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Modeling the dosimetry of organ-at-risk in head and neck IMRT planning: An intertechnique and interinstitutional study

Purpose: To build a statistical model to quantitatively correlate the anatomic features of structures and the corresponding dose-volume histogram (DVH) of head and neck (HN) Tomotherapy (Tomo) plans. To study if the model built upon one intensity modulated radiation therapy (IMRT) technique (such as conventional Linac) can be used to predict anticipated organs-at-risk (OAR) DVH of patients treated with a different IMRT technique (such as Tomo). To study if the model built upon the clinical experience of one institution can be used to aid IMRT planning for another institution. Methods: Forty-four Tomotherapy intensity modulate radiotherapy plans of HN cases (Tomo-IMRT) from Institution A were included in the study. A different patient group of 53 HN fixed gantry IMRT (FG-IMRT) plans was selected from Institution B. The analyzed OARs included the parotid, larynx, spinal cord, brainstem, and submandibular gland. Two major groups of anatomical features were considered: the volumetric information and the spatial information. The volume information includes the volume of target, OAR, and overlapped volume between target and OAR. The spatial information of OARs relative to PTVs was represented by the distance-to-target histogram (DTH). Important anatomical and dosimetric features were extracted from DTH and DVH by principal component analysis. Two regression models, one for Tomotherapy plan and one for IMRT plan, were built independently. The accuracy of intratreatment-modality model prediction was validated by a leave one out cross-validation method. The intertechnique and interinstitution validations were performed by using the FG-IMRT model to predict the OAR dosimetry of Tomo-IMRT plans. The dosimetry of OARs, under the same and different institutional preferences, was analyzed to examine the correlation between the model prediction and planning protocol. Results: Significant patient anatomical factors contributing to OAR dose sparing in HN Tomotherapy plans have been analyzed and identified. For all the OARs, the discrepancies of dose indices between the model predicted values and the actual plan values were within 2.1%. Similar results were obtained from the modeling of FG-IMRT plans. The parotid gland was spared in a comparable fashion during the treatment planning of two institutions. The model based on FG-IMRT plans was found to predict the median dose of the parotid of Tomotherapy plans quite well, with a mean error of 2.6%. Predictions from the FG-IMRT model suggested the median dose of the larynx, median dose of the brainstem and D2 of the brainstem could be reduced by 10.5%, 12.8%, and 20.4%, respectively, in the Tomo-IMRT plans. This was found to be correlated to the institutional differences in OAR constraint settings. Re-planning of six Tomotherapy patients confirmed the potential of optimization improvement predicted by the FG-IMRT model was correct. Conclusions: The authors established a mathematical model to correlate the anatomical features and dosimetric indexes of OARs of HN patients in Tomotherapy plans. The model can be used for the setup of patient-specific OAR dose sparing goals and quality control of planning results. The institutional clinical experience was incorporated into the model which allows the model from one institution to generate a reference plan for another institution, or another IMRT technique.

62 RADIOLOGY AND NUCLEAR MEDICINE↗

Ionic Liquids as Additives to Polystyrene- Block -Poly(Methyl Methacrylate) Enabling Directed Self-Assembly of Patterns with Sub-10 nm Features

Polystyrene- block -poly(methyl methacrylate) (PS- b -PMMA) is one of the prototypical block copolymers in directed self-assembly (DSA) research and development, with standardized protocols in place for processing on industrially relevant 300 mm wafers. Scaling of DSA patterns to pitches below 20 nm using PS- b -PMMA, however, is hindered by the relatively low Flory–Huggins interaction parameter, $χ$. In this work, we investigate the approach of adding small amounts of ionic liquids (ILs) into PS- b -PMMA, which selectively segregates into the PMMA domain and effectively increases the $χ$ parameter and thus the pattern resolution. The amount of IL additive is small enough to result in limited changes in PS- b -PMMA’s surface and interfacial properties, thus maintaining industry-friendly processing by thermal annealing with a free surface. Three different ILs are studied comparatively regarding their compositional process window, capability of increasing $χ$, and thermal stability. By adding ~3.1 vol % of the champion IL into a low-molecular-weight PS- b -PMMA ( M n = 10.3k- b -9.5k), we demonstrated DSA on chemically patterned substrates of lamellar structures with feature sizes <8.5 nm. Compatibility of the PS- b -PMMMA/IL blends with the standardized processes that have been previously developed suggests that such blend materials could provide a drop-in solution for sub-10 nm lithography with the processing advantages of PS- b -PMMA.

36 MATERIALS SCIENCE↗

Structural, mechanical, and antibacterial features of curcumin/polyurethane nanocomposites

Various types of bacteria inhabit many surfaces thus causing problems which can have very strong impact on human health. Here we present a study of photophysical, mechanical, and antibacterial properties of curcumin/polyurethane nanocomposites prepared by swell-encapsulation-shrink method. The prepared nanocomposites have been characterized for degree of swelling, surface morphology, mechanical properties, chemical contents, photoluminescence, hydrophobicity, potentials for singlet oxygen generation, and antibacterial activity. Dynamic mechanical analysis has shown slight changes of glass temperature of curcumin/polyurethane nanocomposites due to blue light irradiation. It was found that nanocomposites have very strong photoluminescence, become photoactive upon blue light irradiation at 470 nm and generate singlet oxygen. Conducted antibacterial tests have shown very strong activity of these nanocomposites especially toward Escherichia coli. These bacteria strains have been eliminated completely only after 1 h irradiation by blue light. © 2018 Wiley Periodicals, Inc. J. Appl. Polym. Sci. 2018, 47283. © 2018 Wiley Periodicals, Inc.

36 MATERIALS SCIENCE↗

Building morphologies of the USA structures database; a gauntlet feature set

In recent years there has been a proliferation of methods and data to extract building footprints from satellite imagery. However there has been very little effort to provide additional insight about these buildings beyond their spatial location and shape. Features derived from their geometries can be used to better characterize these buildings which are critical for further research and development. In this work a set of 65 unique features for every building for more than 131 million buildings covering the US has been developed. This rich feature dataset will enable researchers, policymakers and various agencies to derive additional building characteristics like height, occupancy type, and help to gain valuable and new insights of the built environment.

Environmental sciences↗

InGaN: Direct correlation of nanoscopic morphology features with optical and structural properties

A comprehensive study on the impact of growth modes on the structural and optical properties of thick InGaN layers suitable for photovoltaic application is presented. Samples grown by metalorganic vapour phase epitaxy with different growth rates and thicknesses have been analyzed. The application of slow growth rates result in smooth layers while higher growth rates induce a meandering surface morphology. Using low-temperature cathodoluminescence, a direct correlation of the morphology to local luminescent properties is obtained: the top of meandering structures reveals a spectrally red-shifted emission compared to the emission wavelength expected from the average indium content determined by X-ray diffraction. The origin of this shift is identified and explained by increased indium incorporation on top of the meander due to a spatially localized compositional pulling effect.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗

Features of the band structure and conduction mechanisms in the n-HfNiSn semiconductor heavily doped with Ru

The crystal and electronic structure and energy and kinetic properties of the n-HfNiSn semiconductor heavily doped with a Ru acceptor impurity are investigated in the temperature and Ru concentration ranges T = 80–400 K and N{sub A}{sup Ru} ≈ 9.5 × 10{sup 19}−5.7 × 10{sup 20} cm{sup −3} (x = 0–0.03), respectively. The mechanism of structural-defect generation is established, which changes the band gap and degree of compensation of the semiconductor and consists in the simultaneous concentration reduction and elimination of donor structural defects by means of the displacement of ∼1% of Ni atoms from the Hf (4a) positions, the generation of acceptor structural defects upon the substitution of Ru atoms for Ni atoms in the 4c positions, and the generation of donor defects in the form of vacancies in the Sn (4b) positions. The calculated electronic structure of HfNi{sub 1−x}Ru{sub x}Sn is consistent with the experiment. The results obtained are discussed within the Shklovsky-Efros model for a heavily doped and compensated semiconductor.

36 MATERIALS SCIENCE↗

Features of the band structure and conduction mechanisms of n-HfNiSn semiconductor heavily Lu-doped

The crystal and electronic structures, energy, kinetic, and magnetic characteristics of n-HfNiSn semiconductor heavily doped with a Lu acceptor impurity in the ranges T = 80–400 K and N{sub A}{sup Lu} ≈ 1.9 × 10{sup 20}−1.9 × 10{sup 21} cm{sup −3} (x = 0.01–0.10) at H ≤ 10 kG is studied. The nature of the structural-defect generation mechanism leading to changes in the band gap and the degree of semiconductor compensation is determined. Its essence is the simultaneous reduction and elimination of donor-type structural defects due to the displacement of ∼1% of Ni atoms from the Hf (4a) site, the generation of acceptor-type structural defects by substituting Ni atoms with Lu atoms at the 4c site, and the generation of donor-type defects such as vacancies at the Sn (4b) site. The results of calculations of the electronic structure of Hf{sub 1−x}Lu{sub x}NiSn are in agreement with experimental data. The results are discussed within the model of a heavily doped and compensated Shklovskii-Efros semiconductor.

36 MATERIALS SCIENCE↗

Features of the band structure and conduction mechanisms of n-HfNiSn heavily doped with Y

The crystalline and electronic structures, energy, kinetic, and magnetic characteristics of n-HfNiSn semiconductor heavily doped with Y acceptor impurity are studied in the ranges: T = 80–400 K, N{sub A}{sup Y} ≈ 1.9 × 10{sup 20}–5.7 × 10{sup 21} cm{sup –3} (x = 0.01–0.30), and H ≤ 10 kG. The nature of the mechanism of structural defect generation is determined, which leads to a change in the band gap and the degree of semiconductor compensation, the essence of which is the simultaneous reduction and elimination of structural donor-type defects as a result of the displacement of ~1% of Ni atoms from the Hf (4a) site, and the generation of structural acceptor-type defects by substituting Hf atoms with Y atoms at the 4a site. The results of calculations of the electronic structure of Hf{sub 1–x}Y{sub x}NiSn are in agreement with the experimental data. The discussion is performed within the Shklovskii–Efros model of a heavily doped and compensated semiconductor.

36 MATERIALS SCIENCE↗

X-Ray Diffraction Analysis of Features of the Crystal Structure of GaN/Al{sub 0.32}Ga{sub 0.68}N HEMT-Heterostructures by the Williamson–Hall Method

The fitting of θ/2θ and ω peaks in X-ray diffraction curves is shown to be most accurate in the case of using an inverse fourth-degree polynomial or probability density function with Student’s distribution (Pearson type VII function). These functions describe well both the highest-intensity central part of the experimental peak and its low-intensity broadened base caused by X-ray diffuse scattering. The mean microdeformation ε and mean vertical domain size D are determined by the Williamson–Hall method for layers of GaN (ε ≈ 0.00006, D ≈ 200 nm) and Al{sub 0.32}Ga{sub 0.68}N (ε = 0.0032 ± 0.0005, D = 24 ± 7 nm). The D value obtained for the Al{sub 0.32}Ga{sub 0.68}N layer is most likely to result from the nominal thickness of this layer, which is 11 nm.

36 MATERIALS SCIENCE↗

Specific Features of the Electron Structure of ZnTPP Aggregated Forms: Data of Optical Measurements and Quantum-Chemical Calculations

Zinc tetraphenylporphyrin (ZnTPP) films and ZnTPP-based composites are promising materials of organic photonics. Porphyrins are inclined towards self-assembly and the formation of molecular ensembles or differently structured aggregates. The energies of the formation of aggregates and ordered structures and modifications of their electron structures compared to that of a free ZnTPP molecule have not been adequately explored. In the study, the first comprehensive investigation of the structure, absorption and luminescence spectra, and photoluminescence kinetics of structurally perfect ZnTPP thin films produced under quasi-equilibrium conditions in vacuum is conducted. It is shown that changes in the absorption spectra and the red shift of the luminescence spectra of films by 0.15 eV from the spectra observed for ZnTPP solutions in toluene can be interpreted as a result of the formation of an ordered thin-film structure through the dimerization of porphyrin planar molecules under nearly equilibrium conditions. The optimal geometric structure, the energy of the ground state, and the electronic spectrum of excitations of the dimerized (ZnTPP){sub 2} state are calculated in the context of density functional theory and time-dependent density functional theory. The energy gain on the formation of a dimer of symmetry C{sub i} compared to two separate molecules is 0.23 eV per dimer; the HOMO–LUMO gap for the dimer is decreased by 70 meV. The radiative emission time in the ordered solid phase is an order of magnitude shorter than that in the solution in toluene and corresponds to 277 ps, which is typical of J aggregates of porphyrins.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗

Specific Features of the Domain Structure of BaTiO{sub 3} Crystals during Thermal Heating and Cooling

This paper presents the results of the study of the domain structure of barium titanate crystals in a wide temperature range including the Curie point (T{sub C}) using the polarization-optical method in the reflected light and the force microscopy of the piezoelectric response. It is shown that a new a–c domain structure forms during cyclic heating of the crystal above T{sub C} and subsequent cooling to the ferroelectric phase. The role of uncompensated charges appeared on the crystal surface during the phase transition and their influence on the formation of the domain structure during cooling are discussed.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗

Utah FORGE: Well 16B(78)-32 Drill Core Fracture Analysis Images and Data

This dataset contains drilling core data from well 16B(78)-32, including PDF documents with flattened core images annotated by feature type and core interval, as well as spreadsheets detailing feature morphologies by depth, planar feature measurements, and planar feature orientations rotated to in situ conditions. Core was recovered from three intervals, one per stimulation stage, in the crystalline rocks affected by the stimulation of well 16A(78)-32. Seven core runs were conducted, yielding 135.8 feet of recovered core. Features in the core were categorized into planar fractures, semi-planar fractures, unbroken mineralized fractures, rough fractures, curviplanar fractures, concave-convex surfaces, and planar compositional features such as mylonite or dike-like structures. Planar features were measured while the core was positioned horizontally, with the core axis aligned to a downhole azimuth of 42 degrees. Planar core measurements from stimulations 2 and 3 that could be confidently correlated with FMI data were rotated to in situ orientations. This was done by rotating the planes along vertical and horizontal axes to match the azimuth and inclination data recorded in the directional survey of well 16B(78)-32, as well as applying an axial rotation to resemble the fracture orientations observed in the FMI log at corresponding depths. Coherent sets of planar fracture measurements were made by aligning the core within each 3-foot section of the dissected core barrel, and between adjacent 3-foot sections within a core run by matching rock fabrics, saw cuts and/or tool marks. Where coherent fracture measurements could not be made within a core run, data sets are denoted by a subscript (i.e. 2-Ta and 2-Tb both come from tangent core run number 2).

15 GEOTHERMAL ENERGY↗

Study of certain features of the electronic structure of the ternary alloys Ni2(Mn, Fe) and Ni3(Mn, Co)

The changes in electronic structure related to transport processes occurring during the alloying of he alloy Ni3Mn with iron and cobalt, and the ordering of the ternary alloys thus formed are presented. The Hall effect, the absolute thermal emf, the internal saturation induction, the Nernst-Ettingshausen constant, and the electrical resistivity were measured. Results show a decrease in the contribution of hole sections of the Fermi surface to the transport process occurs together with a considerable increase in the contribution of electron sections. In this case, the mobility of 3 dimensional holes decreases and the mobility of 4s electrons increases considerably.

Zhukova, V. M.↗

Flexibility and Performance of Parallel File Systems

As we gain experience with parallel file systems, it becomes increasingly clear that a single solution does not suit all applications. For example, it appears to be impossible to find a single appropriate interface, caching policy, file structure, or disk-management strategy. Furthermore, the proliferation of file-system interfaces and abstractions make applications difficult to port. We propose that the traditional functionality of parallel file systems be separated into two components: a fixed core that is standard on all platforms, encapsulating only primitive abstractions and interfaces, and a set of high-level libraries to provide a variety of abstractions and application-programmer interfaces (API's). We present our current and next-generation file systems as examples of this structure. Their features, such as a three-dimensional file structure, strided read and write interfaces, and I/O-node programs, are specifically designed with the flexibility and performance necessary to support a wide range of applications.

Kotz, David↗

Quantifying Wrinkle Features of Thin Membrane Structures

For future micro-systems utilizing membrane based structures, quantified predictions of wrinkling behavior in terms of amplitude, angle and wavelength are needed to optimize the efficiency and integrity of such structures, as well as their associated control systems. For numerical analyses performed in the past, limitations on the accuracy of membrane distortion simulations have often been related to the assumptions made. This work demonstrates that critical assumptions include: effects of gravity, supposed initial or boundary conditions, and the type of element used to model the membrane. In this work, a 0.2 m x 02 m membrane is treated as a structural material with non-negligible bending stiffness. Finite element modeling is used to simulate wrinkling behavior due to a constant applied in-plane shear load. Membrane thickness, gravity effects, and initial imperfections with respect to flatness were varied in numerous nonlinear analysis cases. Significant findings include notable variations in wrinkle modes for thickness in the range of 50 microns to 1000 microns, which also depend on the presence of an applied gravity field. However, it is revealed that relationships between overall strain energy density and thickness for cases with differing initial conditions are independent of assumed initial conditions. In addition, analysis results indicate that the relationship between wrinkle amplitude scale (W/t) and structural scale (L/t) is independent of the nonlinear relationship between thickness and stiffness.

Jacobson, Mindy B.↗

The SEEDS of Planet Formation: Observations of Transitional Disks

As part of its 5-year study, the Strategic Exploration of Exoplanets and Disk Systems (SEEDS) has already observed a number of YSOs with circumstellar disks, including 13 0.5- 8 Myr old A-M stars with indications that they host wide gaps or central cavities in their circumstellar disks in millimeter or far-IR observations, or from deficits in warm dust thermal emission. For 8 of the disks, the 0.15" inner working angle of HiCIAO+A0188 samples material in the millimeter or mid-IR identified cavity. In one case we reprt detection of a previously unrecognized wide gap. For the remaining 4 stars, the SEEDS data sample the outer disk: in 3 cases, we present the first NIR imagery of the disks. The data for the youngest sample members (less than 1-2 Myr) closely resemble coeval primordial disks. After approximately 3 Myr, the transitional disks show a wealth of structure including spiral features, rings, divots, and in some cases, largely cleared gaps in the disks which are not seen in coeval primordial disks. Some of these structural features are predicted consequences of lovianmass planets having formed in the disk, while others are novel features. We discuss the implications for massive planet formation timescales and mechanisms.

Grady, Carol↗

The SEEDS of Planet Formation: Observations of Transitional Disks

As part of its 5-year study, the Strategic Exploration of Exoplanets and Disk Systems (SEEDS) has already observed a number of YSOs with circumstellar disks, including 13 0.5-8 Myr old A-M stars with indications that they host wide gaps or central cavities in their circumstellar disks in millimeter or far-IR observations, or from deficits in warm dust thermal emission. For 8 of the disks, the 0.15" inner working angle of HiCIAO+A0188 samples material in the millimeter or mid-IR identified cavity. In one case we report detection of a previously unrecognized wide gap. For the remaining 4 stars, the SEEDS data sample the outer disk: in 3 cases, we present the first NIR imagery of the disks. The data for the youngest sample members 1-2 Myr) closely resemble coeval primordial disks. After approximately 3 Myr, the transitional disks show a wealth of structure including spiral features, rings, divots, and in some cases, largely cleared gaps in the disks which are not seen in coeval primordial disks. Some of these structural features are predicted consequences of Jovian-mass planets having formed in the disk, while others are novel features. We discuss the implications for massive planet formation timescales and mechanisms.

Grady, Carol A.↗