaerobically. The biological indices of the microcosm bacterial communities revealed that under strong selective force (e.g., sulfate and uranium) some populations became dominant and the community diversity appeared reduced. With the reduction of U(VI), bacterial community diversity appeared to recovere to its T0 level. Our clone library results revealed that some bacterial populations were persistent in the microcosms during the 11 month incubation period, while others became more abundant or less detectable in response to the prevailing environmental factors. According to the Ribosomal Database Project’s (RDP) Classifier tool, beta-Proteobacteria and Acidobacteria (e.g., Gp8) were highly abundant in the microcosms throughout the incubation period, whereas Desulfovibrio, a known sulfate-reducing Genus within which uranium reducing capabilities also reside, was substantially more abundant at early sampling times when sulfate and uranium were abundant, compared to at the end of the incubation period (11 months). We speculate that the decrease in abundance of Desulfovibrio with time was caused by consumption of sulfate and uranium during early stages of incubation. Interestingly, groups identified by the RDP as unclassified bacteria and unclassified Desulfobacteraceae responded to the selective forces differently. These two groups appeared to be more robust at the end of the incubation period when the strong initial selective force of sulfate and uranium was absent or diminished. The statistical community comparison with UniFrac indicated that early and late stage samples were evolved from the original inoculum. The RDP library comparison tool revealed that bacterial community populations shifted at statistically significant amounts according to time and space. For example, as mentioned above, early stage Desulfovibrio and Desulfobacteraceae abundances were significantly different from those where found at late incubation stage (P=0.01). Similarly, iron-oxidizing bacterium Thiobacillus was significantly more abundant at late sampling times. These results, combined with data from our colleagues were submitted to and accepted for publication in Environmental Science & Technology.

58 GEOSCIENCES↗
NASA NTRS1999

Experiments on Nucleation in Different Flow Regimes

The vast majority of metallic engineering materials are solidified from the liquid phase. Understanding the solidification process is essential to control microstructure, which in turn, determines the properties of materials. The genesis of solidification is nucleation, where the first stable solid forms from the liquid phase. Nucleation kinetics determine the degree of undercooling and phase selection. As such, it is important to understand nucleation phenomena in order to control solidification or glass formation in metals and alloys. Early experiments in nucleation kinetics were accomplished by droplet dispersion methods. Dilatometry was used by Turnbull and others, and more recently differential thermal analysis and differential scanning calorimetry have been used for kinetic studies. These techniques have enjoyed success; however, there are difficulties with these experiments. Since materials are dispersed in a medium, the character of the emulsion/metal interface affects the nucleation behavior. Statistics are derived from the large number of particles observed in a single experiment, but dispersions have a finite size distribution which adds to the uncertainty of the kinetic determinations. Even though temperature can be controlled quite well before the onset of nucleation, the release of the latent heat of fusion during nucleation of particles complicates the assumption of isothermality during these experiments. Containerless processing has enabled another approach to the study of nucleation kinetics. With levitation techniques it is possible to undercool one sample to nucleation repeatedly in a controlled manner, such that the statistics of the nucleation process can be derived from multiple experiments on a single sample. The authors have fully developed the analysis of nucleation experiments on single samples following the suggestions of Skripov. The advantage of these experiments is that the samples are directly observable. The nucleation temperature can be measured by noncontact optical pyrometry, the mass of the sample is known, and post processing analysis can be conducted on the sample. The disadvantages are that temperature measurement must have exceptionally high precision, and it is not possible to isolate specific heterogeneous sites as in droplet dispersions.

Bayuzick, R. J.↗
NASA NTRS1999

Experiments on Nucleation in Different Flow Regimes

The vast majority of metallic engineering materials are solidified from the liquid phase. Understanding the solidification process is essential to control microstructure, which in turn, determines the properties of materials. The genesis of solidification is nucleation, where the first stable solid forms from the liquid phase. Nucleation kinetics determine the degree of undercooling and phase selection. As such, it is important to understand nucleation phenomena in order to control solidification or glass formation in metals and alloys. Early experiments in nucleation kinetics were accomplished by droplet dispersion methods [1-6]. Dilitometry was used by Turnbull and others, and more recently differential thermal analysis and differential scanning calorimetry have been used for kinetic studies. These techniques have enjoyed success; however, there are difficulties with these experiments. Since materials are dispersed in a medium, the character of the emulsion/metal interface affects the nucleation behavior. Statistics are derived from the large number of particles observed in a single experiment, but dispersions have a finite size distribution which adds to the uncertainty of the kinetic determinations. Even though temperature can be controlled quite well before the onset of nucleation, the release of the latent heat of fusion during nucleation of particles complicates the assumption of isothermality during these experiments. Containerless processing has enabled another approach to the study of nucleation kinetics [7]. With levitation techniques it is possible to undercool one sample to nucleation repeatedly in a controlled manner, such that the statistics of the nucleation process can be derived from multiple experiments on a single sample. The authors have fully developed the analysis of nucleation experiments on single samples following the suggestions of Skripov [8]. The advantage of these experiments is that the samples are directly observable. The nucleation temperature can be measured by noncontact optical pyrometry, the mass of the sample is known, and post processing analysis can be conducted on the sample. The disadvantages are that temperature measurement must have exceptionally high precision, and it is not possible to isolate specific heterogeneous sites as in droplet dispersions.

Bayuzick, Robert J.↗
DOE OSTI2025

Joint cosmic density reconstruction from photometric and spectroscopic samples

ABSTRACT We reconstruct the dark matter density field from spatially overlapping spectroscopic and photometric redshift catalogues through a field-level forward modelling approach. Instead of directly inferring the underlying density field, we find the best-fitting initial Gaussian fluctuations that will evolve into the observed cosmic volume. To account for the substantial uncertainty of photometric redshifts we employ a differentiable continuous Poisson process. As an initial test, we construct a mock based on the upcoming Prime Focus Spectrograph combined with photometric sample modelled on the Subaru Hyper Suprime-Cam. Depending on the statistic of interest, we find improvements in cosmic structure classification equivalent to 50–100 per cent more spectroscopic targets by combining relatively sparse spectroscopic with dense photometric samples.

Horowitz, B.↗
DOE OSTI2014

The dark side of galaxy colour: evidence from new SDSS measurements of galaxy clustering and lensing

The age matching model has recently been shown to predict correctly the luminosity L and g-r color of galaxies residing within dark matter halos. The central tenet of the model is intuitive: older halos tend to host galaxies with older stellar populations. In this paper, we demonstrate that age matching also correctly predicts the g-r color trends exhibited in a wide variety of statistics of the galaxy distribution for stellar mass M* threshold samples. In particular, we present new measurements of the galaxy two-point correlation function and the galaxy-galaxy lensing signal as a function of M* and g-r color from the Sloan Digital Sky Survey, and show that age matching exhibits remarkable agreement with these and other statistics of low-redshift galaxies. In so doing, we also demonstrate good agreement between the galaxy-galaxy lensing observed by SDSS and the signal predicted by abundance matching, a new success of this model. We describe how age matching is a specific example of a larger class of Conditional Abundance Matching models (CAM), a theoretical framework we introduce here for the first time. CAM provides a general formalism to study correlations at fixed mass between any galaxy property and any halo property. The striking success of our simple implementation of CAM provides compelling evidence that this technique has the potential to describe the same set of data as alternative models, but with a dramatic reduction in the required number of parameters. CAM achieves this reduction by exploiting the capability of contemporary N-body simulations to determine dark matter halo properties other than mass alone, which distinguishes our model from conventional approaches to the galaxy-halo connection.

79 ASTRONOMY AND ASTROPHYSICS↗
NASA NTRS2004

Evaluation of Rock Powdering Methods to Obtain Fine-grained Samples for CHEMIN, a Combined XRD/XRF Instrument

A miniature XRD/XRF (X-ray diffraction / X-ray fluorescence) instrument, CHEMIN, is currently being developed for definitive mineralogic analysis of soils and rocks on Mars. One of the technical issues that must be addressed to enable remote XRD analysis is how best to obtain a representative sample powder for analysis. For powder XRD analyses, it is beneficial to have a fine-grained sample to reduce preferred orientation effects and to provide a statistically significant number of crystallites to the X-ray beam. Although a two-dimensional detector as used in the CHEMIN instrument will produce good results even with poorly prepared powder, the quality of the data will improve and the time required for data collection will be reduced if the sample is fine-grained and randomly oriented. A variety of methods have been proposed for XRD sample preparation. Chipera et al. presented grain size distributions and XRD results from powders generated with an Ultrasonic/Sonic Driller/Corer (USDC) currently being developed at JPL. The USDC was shown to be an effective instrument for sampling rock to produce powder suitable for XRD. In this paper, we compare powder prepared using the USDC with powder obtained with a miniaturized rock crusher developed at JPL and with powder obtained with a rotary tungsten carbide bit to powders obtained from a laboratory bench-scale Retsch mill (provides benchmark mineralogical data). These comparisons will allow assessment of the suitability of these methods for analysis by an XRD/XRF instrument such as CHEMIN.

Chipera, S. J.↗
DOE OSTI2021

Excess free volume and structural properties of inert gas condensation synthesized nanoparticles based CuZr nanoglasses

Abstract Nanoglass (NG) as a new structure-tunable material has been investigated using both experiments and computational modeling. Experimentally, inert gas condensation (IGC) is commonly employed to prepare metallic glass (MG) nanoparticles that are consolidated using cold compression to generate an NG. In computational modeling, various methods have been used to generate NGs. However, due to the high computational cost involved, heretofore modeling investigations have not followed the experimental synthesis route. In this work, we use molecular dynamics simulations to generate an NG model by consolidating IGC-prepared Cu 64 Zr 36 nanoparticles following a workflow similar to that of experiments. The resulting structure is compared with those of NGs produced following two alternative procedures previously used: direct generation employing Voronoi tessellation and consolidation of spherical nanoparticles carved from an MG sample. We focus on the characterization of the excess free volume and the Voronoi polyhedral statistics in order to identify and quantify contrasting features of the glass-glass interfaces in the three NG samples prepared using distinct methods. Results indicate that glass-glass interfaces in IGC-based NGs are thicker and display higher structural contrast with their parent MG structure. Nanoparticle-based methods display excess free volume exceeding 4%, in agreement with experiments. IGC-prepared nanoparticles, which display Cu segregation to their surfaces, generate the highest glass-glass interface excess free volume levels and the largest relative interface volume with excess free volume higher than 3%. Voronoi polyhedral analysis indicates a sharp drop in the full icosahedral motif fraction in the glass-glass interfaces in nanoparticle-based NG as compared to their parent MG.

36 MATERIALS SCIENCE↗
NASA NTRS1987

Axial ratios and orientations for 100 Galactic globular star clusters

Axial ratios and major-axis orientations determined from image processing of Palomar and SRC Sky Survey material are tabulated for a sample of 100 Galactic globular clusters. From a subsample of 99 clusters, the mean axial ratio is found to be 0.93 + or - 0.01. Given that only 32 percent are flatter than b/a less than 0.9, and 5 percent flatter than 0.8, the clusters are found to be quite spherical. As predicted by King (1961 and 1966), tidal interactions by the Galaxy on the cluster are not the means by which the observed ellipticities are produced. Rather, Galactic absorption effects may have a moderate but not dominant effect on the clusters' observed ellipticities, as suggested by van den Bergh (1984). The alternate mechanisms of cluster rotation or anisotropic internal velocity distributions, or both, are considered to be more likely. The observed distribution of axial ratios is statistically indistinguishable from that of a similar-size sample of rotationally flattened clusters, which have axial-ratio values lying in the range of 0.75 less than b/a less than 0.83, and the major axes of which are oriented randomly in space.

White, Raymond E.↗
DOE OSTI2025

One Galaxy Sample to Rule Them All: Halo Occupation Distribution Modeling of DES Year 3 Source Galaxies

Abstract For the joint analysis of second-order weak-lensing and galaxy clustering statistics, so-called 3 × 2 analyses, the selection and characterization of optimal galaxy samples is a major area of research. One promising choice is to use the same galaxy sample as lenses and sources, which reduces the systematics parameter space that describes the uncertainties related to galaxy samples. Such a “lens-equal-source” analysis significantly improves the self-calibration of photo- z systematics, leading to improved cosmological constraints. With the aim of enabling a lens-equal-source analysis on small scales, we investigate the halo–galaxy connection of DES Year 3 source galaxies. We develop a technique to construct mock source galaxy populations by matching COSMOS/UltraVISTA photometry to U niverse M achine galaxies. These mocks predict a source halo occupation distribution (HOD) that exhibits significant redshift evolution, nontrivial central incompleteness, and galaxy assembly bias. We produce multiple realizations of mock source galaxies drawn from the U niverse M achine posterior, with added uncertainties in the measured Dark Energy Survey photometry and galaxy shapes. We fit a modified HOD formalism to these realizations to produce priors on the galaxy–halo connection for cosmological analyses. We additionally train an emulator that predicts this HOD to ∼2% accuracy from redshift z = 0.1−1.3 that models the dependence of this HOD on (1) observational uncertainties in galaxy size and photometry and (2) uncertainties in the U niverse M achine predictions.

Salcedo, Andrés N. (ORCID:000000031420527X)↗
DOE OSTI2014

Dusty disks around central stars of planetary nebulae

Only a few percent of cool, old white dwarfs (WDs) have infrared excesses interpreted as originating in small hot disks due to the infall and destruction of single asteroids that come within the star's Roche limit. Infrared excesses at 24 μm were also found to derive from the immediate vicinity of younger, hot WDs, most of which are still central stars of planetary nebulae (CSPNe). The incidence of CSPNe with this excess is 18%. The Helix CSPN, with a 24 μm excess, has been suggested to have a disk formed from collisions of Kuiper belt-like objects (KBOs). In this paper, we have analyzed an additional sample of CSPNe to look for similar infrared excesses. These CSPNe are all members of the PG 1159 class and were chosen because their immediate progenitors are known to often have dusty environments consistent with large dusty disks. We find that, overall, PG 1159 stars do not present such disks more often than other CSPNe, although the statistics (five objects) are poor. We then consider the entire sample of CSPNe with infrared excesses and compare it to the infrared properties of old WDs, as well as cooler post-asymptotic giant branch (AGB) stars. We conclude with the suggestion that the infrared properties of CSPNe more plausibly derive from AGB-formed disks rather than disks formed via the collision of KBOs, although the latter scenario cannot be ruled out. Finally, there seems to be an association between CSPNe with a 24 μm excess and confirmed or possible binarity of the central star.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2018

New compositional data on ancient mortars and plasters from Pompeii (Campania – Southern Italy): Archaeometric results and considerations about their time evolution

Highlights: • Mortar samples from Pompeii, with different constructive functions, were studied. • Characterization of the materials can be used for preparing compatible mortars. • Analogies and differences were highlighted to identify the constructive phases. • Preliminary statistic models were proposed to discriminate materials and constructive phases. Twenty-six samples of mortar used for various construction applications (joint mortars, floor mortars, filling mortars and plasters) were collected from different areas of the archaeological site of Pompeii (Campania - Sothern Italy). The mortar samples belong to various historical periods covering approximately 2000 years, from the 2nd century BC to the post excavation period (18–19th century). The samples were characterized employing Optical Microscopy (OM), X-ray Powder Diffraction (XRPD), X-ray Fluorescence (XRF), Electron Probe Micro Analysis (EPMA) and Raman Spectroscopy. Moreover, image analysis was carried out using JMicroVision software in order to determine the percentages of binder, macropores and aggregate, in terms of crushed ceramic fragments (cocciopesto), rock fragments and monocrystals. The application of these techniques allowed obtaining a complete chemical and minero-petrographic characterization of the samples, which may prove useful for preparing compatible repair mortars for future restoration works. The archaeometric study provided new data on the production technology of the mortars and the analogies and differences observed among the samples, enabled us to distinguish different constructive phases, thus confirming or rebutting the archaeological hypothesis on the dating of some samples. By combining compositional variables through the discriminant analysis, it was also possible to analyse the time evolution of the materials and to construct preliminary multivariate statistical models, helpful to identify the various typologies of mortars used in the different historical periods.

36 MATERIALS SCIENCE↗
NASA NTRS2018

Combined Error and Uncertainty Estimates for CFD Problems

Given input sources of uncertainty, non-intrusive uncertainty propagation methods quantify the uncertainty in output quantities of interest (QoI) by performing a nite number of CFD (Computational Fluid Dynamics) instance realizations needed in the calculation of output statistics. It is well known that this introduces multiple sources of error. CFD codes often utilize finite-dimensional approximation (grids, basis functions, etc.) thus incurring CFD numerical errors often approximately reinterpreted as a statistical bias. Uncertainty propagation methods calculate uncertainty statistics for output quantities of interest using a numerical method (e.g. deterministic quadrature, sampling, etc.) thus incurring UQ (Uncertainty Quantification) numerical errors. Importance of quantifying these errors in large scale scientific computing: How accurate is an output statistic?; How should additional computational resources be invested to further reduce the error in a statistic?

Posteriori↗
DOE OSTI2021

Core-collapse contamination in photometric samples of Type Ia Supernovae

This is an exciting time for cosmology with type Ia supernovae (SNe Ia). The recentlyconcluded Dark Energy Survey SN programme (DES-SN) has obtained the largest anddeepest high-redshift cosmological SN Ia sample, and the Vera Rubin Observatory isexpected to observe at least one order of magnitude more SNe Ia in the next decade.In both these experiments, only a limited fraction (.10 per cent) of the SNe can bespectroscopically classified. This leaves us with large ‘photometric’ SN samples, withthe potential for significant contamination by core-collapse SNe that may bias SN Iacosmological measurements. This thesis demonstrates how this contamination can bemodelled and accounted for in current and future cosmological analyses.First, I present state-of-the-art simulations of the SN universe. These are designedto accurately model the population of SNe Ia, peculiar SNe Ia and core-collapse SNe, aswell as their host galaxies. To improve the diversity and quality of the simulated corecollapseSNe, I build a new library of core-collapse SN templates using spectroscopicand photometric (optical and near-ultraviolet) data of 67 core-collapse SNe from theliterature. I account for our incomplete knowledge of core-collapse SN properties bygenerating a set of SN simulations (rather than a single one), each exploring differentmodelling choices and template libraries. I then characterise selection effects in theDES-SN survey and incorporate them in the simulations, thus obtaining a series ofDES-like simulated SN samples that can be compared to the observed DES-SN data.The agreement between the simulations and data is excellent across many observed SNproperties, including Hubble residuals. These simulations are the first to reproduce theobserved photometric SN and host galaxy properties in high-redshift surveys with no fine-tuning of the input parameters.I use my simulation framework to train and test the performance of SuperNNova,a photometric SN classifier based on recurrent neural networks. I explore differenttraining and validation strategies and show that, across all the DES-SN simulationstested, SuperNNova reduces core-collapse SN contamination to 0.8–3.5 per cent. Ithen show that biases due to contamination on the equation-of-state of dark energy,w, are < 0:008 when using our reference SuperNNova model. This compares to anexpected statistical uncertainty on w from the DES-SN sample of 0:039, thus showing that contamination is not a limiting systematic for the cosmological analysis of theDES-SN sample.The results presented in this thesis are the foundation of the DES SN Ia cosmologicalanalysis; they also provide important implications for the future of SN cosmology,as they demonstrate that contamination is not expected to significantly degrade thecosmological figure of merit of the Rubin SN Ia analysis.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2015

Serum Proteome Profiles in Stricturing Crohn’s Disease: A pilot study.

Background: Crohn’s disease (CD) is a form of inflammatory bowel disease (IBD) with different described behaviors, including stricture. At present, there are no laboratory studies that can differentiate stricturing CD from other phenotypes of IBD. We performed a pilot study to examine differences in the proteome among patients with stricturing Crohn’s disease, non-stricturing Crohn’s disease, and ulcerative colitis (UC). Methods: Serum samples were selected from the Ocean State Crohn’s and Colitis Area Registry (OSCCAR), an established cohort of patients with IBD. Crohn’s disease patients with surgically-resected stricture were matched with similar patients with Crohn’s disease without known stricture, and with UC. Serum samples from each patient were digested and analyzed using liquid chromatography-mass spectrometry to characterize the proteome. Statistical analyses were performed to identify peptides and proteins that can differentiate CD with stricture. Results: Samples from 9 patients in each group (27 total patients) were analyzed. Baseline demographic characteristics were similar among the three groups. We quantified 7668 peptides and 897 proteins for analysis. ROC analysis identified a subset of peptides with an area under the curve greater than 0.9, indicating greater separation potential. Partial least squares discriminant analysis was able to distinguish among the three groups with up to 70% accuracy by peptides, and up to 80% accuracy by proteins. We identified the significantly different proteins and peptides, and determined their function based on previously published literature. Conclusions: The serum of patients with stricturing CD, non-stricturing CD, and UC are distinguishable via proteomic analysis. Some of the proteins that differentiate the stricturing phenotype have been implicated in complement activation, fibrinolytic pathways, and lymphocyte adhesion.

Environmental Molecular Sciences Laboratory↗