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DOE OSTI2024

Learning new physics from data: A symmetrized approach

Thousands of person years have been invested in searches for new physics (NP), the majority of them motivated by theoretical considerations. Yet, no evidence of beyond the Standard Model physics has been found. This suggests that model-agnostic searches might be an important key to explore NP, and help discover unexpected phenomena which can inspire future theoretical developments. A possible strategy for such searches is identifying asymmetries between data samples that are expected to be symmetric within the Standard Model. We propose exploiting neural networks (NNs) to quickly fit and statistically test the differences between two samples. Our method is based on an earlier work, originally designed for inferring the deviations of an observed dataset from that of a much larger reference dataset. We present a symmetric formalism, generalizing the original one, avoiding fine-tuning of the NN parameters and any constraints on the relative sizes of the samples. Our formalism could be used to detect small symmetry violations, extending the discovery potential of current and future particle physics experiments.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

DOE OSTI2024

A New Vehicle-to-Vehicle Communication Technology Based on Binary Light Code

The proliferation of Connected and Autonomous Vehicles (CAVs) has necessitated the development of efficient, reliable communication methods between vehicles and their surroundings. This study presents a novel methodology, the VECTOR system, that addresses this need by converting dynamic vehicle data into a binary code and displaying it on an LED panel. The system involves a three-step process of data collection, polynomial fitting of velocity data, and encoding the polynomial parameters into binary form using a Cyclic Redundancy Check (CRC). The study also explores the practical application of this system by conducting experiments with modified Lincoln MKZ hybrids, demonstrating the feasibility and efficiency of this approach. The paper presents both the methodology and results of these experiments, further expanding upon the potential applications and implications for CAV technology. By comparing the final accuracy, we find this approach can achieve 80% of the original velocity data.

Ma, Ke↗

DOE OSTI2023

Low-Temperature Geothermal Resources: Relevant Data and PFA Methods to Reduce Development Risk

This project is part of a larger national effort focused on demonstrating the multi-faceted value of integrating low-temperature geothermal resources into national decarbonization strategies and community energy plans. Low-temperature geothermal resources are defined as reservoirs-natural or engineered-with temperatures < 150 degrees C. While the focus in the NREL effort is on geothermal heating and cooling (GHC), resources at the upper end of this temperature range can also be used for small-scale power generation. However, low-temperature geothermal resources have not been studied as extensively as higher-temperature geothermal resources. We identified three major classes of low-temperature geothermal play types: sedimentary basins, orogenic systems, and radiogenic systems. We developed workflows for evaluating the potential of these resources building off the Play Fairway Analysis (PFA) approach to de-risking geothermal exploration. This PFA-based approach to low-temperature geothermal resources includes: (1) identifying relevant data; (2) grouping and weighting of relevant datasets into PFA criteria (e.g., geological, risk, economic criteria); (3) developing favorability or common risk maps for low-temperature geothermal resources to identify potential locations for more focused data collection; and (4) estimating electric power generation and heating potential at those locations using the GeoRePORT Resource Size Assessment Tool. This project will facilitate future deployment of GHC by providing data, tools, and workflows applicable to low-temperature geothermal resources.

favorability maps↗

DOE OSTI2023

Low-Temperature Geothermal Resources: Relevant Data and PFA Methods to Reduce Development Risk: Preprint

favorability maps↗

DOE OSTI2022

Benchmarking structural evolution methods for training of machine learned interatomic potentials

When creating training data for machine-learned interatomic potentials (MLIPs), it is common to create initial structures and evolve them using molecular dynamics (MD) to sample a larger configuration space. Here, we benchmark two other modalities of evolving structures, contour exploration (CE) and dimer-method (DM) searches against MD for their ability to produce diverse and robust density functional theory training data sets for MLIPs. We also discuss the generation of initial structures which are either from known structures or from random structures in detail to further formalize the structure-sourcing processes in the future. The polymorph-rich zirconium-oxygen composition space is used as a rigorous benchmark system for comparing the performance of MLIPs trained on structures generated from these structural evolution methods. Using Behler–Parrinello neural networks as our MLIP models, we find that CE and the DM searches are generally superior to MD in terms of spatial descriptor diversity and statistical accuracy.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗

DOE OSTI2024

Dataset for "Evaluating Deep Learning Approaches for Predictions in Unmonitored Basins with Continental-scale Stream Temperature Models" Willard et al. (2024)

This data release provides all data and code used in the paper " "Evaluating Deep Learning Approaches for Predictions in Unmonitored Basins with Continental-scale Stream Temperature Models" Willard et al. (2024)" to model stream temperature, evaluate, and assess results. The associated manuscript explores current open questions in prediction in ungauged and unmonitored basins concerning top-down versus bottom-up approaches, tradeoffs between data available and input requirements, and the appropriate representation of catchment attributes as inputs to deep learning models. Modeling was done primarily with long short-term memory (LSTM) models, and stream site coverage spans 1362 locations across the conterminous United States. The data is organized into these items items:Code repository and data for the paper " "Evaluating Deep Learning Approaches for Predictions in Unmonitored Basins with Continental-scale Stream Temperature Models" Willard et al. (2024)".Code: stream_temp_ml_regionalization.zip contains the code repositoryData to run the code: - data_dir.zip -- contains all files that should be moved to the "DATA_DIR" variable defined in the "set_env_vars.sh" script in the code repository- metadata_dir.zip -- contains all files that should be moved to the "METADATA_DIR" variable defined in the "set_env_vars.sh" script in the code repository- error_analysis_attribute_and_groundwater_dir.zip - workflows for the extended error analysis by stream attribute and groundwater influenceData produced by the code and used in the paper:- outputs_dir.zip - contains model output and results (outputs_dir/results), model weights (outputs_dir/models), and all other outputs used for the paper including feature importances.To cite this code, please use the following BibTeX or MLA entries:bibtex:@misc{willard2024streamdata, author = {Jared Willard and Fabio Ciulla and Helen Weierbach and Vipin Kumar and Charuleka Varadharajan}, title = {Dataset for "Evaluating Deep Learning Approaches for Predictions in Unmonitored Basins with Continental-scale Stream Temperature Models"}, year = {2024}, doi = {10.15485/2448016}, publisher = {ESS-DIVE Repository}, url = {https://doi.org/10.15485/2448016}}MLA: Willard, Jared, et al. Dataset for "Evaluating Deep Learning Approaches for Predictions in Unmonitored Basins with Continental-scale Stream Temperature Models". 2024. ESS-DIVE Repository, doi:10.15485/2448016.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2021

A pre-training and self-training approach for biomedical named entity recognition

Named entity recognition (NER) is a key component of many scientific literature mining tasks, such as information retrieval, information extraction, and question answering; however, many modern approaches require large amounts of labeled training data in order to be effective. This severely limits the effectiveness of NER models in applications where expert annotations are difficult and expensive to obtain. In this work, we explore the effectiveness of transfer learning and semi-supervised self-training to improve the performance of NER models in biomedical settings with very limited labeled data (250-2000 labeled samples). We first pre-train a BiLSTM-CRF and a BERT model on a very large general biomedical NER corpus such as MedMentions or Semantic Medline, and then we fine-tune the model on a more specific target NER task that has very limited training data; finally, we apply semi-supervised self-training using unlabeled data to further boost model performance. We show that in NER tasks that focus on common biomedical entity types such as those in the Unified Medical Language System (UMLS), combining transfer learning with self-training enables a NER model such as a BiLSTM-CRF or BERT to obtain similar performance with the same model trained on 3x-8x the amount of labeled data. We further show that our approach can also boost performance in a low-resource application where entities types are more rare and not specifically covered in UMLS.

96 KNOWLEDGE MANAGEMENT AND PRESERVATION↗

DOE OSTI2022

Application of the metabolic modeling pipeline in KBase to categorize reactions, predict essential genes, and predict pathways in an isolate genome

The DOE Systems Biology Knowledgebase (KBase) platform offers a range of powerful tools for the reconstruction, refinement, and analysis of genome-scale metabolic models built from microbial isolate genomes. In this chapter, we describe and demonstrate these tools in action with an analysis of isoprene production in the Bacillus subtilis DSM genome. Two different methods are applied to build initial metabolic models for the DSM genome, then the models are gapfilled in three different growth conditions. Next, flux balance analysis (FBA) and flux variability analysis (FVA) techniques are applied to both study the growth of these models in minimal media and classify reactions within each model based on essentiality and functionality. The models are applied with the FBA method to predict essential genes, which are then compared to an updated list of essential genes obtained for B. subtilis 168, a very similar strain to the DSM isolate. The models are also applied to simulate Biolog growth conditions, and these results are compared with Biolog data collected for B. subtilis 168. Finally, the DSM metabolic models are applied to explore the pathways and genes responsible for producing isoprene in this strain. These studies demonstrate the accuracy and utility of models generated from the KBase pipelines, as well as exploring the tools available for analyzing these models.

DOE knowledgebase↗

DOE OSTI2019

Synthesis, structural characterization, and cytotoxic evaluation of chalcone derivatives

Chalcones containing amino or acetamide groups on ring A and electron donating/withdrawing groups on ring B have been shown to have great cytotoxic potential against human cancer cell lines. In this work, a series of twenty chalcones, including nine 1-(4′-aminophenyl)-3-(substituted aryl)-2-propen-1-ones (1–9), nine 1-(4′-acetamidophenyl)-3-(substituted aryl)-2-propen-1-ones (1a–9a), and two 1-(3′-methoxy-4′-hydroxyphenyl)-3-(substituted aryl)-2-propen-1-ones (10, 11), were synthesized and submitted for initial biological screening using HCT-116 cells. Among the evaluated compounds, chalcone 6a showed strong and selective activity against HCT-116 cells (IC{sub 50} = 2.37 ± 0.73 µM). The preliminary structure–activity relationship analysis indicated that the cytotoxic effect of these compounds might be attributed to the combined effect of two electron withdrawing groups: the nitro group (NO{sub 2}) at the meta-position of ring B and the acetyl group at the para-position of ring A. Moreover, chalcone 6a was able to induce G2/M cell cycle arrest and apoptosis at a concentration of 10 µM after 24 h of incubation. These data reinforce that compound 6a could be a promising lead compound for the future exploration of selective anti-colon carcinoma cancer agents.

60 APPLIED LIFE SCIENCES↗

DOE OSTI2025

First measurement of differential cross sections for muon neutrino charged current interactions on argon with a two-proton final state using the MicroBooNE detector

We present the first measurement of differential cross sections for charged-current muon neutrino interactions on argon with one muon, two protons, and no pions in the final state. These final states are dominated by two-nucleon knockout interactions, which are complicated to model and for which there is currently limited information about the characteristics of these interactions in existing neutrino-nucleus scattering data. Detailed investigations of two-nucleon knockout are vital to support upcoming experiments exploring the nature of the neutrino. Among the different kinematic quantities measured, the opening angle between the two protons, the angle between the total proton momentum and the muon, and the total transverse momentum of the final state system are most sensitive to the underlying physics processes as embodied in various theoretical models.

2-particle 2-hole states↗

DOE OSTI2026

Cracking the code of multi-layer films to promote circularity in single-use plastic packaging

Multi-layer film packaging (MLF) revolutionized food preservation by combining diverse material layers to optimize barrier properties, mechanical strength, and shelf-life. These materials are essential for transporting perishables across various climates and allow for access to fresh goods in “food deserts”, but they pose significant recycling challenges due to their structural complexity. This perspective examines key structure-property relationships governing barrier performance and highlights innovations in material design. We explore how machine learning can predict performance metrics and propose recyclable alternatives, integrating data-driven approaches with material science insights. By challenging the status quo of MLF design, we advocate for circularity in food packaging, inspiring innovation at the intersection of sustainability, material science, and artificial intelligence.

36 MATERIALS SCIENCE↗

DOE OSTI2025

Invariant discovery of features across multiple length scales: Applications in microscopy and autonomous materials characterization

Physical imaging is a foundational characterization method in areas from condensed matter physics and chemistry to astronomy and spans length scales from atomic to universe. Images encapsulate crucial data regarding atomic bonding, materials microstructures, and dynamic phenomena such as microstructural evolution and turbulence, among other phenomena. The challenge lies in effectively extracting and interpreting this information. Variational Autoencoders (VAEs) have emerged as powerful tools for identifying the underlying factors of variation in image data, providing a systematic approach to distilling meaningful patterns from complex data sets. However, a significant hurdle in their application is the definition and selection of appropriate descriptors reflecting local structures. Here, we introduce the scale-invariant VAE approach (SI-VAE) based on the progressive training of the VAE with the descriptors sampled at different length scales. The SI-VAE allows the discovery of the length scale-dependent factors of variation in the system. Here, we illustrate this approach using the ferroelectric domain images and generalize it to the movies of the electron-beam induced phenomena in graphene and topography evolution across combinatorial libraries. This approach can further be used to initialize the decision making in automated experiments including structure–property discovery and can be applied across a broad range of imaging methods. This approach is universal and can be applied to any spatially resolved data including both experimental imaging studies and simulations, and can be particularly useful for exploration of phenomena such as turbulence and scale-invariant transformation fronts.

36 MATERIALS SCIENCE↗

DOE OSTI2020

On single-crystal neutron-diffraction in DACs: quantitative structure refinement of light elements on SNAP and TOPAZ

Quantitative single crystal neutron-diffraction in diamond anvil cells has so far been limited by the neutron flux available at the various neutron sources. As a result, highly precise measurements of the exact position of light elements have not been possible preventing, for example, structural studies of hydrogen and hydrogen bonds under pressure. Here we report experiments carried out on SNAP at the Spallation Neutron Source (ORNL, TN, USA) to explore the possibility and current limits of such studies. Furthermore, we benchmarked the obtained data quality with reference experiments carried out on TOPAZ, a dedicated single-crystal instrument.We show that measuring single-crystal diffraction intensities on SNAP is possible to such a precision that we are able to resolve the hydrogen bonds in potassium dideuterium phosphate (DKDP) as well as in ice VI.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

DOE OSTI2020

Scaling the training of particle classification on simulated MicroBooNE events to multiple GPUs

Measurements in Liquid Argon Time Projection Chamber (LArTPC) neutrino detectors, such as the MicroBooNE detector at Fermilab, feature large, high fidelity event images. Deep learning techniques have been extremely successful in classification tasks of photographs, but their application to LArTPC event images is challenging, due to the large size of the events. Events in these detectors are typically two orders of magnitude larger than images found in classical challenges, like recognition of handwritten digits contained in the MNIST database or object recognition in the ImageNet database. Ideally, training would occur on many instances of the entire event data, instead of many instances of cropped regions of interest from the event data. However, such efforts lead to extremely long training cycles, which slow down the exploration of new network architectures and hyperparameter scans to improve the classification performance. We present studies of scaling a LArTPC classification problem on multiple architectures, spanning multiple nodes. The studies are carried out on simulated events in the MicroBooNE detector. We emphasize that it is beyond the scope of this study to optimize networks or extract the physics from any results here. Institutional computing at Pacific Northwest National Laboratory and the SummitDev machine at Oak Ridge National Laboratory’s Leadership Computing Facility have been used. To our knowledge, this is the first use of state-of-the-art Convolutional Neural Networks for particle physics and their attendant compute techniques onto the DOE Leadership Class Facilities. We expect benefits to accrue particularly to the Deep Underground Neutrino Experiment (DUNE) LArTPC program, the flagship US High Energy Physics (HEP) program for the coming decades.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

DOE OSTI2024

Exploring modified gravity: constraints on the μ and Σ parametrization with WMAP , ACT, and SPT

ABSTRACT The cosmic acceleration problem remains one of the most significant challenges in cosmology. One of the proposed solutions to this problem is the modification of gravity on large scales. In this paper, we explore the well-known μ–Σ parametrization scenarios and confront them with observational data, including the cosmic microwave background (CMB) radiation from the Wilkinson Microwave Anisotropy Probe (WMAP), Atacama Cosmology Telescope (ACT), and South Pole Telescope (SPT), as well as large-scale structure data from the Sloan Digital Sky Survey (SDSS; baryon acoustic oscillation + redshift-space distortion) and Pantheon supernova (SN) catalogue. We employ a Bayesian framework to constrain the model parameters and discuss the implications of our results on the viability of modified gravity theories. Our analysis reveals the strengths and limitations of the μ–Σ parametrization and provides valuable insights into the nature of gravity on cosmological scales. From the joint analysis of the ACT + WMAP + SDSS + SN, we find μ0 − 1 = 0.02 ± 0.19 and Σ0 − 1 = 0.021 ± 0.068 at 68 per cent confidence level (CL). In light of the SPT + WMAP + SDSS + SN, we find μ0 − 1 = 0.07 ± 0.18 and $\Sigma _0 -1 = -0.009^{+0.078}_{-0.11}$ at 68 per cent CL. In all the analyses carried out, we do not find any deviations from the theory of general relativity. Our results represent an observational update on the well-known μ–Σ parametrization in view of current CMB data, independent of and competitive with the constraints obtained with the Planck data.

79 ASTRONOMY AND ASTROPHYSICS↗

DOE OSTI2024

A novel Bayesian approach for decomposing the radio emission of quasars: I. Modelling the radio excess in red quasars

ABSTRACT Studies show that both radio jets from the active galactic nuclei (AGNs) and the star formation (SF) activity in quasar host galaxies contribute to the quasar radio emission; yet their relative contributions across the population remain unclear. Here, we present an improved parametric model that allows us to statistically separate the SF and AGN components in observed quasar radio flux density distributions, and investigate how their relative contributions evolve with AGN bolometric luminosity ($L_\mathrm{bol}$) and redshift (z) using a fully Bayesian method. Based on the newest data from LOw-Frequency ARray Two-metre Sky Survey data release 2, our model gives robust fitting results out to $z\sim 4$, showing a quasar host galaxy SF rate (SFR) evolution that increases with bolometric luminosity and with redshift out to $z\sim 4$. This differs from the global cosmic SFR density, perhaps due to the importance of galaxy mergers. The prevalence of radio AGN emissions increases with quasar luminosity, but has little dependence on redshift. Furthermore, our new methodology and large sample size allow us to subdivide our data set to investigate the role of other parameters. Specifically, in this paper, we explore quasar colour and demonstrate that the radio excess in red quasars is due to an enhancement in AGN-related emission, since the host galaxy SF contribution to the total radio emission is independent of quasar colour. We also find evidence that this radio enhancement occurs mostly in quasars with weak or intermediate radio power.

Yue, B. -H (ORCID:0009000989352929)↗

DOE OSTI2019

Optimizing galaxy samples for clustering measurements in photometric surveys

When analysing galaxy clustering in multiband imaging surveys, there is a trade-off between selecting the largest galaxy samples (to minimize the shot noise) and selecting samples with the best photometric redshift (photo-$z$) precision, which generally includes only a small subset of galaxies. In this paper, we systematically explore this trade-off. Our analysis is targeted towards the third-year data of the Dark Energy Survey (DES), but our methods hold generally for other data sets. Using a simple Gaussian model for the redshift uncertainties, we carry out a Fisher matrix forecast for cosmological constraints from angular clustering in the redshift range $z$ = 0.2–0.95. We quantify the cosmological constraints using a figure of merit (FoM) that measures the combined constraints on $Ωm$ and $σ_8$ in the context of Λ cold dark matter ($Λ$CDM) cosmology. We find that the trade-off between sample size and photo-z precision is sensitive to (1) whether cross-correlations between redshift bins are included or not, and (2) the ratio of the redshift bin width $δz$ to the photo-$z$ precision $σ_z$. When cross-correlations are included and the redshift bin width is allowed to vary, the highest FoM is achieved when $δz$ ~ $σ_z$. We find that for the typical case of 5-10 redshift bins, optimal results are reached when we use larger, less precise photo-z samples, provided that we include cross-correlations. For samples with higher $σ_z$, the overlap between redshift bins is larger, leading to higher cross-correlation amplitudes. This leads to the self-calibration of the photo-z parameters and therefore tighter cosmological constraints. These results can be used to help guide galaxy sample selection for clustering analysis in ongoing and future photometric surveys.

79 ASTRONOMY AND ASTROPHYSICS↗

DOE OSTI2019

AGN in dwarf galaxies: frequency, triggering processes and the plausibility of AGN feedback

Abstract While active galactic nuclei (AGN) are considered to be key drivers of the evolution of massive galaxies, their potentially significant role in the dwarf-galaxy regime (M* < 109 M⊙) remains largely unexplored. We combine optical and infrared data, from the Hyper Suprime-Cam (HSC) and the Wide-field Infrared Explorer, respectively, to explore the properties of ∼800 AGN in dwarfs at low redshift (z < 0.3). Infrared-selected AGN fractions are ∼10–30 per cent in dwarfs, which, for reasonable duty cycles, indicates a high black hole (BH)-occupation fraction. Visual inspection of the deep HSC images indicates that the merger fraction in dwarf AGN (∼6 per cent) shows no excess compared to a control sample of non-AGN, suggesting that the AGN-triggering processes are secular in nature. Energetic arguments indicate that, in both dwarfs and massive galaxies, bolometric AGN luminosities (LAGN) are significantly greater than supernova luminosities (LSN). LAGN/LSN is, in fact, higher in dwarfs, with predictions from simulations suggesting that this ratio only increases with redshift. Together with the potentially high BH-occupation fraction, this suggests that if AGN feedback is an important driver of massive-galaxy evolution, the same is likely to be true in the dwarf regime, contrary to our classical thinking.

Kaviraj, Sugata (ORCID:000000025601575X)↗