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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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All sourcesNASA NTRSDOE OSTI
NASA NTRSDate not supplied

Batch Effect Correction Methods for NASA GeneLab Transcriptomic Datasets

RNA sequencing (RNA-seq) data from space biology experiments promise to yield invaluable insights into the effects of spaceflight on terrestrial biology. However, sample numbers from each study are low due to limited crew availability, hardware, and space. To increase statistical power, spaceflight RNA-seq datasets from different missions are often aggregated together. However, this can introduce technical variation or "batch effects", often due to differences in sample handling, sample processing, and sequencing platforms. Several computational methods have been developed to correct for technical batch effects, thereby reducing their impact on true biological signals. In this study, we combined 7 mouse liver RNA-seq datasets from NASA GeneLab (part of the NASA Open Science Data Repository) to evaluate several common batch effect correction methods (ComBat and ComBat-seq from the sva R package, and Median Polish, Empirical Bayes, and ANOVA from the MBatch R package). We quantitatively evaluated the ability of these methods to correct for technical batch variables in space biology RNA-seq data using the following criteria: BatchQC, principal component analysis, dispersion separability criterion, log fold change correlation, and differential gene expression analysis. Each batch variable / correction method combination was then assessed using a custom scoring approach to identify the optimal correction method for the combined dataset, by geometrically probing the space of all allowable scoring functions to yield an aggregate volume-based scoring measure. Finally, we describe the way in which the GeneLab multi-study analysis and visualization portal will allow users to examine the presence or absence of batch effects using multiple metrics. If the user chooses to perform batch effect correction, the scoring approach described here can be implemented to identify the optimal correction method to use for their specific combined dataset prior to analysis.

Lauren M. Sanders↗
DOE OSTI2014

Metabolic Network Discovery by Top-Down and Bottom-Up Approaches and Paths for Reconciliation

The primary focus in the network-centric analysis of cellular metabolism by systems biology approaches is to identify the active metabolic network for the condition of interest. Two major approaches are available for the discovery of the condition-specific metabolic networks. One approach starts from genome-scale metabolic networks, which cover all possible reactions known to occur in the related organism in a condition-independent manner, and applies methods such as the optimization-based Flux-Balance Analysis to elucidate the active network. The other approach starts from the condition-specific metabolome data, and processes the data with statistical or optimization-based methods to extract information content of the data such that the active network is inferred. These approaches, termed bottom-up and top-down, respectively, are currently employed independently. However, considering that both approaches have the same goal, they can both benefit from each other paving the way for the novel integrative analysis methods of metabolome data- and flux-analysis approaches in the post-genomic era. This study reviews the strengths of constraint-based analysis and network inference methods reported in the metabolic systems biology field; then elaborates on the potential paths to reconcile the two approaches to shed better light on how the metabolism functions.

60 APPLIED LIFE SCIENCES↗
NASA NTRS1994

Airfoil optimization by the one-shot method

An efficient numerical approach for the design of optimal aerodynamic shapes is presented in this paper. The objective of any optimization problem is to find the optimum of a cost function subject to a certain state equation (Governing equation of the flow field) and certain side constraints. As in classical optimal control methods, the present approach introduces a costate variable (Language multiplier) to evaluate the gradient of the cost function. High efficiency in reaching the optimum solution is achieved by using a multigrid technique and updating the shape in a hierarchical manner such that smooth (low-frequency) changes are done separately from high-frequency changes. Thus, the design variables are changed on a grid where their changes produce nonsmooth (high-frequency) perturbations that can be damped efficiently by the multigrid. The cost of solving the optimization problem is approximately two to three times the cost of the equivalent analysis problem.

Kuruvila, G.↗
NASA NTRS1995

Airfoil Design and Optimization by the One-Shot Method

An efficient numerical approach for the design of optimal aerodynamic shapes is presented in this paper. The objective of any optimization problem is to find the optimum of a cost function subject to a certain state equation (governing equation of the flow field) and certain side constraints. As in classical optimal control methods, the present approach introduces a costate variable (Lagrange multiplier) to evaluate the gradient of the cost function. High efficiency in reaching the optimum solution is achieved by using a multigrid technique and updating the shape in a hierarchical manner such that smooth (low-frequency) changes are done separately from high-frequency changes. Thus, the design variables are changed on a grid where their changes produce nonsmooth (high-frequency) perturbations that can be damped efficiently by the multigrid. The cost of solving the optimization problem is approximately two to three times the cost of the equivalent analysis problem.

Kuruvila, G.↗
DOE OSTI2022

Effectively using multifidelity optimization for wind turbine design

Abstract. Wind turbines are complex multidisciplinary systems that are challenging to design because of the tightly coupled interactions between different subsystems. Computational modeling attempts to resolve these couplings so we can efficiently explore new wind turbine systems early in the design process. Low-fidelity models are computationally efficient but make assumptions and simplifications that limit the accuracy of design studies, whereas high-fidelity models capture more of the actual physics but with increased computational cost. This paper details the use of multifidelity methods for optimizing wind turbine designs by using information from both low- and high-fidelity models to find an optimal solution at reduced cost. Specifically, a trust-region approach is used with a novel corrective function built from a nonlinear surrogate model. We find that for a diverse set of design problems – with examples given in rotor blade geometry design, wind turbine controller design, and wind power plant layout optimization – the multifidelity method finds the optimal design using 38 %–58 % of the computational cost of the high-fidelity-only optimization. The success of the multifidelity method in disparate applications suggests that it could be more broadly applied to other wind energy or otherwise generic applications.

17 WIND ENERGY↗
DOE OSTI2015

A frozen Gaussian approximation-based multi-level particle swarm optimization for seismic inversion

In this paper, we propose a frozen Gaussian approximation (FGA)-based multi-level particle swarm optimization (MLPSO) method for seismic inversion of high-frequency wave data. The method addresses two challenges in it: First, the optimization problem is highly non-convex, which makes hard for gradient-based methods to reach global minima. This is tackled by MLPSO which can escape from undesired local minima. Second, the character of high-frequency of seismic waves requires a large number of grid points in direct computational methods, and thus renders an extremely high computational demand on the simulation of each sample in MLPSO. We overcome this difficulty by three steps: First, we use FGA to compute high-frequency wave propagation based on asymptotic analysis on phase plane; Then we design a constrained full waveform inversion problem to prevent the optimization search getting into regions of velocity where FGA is not accurate; Last, we solve the constrained optimization problem by MLPSO that employs FGA solvers with different fidelity. The performance of the proposed method is demonstrated by a two-dimensional full-waveform inversion example of the smoothed Marmousi model.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗
DOE OSTI2022

Optimal operation and sizing of pumped thermal energy storage for net benefits maximization

Abstract Current trends in the modern grid are leading to the development and deployment of energy storage to help integrate increasing variable renewable energy sources into the grid. This paper studies a pumped thermal energy storage (PTES) system for multiple grid services including energy arbitrage, frequency regulation, spinning and non‐spinning reserve, and resource adequacy. Optimal dispatch methods are proposed for individual services as well as value stacking from multiple services to maximize the economic benefits. Assessment results demonstrate the superiority of value stacking. Specifically, the study shows the maximum revenue from an individual grid service with a 30‐MWh PTES system was $522,520, while the value stacking could increase the benefits to $678,477. In addition, sensitivity analyses were conducted to explore the cost‐effectiveness of a PTES system with different combinations of power transfer limits and energy capacity. It was found that the power transfer limit had a greater impact than the energy capacity on the benefits. The proposed method could help determine the optimal duration of a future PTES system.

25 ENERGY STORAGE↗
DOE OSTI2014

A multicriteria framework with voxel-dependent parameters for radiotherapy treatment plan optimization

Purpose: To establish a new mathematical framework for radiotherapy treatment optimization with voxel-dependent optimization parameters. Methods: In the treatment plan optimization problem for radiotherapy, a clinically acceptable plan is usually generated by an optimization process with weighting factors or reference doses adjusted for a set of the objective functions associated to the organs. Recent discoveries indicate that adjusting parameters associated with each voxel may lead to better plan quality. However, it is still unclear regarding the mathematical reasons behind it. Furthermore, questions about the objective function selection and parameter adjustment to assure Pareto optimality as well as the relationship between the optimal solutions obtained from the organ-based and voxel-based models remain unanswered. To answer these questions, the authors establish in this work a new mathematical framework equipped with two theorems. Results: The new framework clarifies the different consequences of adjusting organ-dependent and voxel-dependent parameters for the treatment plan optimization of radiation therapy, as well as the impact of using different objective functions on plan qualities and Pareto surfaces. The main discoveries are threefold: (1) While in the organ-based model the selection of the objective function has an impact on the quality of the optimized plans, this is no longer an issue for the voxel-based model since the Pareto surface is independent of the objective function selection and the entire Pareto surface could be generated as long as the objective function satisfies certain mathematical conditions; (2) All Pareto solutions generated by the organ-based model with different objective functions are parts of a unique Pareto surface generated by the voxel-based model with any appropriate objective function; (3) A much larger Pareto surface is explored by adjusting voxel-dependent parameters than by adjusting organ-dependent parameters, possibly allowing for the generation of plans with better trade-offs among different clinical objectives. Conclusions: The authors have developed a mathematical framework for radiotherapy treatment optimization using voxel-based parameters. The authors can improve the plan quality by adjusting voxel-based weighting factors and exploring the unique and large Pareto surface which include all the Pareto surfaces that can be generated by organ-based model using different objective functions.

62 RADIOLOGY AND NUCLEAR MEDICINE↗
NASA NTRS1987

Robust eigenstructure assignment by a projection method: Application using multiple optimization criteria

New ideas which lead to feedback control laws for large flexible structures which are insensitive to model uncertainty are presented. A pole placement method is presented which leads to near-unitary closed loop eigenvectors, and a new method is introduced to design the control while simultaneously considering three competing measures of optimality. Robustness versus Integral algorithms are applicable to at least moderately high-dimensioned systems. In the present discussion, controls for two coupled flexible bodies are considered. A 6x24 gain matrix is designed to control a 12 modes system using 6 actuators. Researchers also developed control laws for the R2P2 simulator at Martin Marietta; in this case 3 actuators are used to control a 12th order system. Simulation studies indicate that researchers indeed achieved robust designs without significant difficulties associated with spillover into the uncontrolled modes. Here, several key ideas and numerical results are given. In the references, details of the formulation, discussions of salient features, and connection to the availiable literature are given.

Junkins, J. L.↗
NASA NTRS1995

Viscous aerodynamic design using the adjoint variable approach

The use of classical optimal control methods, in particular variational methods, to solve the airfoil optimization problem, by deriving a set of adjoint (costate) equations and boundary conditions has already been done for inviscid (potential and Euler flows) and two dimensional, steady state, incompressible flow governed by the Navier-Stokes equations. The interior and boundary terms of the volume integral have been derived (in this work) for the steady Navier-Stokes equations in three dimensions for a viscous, compressible heat conducting fluid. This can be used to derive the adjoint equations and numerical boundary conditions for general classes of problems and hence paves the way for a solution to the aerodynamic optimization problem for compressible viscous flows. The next steps to the realization of that goal are projected as below. The usual square integral pressure functional as an objective function is being replaced by a more realistic drag functional subject to a lift constraint. The feasibility of attempting the more difficult time dependent problem is being investigated. It remains to get the full system of adjoint equations and boundary conditions with the new functional. The state and adjoint equations must be discretized and coded. An appropriate optimization program must be used (steepest descents seems inadequate) and various known airfoil shapes should be recovered in test cases of the computer program.

DeRise, George↗
DOE OSTI2017

Coordinated distribution network control of tap changer transformers, capacitors and PV inverters

A power distribution system operates most efficiently with voltage deviations along a feeder kept to a minimum and must ensure all voltages remain within specified limits. Recently with the increased integration of photovoltaics, the variable power output has led to increased voltage fluctuations and violation of operating limits. This study proposes an optimization model based on a recently developed heuristic search method, grey wolf optimization, to coordinate the various distribution controllers. Several different case studies on IEEE 33 and 69 bus test systems modified by including tap changing transformers, capacitors and photovoltaic solar panels are performed. Simulation results are compared to two other heuristic-based optimization methods: harmony search and differential evolution. Finally, the simulation results show the effectiveness of the method and indicate the usage of reactive power outputs of PVs facilitates better voltage magnitude profile.

24 POWER TRANSMISSION AND DISTRIBUTION↗
DOE OSTI2022

Optimized x-ray emission from 10 ns long germanium x-ray sources at the National Ignition Facility

This study investigates methods to optimize quasi-monochromatic, ~10 ns long x-ray sources (XRS) for time-resolved x-ray diffraction measurements of phase transitions during dynamic laser compression measurements at the National Ignition Facility (NIF). To support this, we produce continuous and pulsed XRS by irradiating a Ge foil with NIF lasers to achieve an intensity of 2 × 10 15 W/cm 2 , optimizing the laser-to-x-ray conversion efficiency. Our x-ray source is dominated by Ge He-α line emission. Here, we discuss methods to optimize the source to maintain a uniform XRS for ~10 ns, mitigating cold plasma and higher energy x-ray emission lines.

47 OTHER INSTRUMENTATION↗
NASA NTRS1973

Detection of fatigue cracks by nondestructive testing methods

The effectiveness was assessed of various NDT methods to detect small tight cracks by randomly introducing fatigue cracks into aluminum sheets. The study included optimizing NDT methods calibrating NDT equipment with fatigue cracked standards, and evaluating a number of cracked specimens by the optimized NDT methods. The evaluations were conducted by highly trained personnel, provided with detailed procedures, in order to minimize the effects of human variability. These personnel performed the NDT on the test specimens without knowledge of the flaw locations and reported on the flaws detected. The performance of these tests was measured by comparing the flaws detected against the flaws present. The principal NDT methods utilized were radiographic, ultrasonic, penetrant, and eddy current. Holographic interferometry, acoustic emission monitoring, and replication methods were also applied on a reduced number of specimens. Generally, the best performance was shown by eddy current, ultrasonic, penetrant and holographic tests. Etching provided no measurable improvement, while proof loading improved flaw detectability. Data are shown that quantify the performances of the NDT methods applied.

Anderson, R. T.↗
NASA NTRSDate not supplied

GASP Advancements With Symbolic Computations, Optimization, and Decoupled Numerical Methods

NASA is exploring advancements in hybrid-electric propulsion concepts for aircraft design. A new analysis capability has been deployed at NASA’s Ames Research Center using a new mathematical modeling framework in Python that leverages symbolic representation of mathematical expressions, optimization-based problem formulations, and standalone numerical methods. This capability, called Gascon, has been verified against NASA’s General Aviation Synthesis Program (GASP) results for several vehicles that exercise the analysis capability for a variety of aircraft classes and engine models, including both turbofans and turboprops. We believe this capability will set the stage for more rapid development of novel aircraft models with more flexible design assessments using optimization, and more traceable analysis for reproducibility. Additionally, a novel Pareto optimization-based design space exploration that shows the trade between range flown and fuel burn by manipulating the thrust split during cruise for a true parallel hybrid aircraft was developed by leveraging the unique features of Gascon.

aircraft design↗
DOE OSTI2023

A novel method for co-optimizing battery sizing and charging strategy of battery electric bus fleets: An application to the city of Paris

Battery-electric buses (BEBs) are a promising technology for replacing diesel buses and reducing their environmental burden. However, their charging process can take several hours, depending on the charging technique and strategy, making them susceptible to schedule disruptions. Furthermore, the selection of the charging strategy and battery size can increase the total capital investment and operational expenses of a BEB fleet, which is a major obstacle to its adoption. Therefore, to minimize the total cost of ownership (TCO) and prevent schedule disruptions, it is essential to establish a well-defined approach to determine an appropriate battery size and charging strategy for BEB fleets. This paper presents a method for reducing the TCO of BEB by determining the optimal battery size and charging strategy for each bus while satisfying operating constraints. The method involves a two-step optimization algorithm that uses Dynamic Programming and Genetic Algorithm. Further, the study applies this approach to the bus fleet serving line 21 in Paris and generates the optimal battery sizing, charging strategy, and required charging infrastructure. The results indicate that 100 kWh batteries offer the best trade-off between capital and operational expenditure for the fleet deployment if used with 65–85 kW chargers at bus terminals.

33 ADVANCED PROPULSION SYSTEMS↗
DOE OSTI2022

Serial-Refine Method for Fast Wake-Steering Yaw Optimization

In this paper we present the Serial-Refine method for quickly finding the optimal yaw angles in wake steering. The method optimizes turbine angles serially from upstream to downstream using a small number of candidate angles. The presented results show that Serial-Refine finds solutions that are at least as good as former conventional optimization approaches but that require much less computation time.

17 WIND ENERGY↗