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At least 1,495 records · Page 83

Investigation of the effect of taurine supplementation on muscle taurine content in the mdx mouse model of Duchenne muscular dystrophy using chemically specific synchrotron imaging

Duchenne muscular dystrophy (DMD) is a lethal genetic muscle wasting disorder, which currently has no cure. Supplementation with the drug taurine has been shown to offer therapeutic benefit in the mdx model for DMD, however the mechanism by which taurine protects dystrophic muscle is not fully understood. Mdx muscle is deficient in taurine, however it is not known if this deficiency occurs in the extracellular space, in other cells present in the tissue (such as immune cells) or in the myofibre itself. Likewise, the tissue location of taurine enrichment in taurine treated mdx muscle is not known. In this study we applied X-ray absorption near edge spectroscopy (XANES) at the sulfur K-edge in an imaging format to determine taurine distribution in muscle tissue. XANES is the only technique currently capable of imaging taurine directly in muscle tissue, at a spatial resolution approaching myocyte cell size (20–50 μm). Using a multi-modal approach of XANES imaging and histology on the same tissue sections, we show that in mdx muscle, it is the myofibres that are deficient in taurine, and taurine supplementation ameliorates this deficiency. Increasing the taurine content of mdx myofibres was associated with a decrease in myofibre damage (as shown by the percentage of intact myofibres) and inflammation. These data presented here will help drive future studies to better elucidate the molecular mechanisms through which taurine protects dystrophic muscle; they also support the continued investigation of taurine as a therapeutic intervention for DMD.

59 BASIC BIOLOGICAL SCIENCES↗

High-fidelity first principles nonadiabaticity: diabatization, analytic representation of global diabatic potential energy matrices, and quantum dynamics

We report nonadiabatic dynamics, which goes beyond the Born–Oppenheimer approximation, has increasingly been shown to play an important role in chemical processes, particularly those involving electronically excited states. Understanding multistate dynamics requires rigorous quantum characterization of both electronic and nuclear motion. However, such first principles treatments of multi-dimensional systems have so far been rather limited due to the lack of accurate coupled potential energy surfaces and difficulties associated with quantum dynamics. In this Perspective, we review recent advances in developing high-fidelity analytical diabatic potential energy matrices for quantum dynamical investigations of polyatomic uni- and bi-molecular nonadiabatic processes, by machine learning of high-level ab initio data. Special attention is paid to methods of diabatization, high fidelity construction of multi-state coupled potential energy surfaces and property surfaces, as well as quantum mechanical characterization of nonadiabatic nuclear dynamics. To illustrate the tremendous progress made by these new developments, several examples are discussed, in which direct comparison with quantum state resolved measurements led to either confirmation of the observation or sometimes reinterpretation of the experimental data. The insights gained in these prototypical systems greatly advance our understanding of nonadiabatic dynamics in chemical systems.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Equation of state for 304L stainless steel

Here, a new equation of state for 304L stainless steel has been constructed and entered in the Los Alamos National Laboratory SESAME database with material ID 4273. The equation of state is based on a multiphase approach. The solid and liquid phases were fitted to available experimental data for thermal expansion, heat capacity, and shock Hugoniot, as well as to data from density functional theory calculations of the cold curve and quantum molecular dynamics of the liquid regime. The electronic thermal contribution over the entire equation of state range is based on Tartarus (Green’s functions) average atom calculations. For this low-carbon stainless steel both the density functional and electronic thermal calculations are comprised of 19 wt% Cr, 10 wt% Ni, and the remainder Fe.

36 MATERIALS SCIENCE↗

3D track reconstruction of low-energy electrons in the MIGDAL low pressure optical time projection chamber

Here, we demonstrate three-dimensional track reconstruction of electrons in a low pressure (50 Torr) optical TPC consisting of two glass GEMs with an ITO strip readout in CF 4 and CF 4 /Ar mixtures. The reconstructed tracks show a variety of event topologies, including short tracks from photoelectrons induced by 55 Fe 5.9 keV X-rays and long tracks from gamma ray interactions and beta decays. Algorithms for event identification and track ridge detection are discussed as well as multiple methods for integrating information from the camera image and ITO waveforms with the goal of full 3D reconstruction of the track.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

AL-ASMR: Active Learning of Atomistic Surrogate Models for Rare Events

Atomistic simulation with artificial intelligence (AI) is an emerging tool for understanding materials' properties and behaviors and predicting novel materials with optimized/targeted properties. Neural network potentials (NNPs) are outstanding in this field as they have shown a comparable accuracy to ab initio electronic structure calculations for reproducing potential energy surfaces while being several orders of magnitude faster. However, such NNPs can perform poorly outside of their training domain and typically fail catastrophically in the prediction of rare events in molecular dynamics (MD) simulations. For effective AL loops to distinguish the informative data from enhanced sampled configurations, we developed a decision engine by configurational similarity and uncertainty quantification (UQ) with data augmentation.

Jung, Gang Seob↗

RAS Protein Molecular Dynamics Simulations

This dataset contains 6401 files that describe parameters and other inputs for running molecular dynamics computer simulations of Ras proteins associated with a lipid-based cell membrane model in water, as well as resulting time-trajectories of atomic motion in these simulations. Specifically, the content includes: (a) 21 files containing generalized force field parameters, and (b) 22 files of similar format and content for each of 290 separate molecular dynamics simulations (22 ´ 290 = 6,380). The total size of this data set is 1.0 TB.

59 BASIC BIOLOGICAL SCIENCES↗

Moisture Metaphenome Incubation Analysis Results

The Birch effect, a pulse of CO2 release that occurs when dry soil is rewet, is commonly observed, yet the underlying biogeochemistry remains elusive. Using multi-omics data, real-time mass spectrometry and modeling approaches, we investigated the molecular response to rewetting of a soil microbiome exposed to drought for one and two weeks. The microbiome response was evaluated through analysis of transcript, protein, metabolite, and respiration profiles and metabolic modeling using an enhanced version of the Metabolite Expression Metabolic Network Integration for Pathway Identification and Selection (MEMPIS) algorithm (Roy Chowdhury et al, mSystems, 2019).

Lipton, Mary S [Pacific Northwest National Laborat↗

Applications of spectroscopy to remote determination of water quality

The use of remote laser Raman and molecular spectroscopic techniques to measure water quality is examined. Measurements cover biological, chemical, and physical properties of the water. Experimental results show chemical properties are harder to obtain remotely than biological or physical properties and that molecular spectroscopy seems to be the best method for obtaining water quality data.

Goldberg, M. C.↗

Solar flux variation of the thermospheric molecular oxygen density

The paper presents measurements of the thermospheric molecular oxygen density obtained from the Atmosphere Explorer (AE) satellites and composition data obtained from rocket-based experiments which provide information on the distribution of O2 between 120 and 200 km as a function of solar flux. The rocket experiment data can be analyzed for long-term variations, which show that the O2 density at 200 km shows little variation but at 120 km decreases approximately 30% for the F sub 10.7-cm flux.

Kayser, D. C.↗

Observational data needs useful for modeling the coma

A computer model of comet comae is described; results from assumed composition of frozen gases are summarized and compared to coma observations. Restrictions on relative abundance of some frozen constituents are illustrated. Modeling, when tightly coupled to observational data, can be important for comprehensive analysis of observations, for predicting undetected molecular species and for improved understanding of coma and nucleus. To accomplish this, total gas production rates and relative elemental abundances of H:C:N:O:S are needed as a function of heliocentric distance of the comet. Also needed are relative column densitites and column density profiles with well defined diaphragm range and pointing position on the coma. Production rates are less desirable since they are model dependent. Total number (or upper limits) of molecules in the coma and analysis of unidentified spectral lines are needed also.

Huebner, W. F.↗

Analysis of nitrogen and oxygen far ultraviolet auroral emissions

Far ultraviolet observations of the auroral and airglow provide quantitative diagnostics of atmospheric abundances, energy deposition, and excitation processes because many atmospheric species have resonance transitions in this spectral region. The spectroscopy of an active auroral arc observed above Fort Churchill on March 29, 1978, has been discussed by Feldman and Gentieu (1982). The present investigation attempts to quantify the measurements with the aid of a self-consistent approach used by Meier et al. (1980). It is shown that the primary electron spectrum has a characteristic energy of 1.75-2.5 keV, corresponding to energy deposition rates of 5-8 erg/(sq cm-sec). Atomic nitrogen emissions resulting from molecular dissociative excitation show no evidence of multiple scattering, in contrast to data from other auroras.

Meier, R. R.↗

A case study of the energy dissipation of the gravity wave field based on satellite altimeter measurements

Wave breaking is proposed as the primary energy dissipation mechanism for the gravity wave field. The energy dissipation rate is calculated based on the statistical model proposed by Longuet-Higgins (1969) with a modification of the breaking criterion incorporating the surface stress according to Phillips and Banner (1974). From this modified model, an analytic expression is found for the wave attenuation rate and the half-life time of the wave field which depend only on the significant slope of the wave field and the ratio of friction velocity to initial wave phase velocity. These expressions explain why the freshly generated wave field does not last long, but why swells are capable of propagating long distances without substantial change in energy density. It is shown that breaking is many orders of magnitude more effective in dissipating wave energy than the molecular viscosity, if the significant slope is higher than 0.01. Limited observational data from satellite and laboratory are used to compare with the analytic results, and show good agreement.

Huang, N. E.↗

Polyimide matrix resins for up to 700 deg F service

TRW is in the process of data accumulation that strongly indicates that incorporation of the perfluorsisopropylidene linkage in molecular structures other than those employed in DU Pont's NR-150B polyimides likewise yield polymers demonstrating extremely high thermo-oxidative stability. Polyimide synthetic and characterization studies conducted to date on new polymers incorporating the perfluoroisopropylidene linkage are presented and discussed.

Jones, R. J.↗

Processing Science and Technology

The heat capacity at constant pressure,Cp, of poly-p-xylylene (PPX) was measured from 220 to 625 degrees K using differential scanning calorimetry. The heat capacities at constant volume, Cv, of both PPX and its isomer polystyrene (PS were interpreted using literature data on full normal mode calculations for PS and estimates from low molecular weight analogues for PPX for the 39 group vibrations. Nine skeletal vibrations were used with theta sub 1 and theta sub 3 temperatures of 534.5 degrees K and 43.1 degrees K for PS. It was also possible to calculate a heat capacity contribution of a phenylene group within a polymer chain. Single 48-vibration theta sub 1 temperatures of 3230 degrees K for PS and 2960 degrees K for PPX are sufficient to describe Cv above 220 degrees K. Below 140 deg K, PS heat capacity shows deviations from the Tarasov treatment.

Source record↗

Degradation studies of SMRM teflon

Teflon samples returned from the Solar Max Satellite (SMS) suffered noticeable damage such as cracking and yellowing. This is in contrast to teflon exposed aboard STS-5 and STS-8 which showed no detectable changes. Selected teflon tape samples from SMS were studied to evaluate the extent and mechanism of degradation. ESCA studies revealed that these teflon samples contain hydrocarbon segments which were susceptible to oxygen atom degradation. Mechanical measurements also showed bulk property changes as a result of LEO exposure. A molecular model of material and energetic oxygen atom interaction was proposed. SMS data and the importance of developing correlation between accelerated exposure data from STS and ground-based testing and real time data will be presented.

Liang, Ranty H.↗

Search for volatiles on icy satellites. I - Europa

NASA IRTF reflectance spectra of unprecedented precision, obtained for the leading and trailing sides of Europa, are presently noted to no longer show the apparent absorptions seen in 1980 and 1985. It is presently suggested that if the weak absorptions seen in the 1980 and 1985 data are real, they may indicate the transient spectroscopic presence of a molecular component on Europa's trailing side that differs from the water ice known to be the dominant constituent of the surface.

Brown, Robert Hamilton↗

Shock temperature measurements of planetary ices - NH3, CH4, and 'synthetic Uranus'

Shock temperature measurements have been performed on several materials which have relevance to the modeling of the outer planets. These materials are methane, ammonia and a mixture of water, ammonia, and isopropanol known as synthetic Uranus. Temperatures have been measured in these materials over the pressure range 33-76 GPa for which there also exists measurements of equation of state and electrical conductivity. The temperatures are found to agree well with available calculations, with small discrepancies between data and theory ascribed to energy absorbing processes such as dissociation and molecular ionization.

Radousky, H. B.↗