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NASA NTRS2001

Spectral Dimensionality and Scale of Urban Radiance

Characterization of urban radiance and reflectance is important for understanding the effects of solar energy flux on the urban environment as well as for satellite mapping of urban settlement patterns. Spectral mixture analyses of Landsat and Ikonos imagery suggest that the urban radiance field can very often be described with combinations of three or four spectral endmembers. Dimensionality estimates of Airborne Visible/Infrared Imaging Spectrometer (AVIRIS) radiance measurements of urban areas reveal the existence of 30 to 60 spectral dimensions. The extent to which broadband imagery collected by operational satellites can represent the higher dimensional mixing space is a function of both the spatial and spectral resolution of the sensor. AVIRIS imagery offers the spatial and spectral resolution necessary to investigate the scale dependence of the spectral dimensionality. Dimensionality estimates derived from Minimum Noise Fraction (MNF) eigenvalue distributions show a distinct scale dependence for AVIRIS radiance measurements of Milpitas, California. Apparent dimensionality diminishes from almost 40 to less than 10 spectral dimensions between scales of 8000 m and 300 m. The 10 to 30 m scale of most features in urban mosaics results in substantial spectral mixing at the 20 m scale of high altitude AVIRIS pixels. Much of the variance at pixel scales is therefore likely to result from actual differences in surface reflectance at pixel scales. Spatial smoothing and spectral subsampling of AVIRIS spectra both result in substantial loss of information and reduction of apparent dimensionality, but the primary spectral endmembers in all cases are analogous to those found in global analyses of Landsat and Ikonos imagery of other urban areas.

Small, Christopher↗

DOE OSTI2024

Approximation of ice phenology of Maine lakes using Aqua MODIS surface temperature data

Studies of lake ice phenology have historically relied on limited in situ data. Relatively few observations exist for ice out and fewer still for ice in, both of which are necessary to determine the temporal extent of ice cover. Satellite data provide an opportunity to better document patterns of ice phenology across landscapes and relate them to the climatological drivers behind changing ice phenology. We developed a model, the Cumulative Sum Method (CSM), that uses daytime and nighttime surface temperature observations from the Moderate Resolution Imaging Spectroradiometer (MODIS) sensor on board the Earth-observing Aqua satellite to approximate ice in (the onset of ice cover) and ice out from training datasets of 13 and 58 Maine lakes, respectively, during the 2002/2003 through 2017/2018 ice seasons. Ice in was signaled by reaching a threshold of cumulative negative degrees following the first day of the season below 0°C. Ice out was signaled by reaching a threshold of cumulative positive degrees following the first day of the year above 0°C. The comparison of observed and remotely sensed ice-in dates showed relative agreement with a correlation coefficient of 0.71 and a mean absolute error (MAE) of 9.8 days. Ice-out approximations had a correlation coefficient of 0.67 and an MAE of 8.8 days. Lakes smaller in surface area and nearer the Atlantic coast had the greatest error in approximation. Application of the CSM to 20 additional lakes in Maine produced a comparable ice-out MAE of 8.9 days. Ice-out model performance was weaker for the warmest years; there was a larger MAE of 12.0 days when the model was applied to the years 2019–2023 for the original 58 lakes. The development of this model, which utilizes daily satellite data, demonstrates the promise of remote sensing for quantifying ice phenology over short, temporal scales, and wider geographic regions than can be observed in situ, and allows exploration of the influence of surface temperature patterns on the process and timing of ice in and ice out.

54 ENVIRONMENTAL SCIENCES↗

NASA NTRSDate not supplied

Scaling Laws of Ejecta Streaks in Lunar Landings

From the crewed Apollo missions of the 1960s to the recent Chang’e uncrewed lunar missions, the interaction between the supersonic exhaust and the lunar surface generates a striking ray system of ejecta particles that travel radially outward at high speeds. While this intriguing pattern has been observed in experiments and simulations, the underlying mechanism remains unclear. These radial ejecta streaks were also observed during an experimental campaign using a Mach 5.3 jet impinging on a granular bed within a large-scale vacuum chamber. Our findings reveal that the radial ejecta streaks are caused by the Gortler instability, which, due to the curvature of the extremely underexpanded jet, induces counter-rotating streamwise vortices within the jet shear layer. These vortices impact the ground and entrain particles in their upwash regions. Experimental measurements from both ground tests and the literature show that the number of streaks strongly depends on the jet diameter at impact and the shear layer thickness, further revealing a power-law scaling with the jet pressure ratio. These insights highlight the pivotal role of fluid dynamics in extraterrestrial landings and provide a foundation for mitigating risks in future planetary missions.

Lunar Landing↗

NASA NTRS1988

The gasdynamics of compact relativistic jets

The gasdynamics of compact relativistic jets is explored by analyzing a specific idealized flow problem using the method of characteristics. The basic flow pattern of the gas and pressure waves within a jet experiencing a drop in external pressure is calculated, with analytic expressions given for many of the important parameters. Scaling laws which relate the intrinsic properties of the jet to the pressure of the surrounding medium are obtained and discussed. The physical properties of the jet depend critically on the value and abruptness of the decrease in external pressure, as well as on the initial Lorentz factor of the flow. A variety of the flow patterns can result, including jets of oscillating cross section, jets with standing shocks, and broad, nearly hollow beams which can break up into multiple jets. These results are discussed in relation to the observed characteristics of superluminal radio sources in general and the superluminal quasar 4C 39.25 in particular.

Daly, Ruth A.↗

NASA NTRS1993

Stationary eddies in the Mars general circulation as simulated by the NASA-Ames GCM

Quasistationary eddies are prominent in a large set of simulations of the Mars general circulation performed with the NASA-Ames GCM. Various spacecraft observations have at least hinted at the existence of such eddies in the Mars atmosphere. The GCM stationary eddies appear to be forced primarily by the large Mars topography, and (to a much lesser degree) by spatial variations in the surface albedo and thermal inertia. The stationary eddy circulations exhibit largest amplitudes at high altitudes (above 30-40 km) in the winter extratropical regions. In these regions they are of planetary scale, characterized largely by zonal wavenumbers 1 and 2. Southern Hemisphere winter appears to be dominated by a very strong wave 1 pattern, with both waves 1 and 2 being prominent in the Northern Hemisphere winter regime. This difference seems to be basically understandable in terms of differences in the topography in the two hemispheres. The stationary eddies in the northern winter extratropics are found to increase in amplitude with dust loading. This behavior appears to be at least partly associated with changes in the structure of the zonal-mean flow that favor a greater response to wave 1 topographic forcing. There are also strong stationary eddy circulations in the tropics and in the summer hemisphere. The eddies in the summer subtropics and extratropics arc substantially stronger in southern summer than in northern summer. The summer hemisphere stationary circulations are relatively shallow and are characterized by smaller zonal scales than those in the winter extratropics.

Barnes, J. R.↗

DOE OSTI2024

Construction of Reconfigurable and Polymorphic DNA Origami Assemblies with Coiled‐Coil Patches and Patterns

Abstract DNA origami nanodevices achieve programmable structure and tunable mechanical and dynamic properties by leveraging the sequence‐specific interactions of nucleic acids. Previous advances have also established DNA origami as a useful building block to make well‐defined micron‐scale structures through hierarchical self‐assembly, but these efforts have largely leveraged the structural features of DNA origami. The tunable dynamic and mechanical properties also provide an opportunity to make assemblies with adaptive structures and properties. Here the integration of DNA origami hinge nanodevices and coiled‐coil peptides are reported into hybrid reconfigurable assemblies. With the same dynamic device and peptide interaction, it is made multiple higher‐order assemblies (i.e., polymorphic assembly) by organizing clusters of peptides into patches or arranging single peptides into patterns on the surfaces of DNA origami to control the relative orientation of devices. The coiled‐coil interactions are used to construct circular and linear assemblies whose structure and mechanical properties can be modulated with DNA‐based reconfiguration. Reconfiguration of linear assemblies leads to micron scale motions and ≈2.5‐10‐fold increase in bending stiffness. The results provide a foundation for stimulus‐responsive hybrid assemblies that can adapt their structure and properties in response to nucleic acid, peptide, protein, or other triggers.

59 BASIC BIOLOGICAL SCIENCES↗

NASA NTRS2000

Southern Alaska as an Example of the Long-Term Consequences of Mountain Building Under the Influence of Glaciers

Southern Alaska is a continent-scale region of ongoing crustal deformation within the Pacific-North American plate boundary zone. Glaciers and glacial erosion have dictated patterns of denudation in the orogen over the last approx. 5 My. The orogen comprises three discrete topographic domains from south to north, respectively: (1) the Chugach/St. Elias Range; (2) the Wrangell Mountains; and (3) the eastern Alaska Range. Although present deformation is distributed across the orogen, much of the shortening and uplift are concentrated in the Chugach/St. Elias Range. A systematic increase in topographic wavelength of the range from east to west reflects east-to-west increases in the width of a shallowly-dipping segment of the plate interface, separation of major upper plate structures, and a decrease in the obliquity of plate motion relative to the plate boundary. Mean elevation decays exponentially from approx. 2500 m to approx. 1100 m from east to west, respectively. Topographic control on the present and past distribution of glaciers is indicated by close correspondence along the range between mean elevation and the modern equilibrium line altitude of glaciers (ELA) and differences in the modern ELA, mean annual precipitation and temperature across the range between the windward, southern and leeward, northern flanks. Net, range- scale erosion is the sum of: (1) primary bedrock erosion by glaciers and (2) erosion in areas of the landscape that are ice-marginal and are deglaciated at glacial minima. Oscillations between glacial and interglacial climates controls ice height and distribution, which, in turn, modulates the locus and mode of erosion in the landscape. Mean topography and the mean position of the ELA are coupled because of the competition between rock uplift, which tends to raise the ELA, and enhanced orographic precipitation accompanying mountain building, which tends to lower the ELA. Mean topography is controlled both by the 60 deg latitude and maritime setting of active deformation and by the feedback between shortening and uplift, glacial erosion, and orographic effects on climate accompanying mountain building.

Meigs, Andrew↗

NASA NTRS2012

Macro Scale Independently Homogenized Subcells for Modeling Braided Composites

An analytical method has been developed to analyze the impact response of triaxially braided carbon fiber composites, including the penetration velocity and impact damage patterns. In the analytical model, the triaxial braid architecture is simulated by using four parallel shell elements, each of which is modeled as a laminated composite. Currently, each shell element is considered to be a smeared homogeneous material. The commercial transient dynamic finite element code LS-DYNA is used to conduct the simulations, and a continuum damage mechanics model internal to LS-DYNA is used as the material constitutive model. To determine the stiffness and strength properties required for the constitutive model, a top-down approach for determining the strength properties is merged with a bottom-up approach for determining the stiffness properties. The top-down portion uses global strengths obtained from macro-scale coupon level testing to characterize the material strengths for each subcell. The bottom-up portion uses micro-scale fiber and matrix stiffness properties to characterize the material stiffness for each subcell. Simulations of quasi-static coupon level tests for several representative composites are conducted along with impact simulations.

Blinzler, Brina J.↗

DOE OSTI2025

Effect of pattern transfer process on roughness of block copolymer patterns from directed self-assembly

Block copolymer-directed self-assembly (DSA) remains promising for improving pattern quality and reducing the stochastic variations that challenge high numerical aperture extreme ultraviolet lithography. Equally critical is refining pattern transfer methods for accurately transferring the rectified DSA features to the underlying substrate. We compare two atomic layer deposition (ALD)-based techniques: sequential infiltration synthesis (SIS) and dry liftoff, applied to polystyrene-block-poly(methyl methacrylate) (PS-b-PMMA) DSA patterns. Both methods utilize aluminum oxide hard masks, with one synthesized through infiltration into the PMMA domains and the other through conformal ALD coating. High-resolution scanning electron micrographs were analyzed to measure line edge, width, and placement roughness for both the line (PMMA) and space (PS) features. Although both methods yielded similar overall 3σ rms roughness, they differed significantly in the frequency-dependent power spectral density (PSD) profiles. SIS reduced line placement roughness at length scales associated with the polymer pitch, but increased space width roughness at low frequencies, whereas dry liftoff mimicked the frequency content of the original guiding pattern. This study underscores the importance of PSD evaluation in selecting optimal pattern transfer strategies for specific applications.

Block copolymers↗

NASA NTRS2017

On the Relationship Between Sub-Daily Instantaneous and Daily Total Gross Primary Production: Implications for Interpreting Satellite-Based SIF Retrievals

Spatially and temporally continuous estimation of plant photosynthetic carbon fixation (or gross primary production, GPP) is crucial to our understanding of the global carbon cycle and the impact of climate change. Besides spatial, seasonal and interannual variations, GPP also exhibits strong diurnal variations. Satellite retrieved solar-induced chlorophyll fluorescence (SIF) provides a spatially continuous, but temporally discrete measurement of plant photosynthesis, and has the potential to be used to estimate GPP at global scale. However, it remains unclear whether the seasonal time series of SIF snapshots taken at a fixed time of the day can be used to infer daily total GPP variation at spatial and seasonal scales. In this study, we first used GPP estimates from 135 eddy covariance flux sites, covering a wide range of geographic locations and biome types, to investigate the relationship between the instantaneous GPP (GPP(sub inst)) and daily GPP (GPP(sub daily)) on the seasonal course for different times of the day. Latitudinal and diurnal patterns were found to correspond to variations in photosynthetically active radiation (PAR) and light use efficiency (LUE), respectively. We then used the Soil-Canopy Observation Photosynthesis and Energy Balance (SCOPE) model and the FluxCom GPP product to investigate the instantaneous and daily SIF-GPP relationships at five flux tower sites along a latitudinal gradient and at a global scale for different biome types. The results showed that daily SIF had a stronger linear correlation with daily GPP than instantaneous SIF at the seasonal scale, with an instantaneous to daily SIF conversion factor following the latitudinal and seasonal pattern driven by PAR. Our study highlights the necessity to take the latitudinal and diurnal factors into consideration for SIF-GPP relationship analyses or for physiological phenology analyses based on SIF.

photosynthesis model↗

DOE OSTI2023

Multiscale simulations reveal TDP-43 molecular-level interactions driving condensation

The RNA-binding protein TDP-43 is associated with mRNA processing and transport from the nucleus to the cytoplasm. TDP-43 localizes in the nucleus as well as accumulating in cytoplasmic condensates such as stress granules. Aggregation and formation of amyloid-like fibrils of cytoplasmic TDP-43 are hallmarks of numerous neurodegenerative diseases, most strikingly present in >90% of amyotrophic lateral sclerosis (ALS) patients. If excessive accumulation of cytoplasmic TDP-43 causes, or is caused by, neurodegeneration is presently not known. In this work, we use molecular dynamics simulations at multiple resolutions to explore TDP-43 self- and cross-interaction dynamics. A full-length molecular model of TDP-43, all 414 amino acids, was constructed from select structures of the protein functional domains (N-terminal domain, and two RNA recognition motifs, RRM1 and RRM2) and modeling of disordered connecting loops and the low complexity glycine-rich C-terminus domain. All-atom CHARMM36m simulations of single TDP-43 proteins served as guides to construct a coarse-grained Martini 3 model of TDP-43. The Martini model and a coarser implicit solvent Cα model, optimized for disordered proteins, were subsequently used to probe TDP-43 interactions; self-interactions from single-chain full-length TDP-43 simulations, cross-interactions from simulations with two proteins and simulations with assemblies of dozens to hundreds of proteins. Our findings illustrate the utility of different modeling scales for accessing TDP-43 molecular-level interactions and suggest that TDP-43 has numerous interaction preferences or patterns, exhibiting an overall strong, but dynamic, association and driving the formation of biomolecular condensates.

59 BASIC BIOLOGICAL SCIENCES↗

DOE OSTI2021

PS3: The Pheno-Synthesis software suite for integration and analysis of multi-scale, multi-platform phenological data

Phenology is the study of recurring plant and animal life-cycle stages which can be observed across spatial and temporal scales that span orders of magnitude (e.g., organisms to landscapes). The variety of scales at which phenological processes operate is reflected in the range of methods for collecting phenologically relevant data, and the programs focused on these collections. Consideration of the scale at which phenological observations are made, and the platform used for observation, is critical for the interpretation of phenological data and the application of these data to both research questions and land management objectives. However, there is currently little capacity to facilitate access, integration and analysis of cross-scale, multi-platform phenological data. This paper reports on a new suite of software and analysis tools – the “Pheno-Synthesis Software Suite,” or PS3 – to facilitate integration and analysis of phenological and ancillary data, enabling investigation and interpretation of phenological processes at scales ranging from organisms to landscapes and from days to decades. We use PS3 to investigate phenological processes in a semi-aride, mixed shrub-grass ecosystem, and find that the apparent importance of seasonal precipitation to vegetation activity (i.e., “greenness”) is affected by the scale and platform of observation. We end by describing potential applications of PS3 to phenological modeling and forecasting, understanding patterns and drivers of phenological activity in real-world ecosystems, and supporting agricultural and natural resource management and decision-making.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2022

Two-Dimensional Mechanics of Atomically Thin Solids on Water

Movement of a three-dimensional solid at an air–water interface is strongly influenced by the extrinsic interactions between the solid and the water. The finite thickness and volume of a moving solid causes capillary interactions and water-induced drag. In this Letter, we report the fabrication and dynamical imaging of freely floating MoS 2 solids on water, which minimizes such extrinsic effects. For this, we delaminate a synthesized wafer-scale monolayer MoS 2 onto a water surface, which shows negligible height difference across water and MoS 2 . Subsequently patterning by a laser generates arbitrarily shaped MoS 2 with negligible in-plane strain. We introduce photoswitchable surfactants to exert a lateral force to floating MoS 2 with a spatiotemporal control. Using this platform, we demonstrate a variety of two-dimensional mechanical systems that show reversible shape changes. Our experiment provides a versatile approach for designing and controlling a large array of atomically thin solids on water for intrinsically two-dimensional dynamics and mechanics.

2D materials↗

DOE OSTI2024

Machine Learning Classification Strategy to Improve Streamflow Estimates in Diverse River Basins in the Colorado River Basin

Streamflow in the Colorado River Basin (CRB) is significantly altered by human activities including land use/cover alterations, reservoir operation, irrigation, and water exports. Climate is also highly varied across the CRB which contains snowpack-dominated watersheds and arid, precipitation-dominated basins. Recently, machine learning methods have improved the generalizability and accuracy of streamflow models. Previous successes with LSTM modeling have primarily focused on unimpacted basins, and few studies have included human impacted systems in either regional or single-basin modeling. We demonstrate that the diverse hydrological behavior of river basins in the CRB are too difficult to model with a single, regional model. We propose a method to delineate catchments into categories based on the level of predictability, hydrological characteristics, and the level of human influence. Lastly, we model streamflow in each category with climate and anthropogenic proxy data sets and use feature importance methods to assess whether model performance improves with additional relevant data. Overall, land use cover data at a low temporal resolution was not sufficient to capture the irregular patterns of reservoir releases, demonstrating the importance of having high-resolution reservoir release data sets at a global scale. On the other hand, the classification approach reduced the complexity of the data and has the potential to improve streamflow forecasts in human-altered regions.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2022

Understanding the Impact of Data Staging for Coupled Scientific Workflows

We report the rate of data generated by cutting-edge experimental science facilities and large-scale simulations enabled by current high-performance computing (HPC) systems has continued to grow at a far greater pace than the development of the network and storage capabilities on which these systems rely. To cope with this challenge, scientist are moving toward the creation of autonomous experiments and HPC simulations using machine learning. However, efficiently moving, storing, and processing large amounts of data away from the point of origin presents an incredible challenge. In-memory computing, in situ analysis, data staging, and data streaming are recognized viable alternatives to traditional file-based methods for transferring data between coupled workflows. However, the performance trade-offs and limitations for these methods are not fully understood when used in HPC applications. This article presents a comprehensive performance assessment of the current solutions for data staging when applied to applications that are not necessary I/O intensive which makes them not ideal candidates for these methods. Our study is based on experiments running at scale on Oak Ridge National Laboratory's Summit supercomputer using applications and simulations that cover typical computational motifs and patterns. We investigated the usability and cost/benefit trade-offs of staging algorithms for HPC applications under different scenarios and highlight opportunities for optimizing the dataflow between coupled simulation workflows.

97 MATHEMATICS AND COMPUTING↗

DOE OSTI2023

Coordination and divergence in community assembly processes across co-occurring microbial groups separated by cell size

Setting the pace of life and constraining the role of members in food webs, body size can affect the structure and dynamics of communities across multiple scales of biological organization (e.g., from the individual to the ecosystem). However, its effects on shaping microbial communities, as well as underlying assembly processes, remain poorly known. Here, we analyzed microbial diversity in the largest urban lake in China and disentangled the ecological processes governing microbial eukaryotes and prokaryotes using 16S and 18S amplicon sequencing. We found that pico/nano-eukaryotes (0.22–20 μm) and micro-eukaryotes (20–200 μm) showed significant differences in terms of both community composition and assembly processes even though they were characterized by similar phylotype diversity. We also found scale dependencies whereby micro-eukaryotes were strongly governed by environmental selection at the local scale and dispersal limitation at the regional scale. Interestingly, it was the micro-eukaryotes, rather than the pico/nano-eukaryotes, that shared similar distribution and community assembly patterns with the prokaryotes. This indicated that assembly processes of eukaryotes may be coupled or decoupled from prokaryotes’ assembly processes based on eukaryote cell size. While the results support the important influence of cell size, there may be other factors leading to different levels of assembly process coupling across size classes. Additional studies are needed to quantitatively parse the influence of cell size versus other factors as drivers of coordinated and divergent community assembly processes across microbial groups. Regardless of the governing mechanisms, our results show that there are clear patterns in how assembly processes are coupled across sub-communities defined by cell size. These size-structured patterns could be used to help predict shifts in microbial food webs in response to future disturbance.

59 BASIC BIOLOGICAL SCIENCES↗

DOE OSTI2023

Applying the core-satellite species concept: Characteristics of rare and common riverine dissolved organic matter

Introduction: Dissolved organic matter (DOM) composition varies over space and time, with a multitude of factors driving the presence or absence of each compound found in the complex DOM mixture. Compounds ubiquitously present across a wide range of river systems (hereafter termed core compounds) may differ in chemical composition and reactivity from compounds present in only a few settings (hereafter termed satellite compounds). Here, we investigated the spatial patterns in DOM molecular formulae presence (occupancy) in surface water and sediments across 97 river corridors at a continental scale using the “Worldwide Hydrobiogeochemical Observation Network for Dynamic River Systems—WHONDRS” research consortium. Methods: We used a novel data-driven approach to identify core and satellite compounds and compared their molecular properties identified with Fourier-transform ion cyclotron resonance mass spectrometry (FT-ICR MS). Results: In this work, we found that core compounds clustered around intermediate hydrogen/carbon and oxygen/carbon ratios across both sediment and surface water samples, whereas the satellite compounds varied widely in their elemental composition. Within surface water samples, core compounds were dominated by lignin-like formulae, whereas protein-like formulae dominated the core pool in sediment samples. In contrast, satellite molecular formulae were more evenly distributed between compound classes in both sediment and water molecules. Core compounds found in both sediment and water exhibited lower molecular mass, lower oxidation state, and a higher degree of aromaticity, and were inferred to be more persistent than global satellite compounds. Higher putative biochemical transformations were found in core than satellite compounds, suggesting that the core pool was more processed. Discussion: The observed differences in chemical properties of core and satellite compounds point to potential differences in their sources and contribution to DOM processing in river corridors. Overall, our work points to the potential of data-driven approaches separating rare and common compounds to reduce some of the complexity inherent in studying riverine DOM.

54 ENVIRONMENTAL SCIENCES↗

NASA NTRS1974

An investigation of wave-particle interactions and particle dynamics using electron beams injected from sounding rockets

Electrons with energy up to 40 kV have been injected into semi-trapped orbits from sounding rockets at Wallops Island, Virginia, and at Fort Churchill, Manitoba, Canada. By directing the rocket trajectory to have a horizontal component which in direction and speed matched the bounce displacement of the injected electrons, it was possible to detect conjugate echoes at Wallops and possibly at Churchill, and to study the distribution of the echoes in space, time and energy. By combining observations of many echoes, a composite picture can be obtained of the beam patterns. Atmospheric scattering at the conjugate point of Wallops Island has been extensively studied, and the process produces a scale width of 5-10 m, but with an echo intensity which is only 10% of theoretical estimates.

Winckler, J. R.↗