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At least 1,513 records · Page 84

Embedded Error Bayesian Calibration of Thermal Decomposition of Organic Materials

Organic materials are an attractive choice for structural components due to their light weight and versatility. However, because they decompose at low temperatures relative to tradiational materials they pose a safety risk due to fire and loss of structural integrity. To quantify this risk, analysts use chemical kinetics models to describe the material pyrolysis and oxidation using thermogravimetric analysis. This process requires the calibration of many model parameters to closely match experimental data. Previous efforts in this field have largely been limited to finding a single best-fit set of parameters even though the experimental data may be very noisy. Furthermore the chemical kinetics models are often simplified representations of the true de- composition process. The simplification induces model-form errors that the fitting process cannot capture. In this work we propose a methodology for calibrating decomposition models to thermogravimetric analysis data that accounts for uncertainty in the model-form and experimental data simultaneously. The methodology is applied to the decomposition of a carbon fiber epoxy composite with a three-stage reaction network and Arrhenius kinetics. The results show a good overlap between the model predictions and thermogravimetric analysis data. Uncertainty bounds capture devia- tions of the model from the data. The calibrated parameter distributions are also presented. In conclusion, the distributions may be used in forward propagation of uncertainty in models that leverage this material.

36 MATERIALS SCIENCE↗

Building a Real-Time Predictive Flood Model for Improving Early Warning Systems in Ellicott City, Maryland

As flood events in the United States grow in frequency and intensity, the use of applied remote sensing analyses is increasingly necessary for effective flood monitoring and warning systems. The NASA DEVELOP National Program partnered with the Howard County government in Maryland to investigate the use of machine learning for advanced flood risk detection, and to test the feasibility of integrating this approach into the county’s flood early warning system. To strengthen the efforts of the Howard County Office of Emergency Management (OEM), the project developed a prediction model capable of hindcasting the two severe flash flood events that devastated Ellicott City, and transitioned to an Long Short-Term Memory (LSTM) based sequence-to-sequence deep learning model with 8-hour forecast capability. The team combined data inputs from public sources including river and precipitation gauges, NASA and NOAA Earth observations, and numerical weather model products using scripts written in the Google Colaboratory Python scripting environment. In addition to designing the deep learning architecture, the team trained and tested the model, and evaluated its performance using the Nash-Sutcliffe Efficiency (NSE). The final product, called the Sequentially Trained Real-time EstimAted Model (STREAM), predicts stage height for the Hudson Branch gauge in Ellicott City using data products available in near real-time, including the High-Resolution Rapid Refresh (HRRR) model’s accumulated precipitation forecasts supplemented by stream gauge data from the OEM and the U.S. Geological Survey. STREAM was incorporated into an online dashboard in a user-friendly interface capable of triggering the alarms that initiate the OEM’s emergency response protocols up to 8 hours in advance of a predicted severe flood event. The project demonstrated the potential for the integration of open data and Earth observations into a flood risk forecasting tool capable of informing near real-time decision making.

Ryan Hammock↗

Time-resolved Proteome Profiling of Normal Lung Development

The biochemical networks mediating normal lung development remain unclear with important implications for ameliorating morbidity and mortality in premature infants. Here we perform integrative proteomics and metabolomics analyses of murine lungs from embryonic to early adult ages to characterize the molecular networks mediating normal lung development. Multi-omics analysis identified 8,932 proteins and 158 polar metabolites providing a deep and comprehensive view of the lung proteome and metabolome during normal development. Analysis of the proteomics data revealed ten discrete expression modules driving lung development and the underlying regulatory and signaling network modulating these expression modules. Of interest our data suggest the action of protein ubiquitination in regulating lung development extends beyond the pseudoglandular stage previously described. Combined analysis of the proteomics and metabolomics supported the notion of increased cell proliferation earlier in lung development. Additionally, comparison of the proteomics data with a recent transcriptome analysis revealed biological processes under post-transcriptional control during lung development. Our study provides a unique resource for understanding normal lung development, and potentially avenues for developing strategies to address disrupted development.

computational network analysis, lung development, ↗

Application of a Two-dimensional Unsteady Viscous Analysis Code to a Supersonic Throughflow Fan Stage

The Rai ROTOR1 code for two-dimensional, unsteady viscous flow analysis was applied to a supersonic throughflow fan stage design. The axial Mach number for this fan design increases from 2.0 at the inlet to 2.9 at the outlet. The Rai code uses overlapped O- and H-grids that are appropriately packed. The Rai code was run on a Cray XMP computer; then data postprocessing and graphics were performed to obtain detailed insight into the stage flow. The large rotor wakes uniformly traversed the rotor-stator interface and dispersed as they passed through the stator passage. Only weak blade shock losses were computerd, which supports the design goals. High viscous effects caused large blade wakes and a low fan efficiency. Rai code flow predictions were essentially steady for the rotor, and they compared well with Chima rotor viscous code predictions based on a C-grid of similar density.

Steinke, Ronald J.↗

The Impact of Extent and Location of Mediastinal Lymph Node Involvement on Survival in Stage III Non-Small Cell Lung Cancer Patients Treated With Definitive Radiotherapy

Purpose: Several surgical series have identified subcarinal, contralateral, and multilevel nodal involvement as predictors of poor overall survival in patients with Stage III non-small-cell lung cancer (NSCLC) treated with definitive resection. This retrospective study evaluates the impact of extent and location of mediastinal lymph node (LN) involvement on survival in patients with Stage III NSCLC treated with definitive radiotherapy. Methods and Materials: We analyzed 106 consecutive patients with T1-4 N2-3 Stage III NSCLC treated with definitive radiotherapy at University of Pennsylvania between January 2003 and February 2009. For this analysis, mediastinal LN stations were divided into four mutually exclusive groups: supraclavicular, ipsilateral mediastinum, contralateral mediastinum, and subcarinal. Patients' conditions were then analyzed according to the extent of involvement and location of mediastinal LN stations. Results: The majority (88%) of patients received sequential or concurrent chemotherapy. The median follow-up time for survivors was 32.6 months. By multivariable Cox modeling, chemotherapy use (hazard ratio [HR]: 0.21 [95% confidence interval (CI): 0.07-0.63]) was associated with improved overall survival. Increasing primary tumor [18F]-fluoro-2-deoxy-glucose avidity (HR: 1.11 [CI: 1.06-1.19]), and subcarinal involvement (HR: 2.29 [CI: 1.11-4.73]) were significant negative predictors of overall survival. On univariate analysis, contralateral nodal involvement (HR: 0.70 [CI: 0.33-1.47]), supraclavicular nodal involvement (HR: 0.78 [CI: 0.38-1.67]), multilevel nodal involvement (HR: 0.97 [CI: 0.58-1.61]), and tumor size (HR: 1.04 [CI: 0.94-1.14]) did not predict for overall survival. Patients with subcarinal involvement also had lower rates of 2-year nodal control (51.2% vs. 74.9%, p = 0.047) and 2-year distant control (28.4% vs. 61.2%, p = 0.043). Conclusions: These data suggest that the factors that determine oncologic outcome in Stage III NSCLC patients treated with definitive radiotherapy are distinct from those observed in patients who undergo surgical resection. The ultimate efficacy of radiation in locally advanced NSCLC is dependent on the intrinsic biology of the tumor.

62 RADIOLOGY AND NUCLEAR MEDICINE↗

Recursive Partitioning Analysis for New Classification of Patients With Esophageal Cancer Treated by Chemoradiotherapy

Background: The 7th edition of the American Joint Committee on Cancer staging system does not include lymph node size in the guidelines for staging patients with esophageal cancer. The objectives of this study were to determine the prognostic impact of the maximum metastatic lymph node diameter (ND) on survival and to develop and validate a new staging system for patients with esophageal squamous cell cancer who were treated with definitive chemoradiotherapy (CRT). Methods: Information on 402 patients with esophageal cancer undergoing CRT at two institutions was reviewed. Univariate and multivariate analyses of data from one institution were used to assess the impact of clinical factors on survival, and recursive partitioning analysis was performed to develop the new staging classification. To assess its clinical utility, the new classification was validated using data from the second institution. Results: By multivariate analysis, gender, T, N, and ND stages were independently and significantly associated with survival (p < 0.05). The resulting new staging classification was based on the T and ND. The four new stages led to good separation of survival curves in both the developmental and validation datasets (p < 0.05). Conclusions: Our results showed that lymph node size is a strong independent prognostic factor and that the new staging system, which incorporated lymph node size, provided good prognostic power, and discriminated effectively for patients with esophageal cancer undergoing CRT.

62 RADIOLOGY AND NUCLEAR MEDICINE↗

Methamidophos alters sperm function and DNA at different stages of spermatogenesis in mice

Methamidophos (MET) is a highly toxic organophosphate (OP) pesticide that is widely used in developing countries. MET has male reproductive effects, including decreased fertility. We evaluated MET effects on sperm quality, fertilization and DNA integrity, exploring the sensitivity of different stages of spermatogenesis. Adult male mice received MET (3.75 or 5 mg/kg-bw/ip/day/4 days) and were euthanized 1, 28 or 45 days post-treatment (dpt) to evaluate MET's effects on epididymal maturation, meiosis or mitosis, respectively. Spermatozoa were obtained from the cauda epididymis–vas deferens and were evaluated for sperm quality, acrosome reaction (AR; Coomassie staining), mitochondrial membrane potential (by JC-1), DNA damage (comet assay), oxidative damage (malondialdehyde (MDA) production), in vitro fertilization and protein phosphorylation (immunodetection), and erythrocyte acetylcholinesterase (AChE) activity. At 1-dpt, MET inhibited AChE (43–57%) and increased abnormal cells (6%). While at 28- and 45-dpt, sperm motility and viability were significantly reduced with an increasing MET dose, and abnormal morphology increased at 5 mg/kg/day/4 days. MDA and mitochondrial activity were not affected at any dose or time. DNA damage (OTM and %DNA) was observed at 5 mg/kg/day/4 days in a time-dependent manner, whereas both parameters were altered in cells from mice exposed to 3.75 mg/kg/day/4 days only at 28-dpt. Depending on the time of collection, initial-, spontaneous- and induced-AR were altered at 5 mg/kg/day/4 days, and the fertilization capacity also decreased. Sperm phosphorylation (at serine and tyrosine residues) was observed at all time points. Data suggest that meiosis and mitosis are the more sensitive stages of spermatogenesis for MET reproductive toxicity compared to epididymal maturation. - Highlights: • Methamidophos alters sperm cell function at different stages of spermatogenesis. • Testicular stages of spermatogenesis are more sensitive to methamidophos toxicity. • Methamidophos causes sperm DNA damage at mitosis, meiosis and epididymal maturation. • Sperm cell damage by methamidophos exposure may be related to protein phosphorylation.

60 APPLIED LIFE SCIENCES↗

Scalable, In-situ Data Clustering Data Analysis for Extreme Scale Scientific Computing (Final Report)

The objective of this project is to address challenges in the design and development of scalable in-situ data clustering and analytics algorithms and software. Our goal is to develop parallel software consisting of a set of spatio-temporal data clustering and anomaly detection functions, both of which are very important for large-scale analysis and have wide applicability for in-situ runs as well as post-processing analysis. Our design principles for in-situ analysis consider the following: (1) identify parts of the computation can be done close to the data within the nodes, while it is still in memory; (2) extract analysis components can (and should) be performed in remote staging and analysis nodes; (3) develop error-bound approximation methods for applications tolerable for small errors; (4) identify the type of derived distributions and statistics, for spatio-temporal data, that can be kept locally in order to both accelerate computations and meet energy constraints in subsequent iterations and phases; (5) use a self-describing data format so that data can be consistent and understood among local storage (memory and SSDs) and at staging and analysis nodes, thereby providing portability and flexibility; (6) develop service-oriented functions that can schedule in-situ and post-hoc analysis tasks based on the dynamic requirements of applications. Our development focus is to produce the parallel data analysis software/library that will be scalable, reusable, extensible, and generic for applications in different disciplines. The software will be able to run in-situ with the simulations as well as post-hoc analysis. This approach will satisfy many synergistic requirements for data intensive applications executed on data coming from instruments and experiments. In particular, the proposed multilevel approach is directly applicable to perform design tradeoffs for running part of the algorithms near the instruments and the rest on remote (analysis) systems.

97 MATHEMATICS AND COMPUTING↗

Effect of shear strength on Hugoniot-compression curve and the equation of state of tungsten (W)

The Hugoniot data for highly dense polycrystalline tungsten were obtained for pressures above 200 GPa, and the equation of state (EOS) was determined taking into account shear strength effects. For this study, we have made some improvements in measurement system and analyses of the shock wave data. Symmetric-impact Hugoniot measurements were performed using the high-time resolution streak camera system equipped on a one-stage powder gun and two-stage light gas gun, where the effects of tilting and bowing of flyer plate on the Hugoniot data were carefully considered. The shock velocity–particle velocity (U{sub S}–U{sub P}) Hugoniot relation in the plastic regime was determined to be U{sub S} = 4.137 + 1.242U{sub P} km/s (U{sub P} < 2 km/s). Ultrasonic and Velocity Interferometer System for Any Reflector measurements were also performed in this study. The zero-intercept value of the U{sub S}–U{sub P} Hugoniot relation was found to be slightly larger than the ultrasonic bulk sound velocity (4.023 km/s). The hypothetical hydrostatic isothermal U{sub s}–U{sub p} Hugoniot curve, which corresponds to the hydrostatic isothermal compression curve derived from the Hugoniot data using the strength data, converged to the bulk sound velocity, clearly showing shear strength dependence in the Hugoniot data. The EOS for tungsten is derived from the hydrostatic isothermal compression curve using the strength data.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Preliminary data processing system for telemetry data from Interkosmos-8 type satellites

The preliminary data processing system (PDPS), a set of algorithms, programs, equipment, data storage and memory devices, and all devices controlling the processing, is described using the Intercosmos-8 satellite as an example. Each stage of the system is considered along with its content and sequence. The essential elements of the data processing structure are described and the concepts underlying the selection of these elements are discussed.

Vilchinskaya, A. S.↗

Towards A Flexible Data Fusion Tool Incorporating Model, Satellite, Regulatory Monitor and Low-Cost Sensor Data for Air Quality Estimation and Forecasting

Air quality managers, researchers, and concerned community scientists around the world have a variety of sources for air quality information, ranging from traditional regulatory monitoring networks and atmospheric chemistry models to remote sensing data products and low-cost sensor networks. However, the ability to incorporate data from these disparate sources and synthesize a comprehensive overview of the local air quality situation remains a considerable barrier for many end-users. This presentation will outline a tool, currently in development, which will address this need using a flexible data fusion approach. The tool will make use of air quality forecast model outputs (primarily from the NASA GEOS-CF composition forecast modeling system), satellite remote sensing data (from instruments including MODIS, VIIRS, TROPOMI, plus TEMPO for the US when available), and in-situ data from official regulatory and/or low-cost networks where these are available. The ability to incorporate data from low-cost sensor networks will be a key feature of the tool; it will make use of other available data sources to calibrate the low-cost sensor data on a regional scale, then use these calibrated low-cost sensor data for localized updating to resolve finer-scale air quality patterns. Development of this tool is taking place with the help of national and international partners and end-user groups, coordinated through the US EPA and the United Nations Environment Programme (UNEP). The tool is being developed on the Google Earth Engine cloud computing platform to facilitate integration of diverse data sources and free access by a broad community of end-users. Stewardship of the tool will be passed to US EPA and UNEP to support future activities with end-users in the US and around the world, and the tool itself will remain freely accessible. We hope that this tool will lower the barrier to entry for various user groups worldwide, including community scientists, who struggle to integrate disparate data sources to gain insight into their local air quality situations. This presentation will cover the early stages of the development of the tool, including the underlying methods and some pilot case studies in integrating low-cost sensor data.

global models↗

Lessons Learned from Ares I Upper Stage Structures and Thermal Design

The Ares 1 Upper Stage was part of the vehicle intended to succeed the Space Shuttle as the United States manned spaceflight vehicle. Although the Upper Stage project was cancelled, there were many lessons learned that are applicable to future vehicle design. Lessons learned that are briefly detailed in this Technical Memorandum are for specific technical areas such as tank design, common bulkhead design, thrust oscillation, control of flight and slosh loads, purge and hazardous gas system. In addition, lessons learned from a systems engineering and vehicle integration perspective are also included, such as computer aided design and engineering, scheduling, and data management. The need for detailed systems engineering in the early stages of a project is emphasized throughout this report. The intent is that future projects will be able to apply these lessons learned to keep costs down, schedules brief, and deliver products that perform to the expectations of their customers.

Ahmed, Rafiq↗

Reliability Lessons Learned From GPU Experience With The Titan Supercomputer at Oak Ridge Leadership Computing Facility

The high computational capability of graphics processing units (GPUs) is enabling and driving the scientific discovery process at large-scale. The world’s second fastest supercomputer for open science, Titan, has more than 18,000 GPUs that computational scientists use to perform scientific simu- lations and data analysis. Understanding of GPU reliability characteristics, however, is still in its nascent stage since GPUs have only recently been deployed at large-scale. This paper presents a detailed study of GPU errors and their impact on system operations and applications, describing experiences with the 18,688 GPUs on the Titan supercom- puter as well as lessons learned in the process of efficient operation of GPUs at scale. These experiences are helpful to HPC sites which already have large-scale GPU clusters or plan to deploy GPUs in the future.

Tiwari, Devesh↗

Single stage, low noise, advanced technology fan. Volume 5: Fan acoustics. Section 1: Results and analysis

The acoustic tests and data analysis for a 0.508-scale fan vehicle of a 111,300 newton (25,000 pound) thrust, full-size engine, which would have application on an advanced transport aircraft, is described. The single-stage advanced technology fan was designed to a pressure ratio of 1.8 at a tip speed of 503 m/sec (1,650 ft/sec) to achieve the desired pressure ratio in a single-stage fan with low radius ratio (0.38), and to maintain adequate stall margin. The fan has 44 tip-shrouded rotor blades and 90 outlet guide vanes. The two basic approaches taken in the acoustic design were: (1) minimization of noise at the source, and (2) suppression of the generated noise in the inlet and bypass exhaust duct. Suppression of the generated noise was accomplished in the inlet through use of the hybrid concept (wall acoustic treatment plus airflow acceleration suppression) and in the exhaust duct with extensive acoustic treatment including a splitter. The goal of the design was attainment of twenty effective perceived noise decibels (20 EPNdB) below current Federal Air Regulation noise standards for a full-scale fan at the takeoff, cutback, and approach conditions. The suppression goal of FAR 36-20 was not reached, but improvements in the technology of both front and aft fan-noise suppression were realized. The suppressed fan noise was shown to be consistent with the proposed federal regulation on aircraft noise.

Jutras, R. R.↗

A one-dimensional Fickian model to predict the Ga depth profiles in three-stage Cu(In,Ga)Se{sub 2}

We present a one-dimensional Fickian model that predicts the formation of a double Ga gradient during the fabrication of Cu(In,Ga)Se{sub 2} thin films by three-stage thermal co-evaporation. The model is based on chemical reaction equations, structural data, and effective Ga diffusivities. In the model, the Cu(In,Ga)Se{sub 2} surface is depleted from Ga during the deposition of Cu-Se in the second deposition stage, leading to an accumulation of Ga near the back contact. During the third deposition stage, where In-Ga-Se is deposited at the surface, the atomic fluxes within the growing layer are inverted. This results in the formation of a double Ga gradient within the Cu(In,Ga)Se{sub 2} layer and reproduces experimentally observed Ga distributions. The final shape of the Ga depth profile strongly depends on the temperatures, times and deposition rates used. The model is used to evaluate possible paths to flatten the marked Ga depth profile that is obtained when depositing at low substrate temperatures. We conclude that inserting Ga during the second deposition stage is an effective way to achieve this.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗

Delta L: An Apparatus for Measuring Macromolecule Crystal Growth Rates in Microgravity

Strongly diffracting high quality macromolecule crystals of suitable volume are keenly sought for X-ray diffraction analysis so that high-resolution molecular structure data can be obtained. Such data is of tremendous value to medical research, agriculture and commercial biotechnology. In previous studies by many investigators microgravity has been reported in some instances to improve biological macromolecule X-ray crystal quality while little or no improvement was observed in other cases. A better understanding of processes effecting crystal quality improvement in microgravity will therefore be of great benefit in optimizing crystallization success in microgravity. In ground based research with the protein lysozyme we have previously shown that a population of crystals grown under the same solution conditions, exhibit a variation in X-ray diffraction properties (Judge et al., 1999). We have also observed that under the same solution conditions, individual crystals will grow at slightly different growth rates. This phenomenon is called growth rate dispersion. For small molecule materials growth rate dispersion has been directly related to crystal quality (Cunningham et al., 1991; Ristic et al., 1991). We therefore postulate that microgravity may act to improve crystal quality by reducing growth rate dispersion. If this is the case then as different, Materials exhibit different degrees of growth rate dispersion on the ground then growth rate dispersion could be used to screen which materials may benefit the most from microgravity crystallization. In order to assess this theory the Delta L hardware is being developed so that macromolecule crystal growth rates can be measured in microgravity. Crystal growth rate is defined as the change or delta in crystal size (defined as a characteristic length, L) over time; hence the name of the hardware. Delta L will consist of an optics, a fluids, and a data acquisition sub-assemblies. The optics assembly will consist of a video microscope camera mounted on three axis computer controlled translation stages. The fluids assembly consists of macromolecule and precipitant reservoirs, a temperature controlled growth cell and waste container, The data acquisition is achieved by using a frame-gabber, with images being stored on a hard drive. In operation, macromolecule and precipitant solution will be injected into the temperature controlled growth cell. As macromolecule crystals grow, the video microscope camera controlled by the translation stages, will be used to locate and record images of individual crystals, returning to the same crystals at specific time intervals. The images will be stored on the hard drive and used to calculate the crystal growth rate. To prevent vibrations interfering in the crystal growth rate measurements (Snell et al., 1997) Delta L will be used in connection with the Glovebox Integrated Microgravity Isolation Technology (g-LIMIT) inside the Microgravity Science Glovebox (MSG), onboard the International Space Station (ISS).

Judge, Russell A.↗

Optimization of a Non-traditional Unsupervised Classification Approach for Land Cover Analysis

The conditions under which a hybrid of clustering and canonical analysis for image classification produce optimum results were analyzed. The approach involves generation of classes by clustering for input to canonical analysis. The importance of the number of clusters input and the effect of other parameters of the clustering algorithm (ISOCLS) were examined. The approach derives its final result by clustering the canonically transformed data. Therefore the importance of number of clusters requested in this final stage was also examined. The effect of these variables were studied in terms of the average separability (as measured by transformed divergence) of the final clusters, the transformation matrices resulting from different numbers of input classes, and the accuracy of the final classifications. The research was performed with LANDSAT MSS data over the Hazleton/Berwick Pennsylvania area. Final classifications were compared pixel by pixel with an existing geographic information system to provide an indication of their accuracy.

Boyd, R. K.↗

Improving the real-time probabilistic channel flood forecasting by incorporating the uncertainty of inflow using the particle filter

An accurate and reliable real-time flood forecast is crucial for mitigating flood disasters. The errors associated with the inflow boundary forcing data are considered as an important source of uncertainties in hydraulic model. In this paper, a real-time probabilistic channel flood forecasting model is developed with a novel function to incorporate the uncertainty of the forcing inflow. This new approach couples a hydraulic model with the particle filter (PF) data assimilation algorithm, a sequential Bayesian Monte Carlo method. The stage observations at hydrological stations are assimilated at each time step to update the model states in order to improve the next time step’s forecasting. This new approach is tested against a real flood event occurred in the upper Yangtze River. As compared with the open loop simulations, the evaluations of model performance with several deterministic and probabilistic metrics indicate that the accuracy of the ensemble mean prediction and the reliability of the uncertainty quantification are improved pronouncedly as a result of the PF assimilation. Further assessment of the prediction results at different lead times shows that the improvement of model performance deteriorates with the increase of the lead time due to the gradual diminishing of the updating effect for the initial conditions. Based on the analyses of the number of particles and the assimilation frequency, we find that the optimal number of particles can be determined by balancing the model performance and the computation cost, while a high assimilation frequency is preferred to incorporate the emerging observations to update the model states to match the real conditions.

Channel flood forecasting, probabilistic forecast,↗