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At least 1,495 records · Page 83

Long-term Cosmetic Outcomes and Toxicities of Proton Beam Therapy Compared With Photon-Based 3-Dimensional Conformal Accelerated Partial-Breast Irradiation: A Phase 1 Trial

Purpose: To present long-term outcomes of a prospective feasibility trial using either protons or 3-dimensional conformal photon-based (accelerated partial-breast irradiation [APBI]) techniques. Methods and Materials: From October 2003 to April 2006, 98 evaluable patients with stage I breast cancer were treated with APBI (32 Gy in 8 fractions given twice daily) on a prospective clinical trial: 19 with proton beam therapy (PBT) and 79 with photons or mixed photons/electrons. Median follow-up was 82.5 months (range, 2-104 months). Toxicity and patient satisfaction evaluations were performed at each visit. Results: At 7 years, the physician rating of overall cosmesis was good or excellent for 62% of PBT patients, compared with 94% for photon patients (P=.03). Skin toxicities were more common for the PBT group: telangiectasia, 69% and 16% (P=.0013); pigmentation changes, 54% and 22% (P=.02); and other late skin toxicities, 62% and 18% (P=.029) for PBT and photons, respectively. There were no significant differences between the groups in the incidences of breast pain, edema, fibrosis, fat necrosis, skin desquamation, and rib pain or fracture. Patient-reported cosmetic outcomes at 7 years were good or excellent for 92% and 96% of PBT and photon patients, respectively (P=.95). Overall patient satisfaction was 93% for the entire cohort. The 7-year local failure rate for all patients was 6%, with 3 local recurrences in the PBT group (7-year rate, 11%) and 2 in photon-treated patients (4%) (P=.22). Conclusions: Local failure rates of 3-dimensional APBI and PBT were similar in this study. However, PBT, as delivered in this study, led to higher rates of long-term telangiectasia, skin color changes, and skin toxicities. We recommend the use of multiple fields and treatment of all fields per treatment session or the use of scanning techniques to minimize skin toxicity.

62 RADIOLOGY AND NUCLEAR MEDICINE↗

Strain evolution in Zr-2.5 wt% Nb observed with synchrotron X-ray diffraction

Highlights: • The X-ray diffraction is useful for in-situ monitoring of lattice strain thermal changes in differently oriented grains. • 2D elastic strain evaluation performed for α-matrix and for δ-hydride. • A change in matrix strain considered as a sum of metal thermal expansion, effect of hydrogen, and inter-granular strain. • Differently oriented hydrides have different lattice parameter and start from different strain states. The mechanical behaviour of hydrides in Zr alloy at low hydrogen concentrations continues to be the subject of research due to wide engineering application and highly complex behaviour of the Zr-H system. Significant structural differences between hydrides and α-Zr cause large dilatational strains associated with formation of the hydride precipitates in zirconium. Two hydride populations were observed to form under different strain states in the α-Zr matrix. The hysteresis of the hydrogen solubility is detected both in intensity and in strain curves for measured δ(111), α(00.2) and α{10.0} peaks. A two-dimensional analysis of α-strain was performed for the axial-hoop, hoop-radial, and axial-radial planes of Zr-2.5 wt% Nb pressure tube material. Variations in the hydrostatic and deviatoric strain components of the α-Zr with temperature were examined. In addition, a change in phase strain during a thermal excursion was considered as a sum of three cooperating components: phase thermal expansion (ε{sub T}), strains associated with other phase presenting in material (ε{sub [H]} or ε{sub matrix}), and inter-granular strain within the phase caused by Type II stresses (ε{sub other}). The present study broadens our understanding of strain evolution in a Zr-H system undergoing hydride dissolution and precipitation. An X-ray synchrotron diffraction technique enables the in-situ following of strain variations in differently oriented grain families during the thermal cycle. In contrast to widely reported the average strain value within the α-phase, the diffraction patterns generated with this technique allow the evaluation of the anisotropic directionality of strains in different phases in Zr-H system generated during phase transformation.

36 MATERIALS SCIENCE↗

Growth modes of thin films of ligand-free metal clusters

Size-selected Mo{sub n}{sup −}, W{sub n}{sup −}, and Fe{sub n}{sup −} cluster anions are deposited on a weakly interacting substrate (highly oriented pyrolytic graphite) and studied ex-situ using atomic force microscopy. Depending on size, three growth modes can be distinguished. Very small clusters consisting of less than 10–30 atoms behave similar to atoms and coalesce into 3-dimensional bulk-like islands. Medium sized clusters consisting of hundreds of atoms do not coalesce and follow a Stanski-Krastanov growth pattern. At low coverage, an almost perfect monolayer is formed. This is a new finding different from all previous studies on deposited metal clusters. For clusters with several thousands of atoms, the growth pattern again changes. At low coverage, the substrate is dotted with individual clusters, while at high coverage, the surface becomes extremely rough.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗

Superconductivity in undoped BaFe 2 As 2 by tetrahedral geometry design

Fe-based superconductors exhibit a diverse interplay between charge, orbital, and magnetic ordering. Variations in atomic geometry affect electron hopping between Fe atoms and the Fermi surface topology, influencing magnetic frustration and the pairing strength through changes of orbital overlap and occupancies. Here, we experimentally demonstrate a systematic approach to realize superconductivity without chemical doping in BaFe 2 As 2 , employing geometric design within an epitaxial heterostructure. We control both tetragonality and orthorhombicity in BaFe 2 As 2 through superlattice engineering, which we experimentally find to induce superconductivity when the As−Fe−As bond angle approaches that in a regular tetrahedron. This approach to superlattice design could lead to insights into low-dimensional superconductivity in Fe-based superconductors.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗

Simulating bioclogging effects on dynamic riverbed permeability and infiltration

Bioclogging in rivers can detrimentally impact aquifer recharge. This is particularly so in dry regions, where losing rivers are common, and where disconnection between surface water and groundwater (leading to the development of an unsaturated zone) can occur. Reduction in riverbed permeability due to biomass growth is a time-variable parameter that is often neglected, yet permeability reduction from bioclogging can introduce order of magnitude changes in seepage fluxes from rivers over short (i.e., monthly) timescales. To address the combined effects of bioclogging and disconnection on infiltration, we developed in this paper numerical representations of bioclogging processes within a one-dimensional, variably saturated flow model representing losing-connected and losing-disconnected rivers. We tested these formulations using a synthetic case study informed with biological data obtained from the Russian River, California, USA. Our findings show that modeled biomass growth reduced seepage for losing-connected and losing-disconnected rivers. However, for rivers undergoing disconnection, infiltration declines occurred only after the system was fully disconnected. Before full disconnection, biologically induced permeability declines were not significant enough to offset the infiltration gains introduced by disconnection. The two effects combine to lead to a characteristic infiltration curve where peak infiltration magnitude and timing is controlled by permeability declines relative to hydraulic gradient gains. Biomass growth was found to hasten the onset of full disconnection; a condition we term ‘effective disconnection’. Finally, our results show that river infiltration can respond dynamically to bioclogging and subsequent permeability declines that are highly dependent on river connection status.

58 GEOSCIENCES↗

Integrated surface/subsurface permafrost thermal hydrology: Model formulation and proof-of-concept simulations

The need to understand potential climate impacts and feedbacks in Arctic regions has prompted recent interest in modeling of permafrost dynamics in a warming climate. A new fine-scale integrated surface/subsurface thermal hydrology modeling capability is described and demonstrated in proof-of-concept simulations. The new modeling capability combines a surface energy balance model with recently developed three-dimensional subsurface thermal hydrology models and new models for nonisothermal surface water flows and snow distribution in the microtopography. Surface water flows are modeled using the diffusion wave equation extended to include energy transport and phase change of ponded water. Variation of snow depth in the microtopography, physically the result of wind scour, is also modeled heuristically with a diffusion wave equation. The multiple surface and subsurface processes are implemented by leveraging highly parallel community software. Fully integrated thermal hydrology simulations on the tilted open book catchment, an important test case for integrated surface/subsurface flow modeling, are presented. Fine-scale 100-year projections of the integrated permafrost thermal hydrological system on an ice wedge polygon at Barrow Alaska in a warming climate are also presented. Finally, these simulations demonstrate the feasibility of microtopography-resolving, process-rich simulations as a tool to help understand possible future evolution of the carbon-rich Arctic tundra in a warming climate.

54 ENVIRONMENTAL SCIENCES↗

Cell Type-dependent Gene Transcription Profile in Three Dimensional Human Skin Tissue Model Exposed to Low Doses of Ionizing Radiation: Implications for Medical Exposures

The concern over possible health risks from exposures to low doses of ionizing radiation has been driven largely by the increase in medical exposures, the routine implementation of X-ray backscatter devices for airport security screening, and, most recently, the nuclear incident in Japan. Due to a paucity of direct epidemiological data at very low doses, cancer risk must be estimated from high dose exposure scenarios. However, there is increasing evidence that low and high dose exposures result in different signaling events and may have different mechanisms of cancer induction. We have examined the radiation induced temporal response of an in vitro three dimensional (3D) human skin tissue model using microarray-based transcriptional profiling. Our data shows that exposure to 100 mGy of X-rays is sufficient to affect gene transcription. Cell type specific analysis showed significant changes in gene expression with the levels of > 1400 genes altered in the dermis and > 400 genes regulated in the epidermis. The two cell types rarely exhibited overlapping responses at the mRNA level. Quantitative reverse transcription polymerase chain reaction (qRT-PCR) measurements validated the microarray data in both regulation direction and value. Key pathways identified relate to cell cycle regulation, immune responses, hypoxia, reactive oxygen signaling, and DNA damage repair. We discuss in particular the role of proliferation and emphasizing how the disregulation of cellular signaling in normal tissue may impact progression towards radiation induced secondary diseases.

59 BASIC BIOLOGICAL SCIENCES↗

Spatial and temporal dynamics of organohalide-respiring bacteria in a heterogeneous PCE–DNAPL source zone

Effective treatment of sites contaminated with dense non-aqueous phase liquids (DNAPLs) requires detailed understanding of the microbial community responses to changes in source zone strength and architecture. Changes in the spatial and temporal distributions of the organohalide-respiring Dehalococcoides mccartyi ( Dhc ) strains and Geobacter lovleyi strain SZ ( GeoSZ ) were examined in a heterogeneous tetrachloroethene- (PCE-) DNAPL source zone within a two-dimensional laboratory-scale aquifer flow cell. As part of a combined remedy approach, flushing with 2.3 pore volumes (PVs) of 4% (w/w) solution of the nonionic, biodegradable surfactant Tween® 80 removed 55% of the initial contaminant mass, and resulted in a PCE–DNAPL distribution that contained 51% discrete ganglia and 49% pools (ganglia-to-pool ratio of 1.06). Subsequent bioaugmentation with the PCE-to-ethene-dechlorinating consortium BDI-SZ resulted in cis -1,2-dichloroethene (cis-DCE) formation after 1 PV (ca. 7 days), while vinyl chloride (VC) and ethene were detected 10 PVs after bioaugmentation. Maximum ethene yields (ca. 90 μM) within DNAPL pool and ganglia regions coincided with the detection of the vcrA reductive dehalogenase (RDase) gene that exceeded the Dhc 16S rRNA genes by 2.0 ± 1.3 and 4.0 ± 1.7 fold in the pool and ganglia regions, respectively. Dhc and GeoSZ cell abundance increased by up to 4 orders-of-magnitude after 28 PVs of steady-state operation, with 1 to 2 orders-of-magnitude increases observed in close proximity to residual PCE–DNAPL. These observations suggest the involvement of these dechlorinators the in observed PCE dissolution enhancements of up to 2.3 and 6.0-fold within pool and ganglia regions, respectively. Analysis of the solid and aqueous samples at the conclusion of the experiment revealed that the highest VC (≥ 155 μM) and ethene (≥ 65 μM) concentrations were measured in zones where Dhc and GeoSZ were predominately attached to the solids. In conclusion, these findings demonstrate dynamic responses of organohalide-respiring bacteria in a heterogeneous DNAPL source zone, and emphasize the influence of source zone architecture on bioremediation performance.

54 ENVIRONMENTAL SCIENCES↗

A modified thermodynamic sea ice model and its application

This paper presents a modified thermodynamic sea ice model based on the Winton’s three-layer model framework. Several improvements focused on the vertical thermodynamics have been made in the model. Results from a series of one-dimensional experiments show that equilibrium ice thickness in our modified model is increased by about 45 cm when compared with the original Winton’s model. Sensitivity tests indicate that all modifications mentioned above contribute to this change of ice thickness, among which the increase of ice layer has the most significant effect followed by the sea ice conductivity parameterization. The modified thermodynamic sea ice model is then coupled into the sea ice component SIS in GFDL MOM4 to exert long-term integration experiments forced by CORE2.0 data. Results indicate that the modified model shows significant improvement in simulating the Arctic sea ice, including an increase in both the sea ice thickness and volume over the whole Arctic region. This confirms the above founding from 1-D simulations.

54 ENVIRONMENTAL SCIENCES↗

3D-cultured neural stem cell microarrays on a micropillar chip for high-throughput developmental neurotoxicology

Highlights: • Optimum cell viability and spheroid formation observed in 3D cultured NSC microarrays. • Lentiviruses constructed for measuring the expression levels of NSC biomarkers. • Differentiation of ReNcell VM assessed after growth factor removal and with additives. • High-throughput assessment of self-renewal and differentiation demonstrated in 3D cell culture. Numerous chemicals including environmental toxicants and drugs have not been fully evaluated for developmental neurotoxicity. A key gap exists in the ability to predict accurately and robustly in vivo outcomes based on in vitro assays. This is particularly the case for predicting the toxicity of chemicals on the developing human brain. A critical need for such in vitro assays is choice of a suitable model cell type. To that end, we have performed high-throughput in vitro assessment of proliferation and differentiation of human neural stem cells (hNSCs). Conventional in vitro assays typically use immunofluorescence staining to quantify changes in cell morphology and expression of neural cell-specific biomarkers, which is often time-consuming and subject to variable specificities of available antibodies. To alleviate these limitations, we developed a miniaturized, three-dimensional (3D) hNSC culture with ReNcell VM on microarray chip platforms and established a high-throughput promoter-reporter assay system using recombinant lentiviruses on hNSC spheroids to assess cell viability, self-renewal, and differentiation. Optimum cell viability and spheroid formation of 3D ReNcell VM culture were observed on a micropillar chip over a period of 9 days in a mixture of 0.75% (w/v) alginate and 1 mg/mL growth factor reduced (GFR) Matrigel with 25 mM CaCl{sub 2} as a crosslinker for alginate. In addition, 3D ReNcell VM culture exhibited self-renewal and differentiation on the microarray chip platform, which was efficiently monitored by enhanced green fluorescent protein (EGFP) expression of four NSC-specific biomarkers including sex determining region Y-box 2 (SOX2), glial fibrillary acidic protein (GFAP), synapsin1, and myelin basic protein (MBP) with the promoter-reporter assay system.

60 APPLIED LIFE SCIENCES↗

Illumination of Damage in Intact Rocks by Ultrasonic Transmission-Reflection and Digital Image Correlation

aboratory-scale experiments on intact rocks are critical to the development of physics-based fundamental understanding of various geophysical phenomena. In this work, the capability of ultrasonic wave transmission (T-mode) and reflection (R-mode) to monitor damage progression in uniaxially loaded prismatic intact rock specimens has been analyzed, as it is imperative to study the observations and document the capabilities of these techniques in a controlled environment. This study is novel in the sense that the R-mode linear ultrasonic testing (LUT) has been rarely employed in studying intact rock damage processes in a laboratory setting, with most of the studies utilizing a direct transmission (T-mode) approach or focusing on macroscopically fractured material. The two-dimensional digital image correlation (2-D DIC) full-field strain measurement approach was also used in-sync with the LUT monitoring to explicitly correlate the stress-induced damage in the specimens with the changes observed in the ultrasonic (T-mode and R-mode) signals. The results show that both the T-mode and R-mode LUT approaches are sensitive to detect the evolution of tensile and shear damage in the specimens, with the R-mode ultrasonic signals showing higher degree of sensitivity to the damage in the rocks, immediately following the initiation of damage in the rock volume.

58 GEOSCIENCES↗

Dual quantum spin Hall insulator by density-tuned correlations in TaIrTe 4

The convergence of topology and correlations represents a highly coveted realm in the pursuit of new quantum states of matter. Introducing electron correlations to a quantum spin Hall (QSH) insulator can lead to the emergence of a fractional topological insulator and other exotic time-reversal-symmetric topological order, not possible in quantum Hall and Chern insulator systems. Here, in this study, we report a new dual QSH insulator within the intrinsic monolayer crystal of TaIrTe 4 , arising from the interplay of its single-particle topology and density-tuned electron correlations. At charge neutrality, monolayer TaIrTe 4 demonstrates the QSH insulator, manifesting enhanced nonlocal transport and quantized helical edge conductance. After introducing electrons from charge neutrality, TaIrTe 4 shows metallic behaviour in only a small range of charge densities but quickly goes into a new insulating state, entirely unexpected on the basis of the single-particle band structure of TaIrTe 4 . This insulating state could arise from a strong electronic instability near the van Hove singularities, probably leading to a charge density wave (CDW). Remarkably, within this correlated insulating gap, we observe a resurgence of the QSH state. The observation of helical edge conduction in a CDW gap could bridge spin physics and charge orders. The discovery of a dual QSH insulator introduces a new method for creating topological flat minibands through CDW superlattices, which offer a promising platform for exploring time-reversal-symmetric fractional phases and electromagnetism.

electronic devices↗

One-dimensional plasma photonic crystals with sinusoidal densities

Properties of electromagnetic waves with normal and oblique incidence have been studied for one-dimensional plasma layers with sinusoidal densities. Wave transmittance as a function of wave frequency exhibits photonic band gaps characteristic of photonic crystals. For periodic structures, increasing collision frequency is demonstrated to lead to greater absorption, increasing the modulation factor enlarges the gap width, and increasing incidence angle can change the gap locations of the two polarizations. If a defect layer is introduced by inserting a new plasma layer in the center, a defect mode may appear within the gap. Periodic number, collision frequency, and modulation factor can affect magnitude of the defect mode. The incidence angle enables the frequency to be tuned. Defect layer thickness affects both frequency and number of defect modes. These results may provide theoretical guidance in designing tunable narrow-band filters.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

Critical point anomalies include expansion shock waves

From first-principle fluid dynamics, complemented by a rigorous state equation accounting for critical anomalies, we discovered that expansion shock waves may occur in the vicinity of the liquid-vapor critical point in the two-phase region. Due to universality of near-critical thermodynamics, the result is valid for any common pure fluid in which molecular interactions are only short-range, namely, for so-called 3-dimensional Ising-like systems, and under the assumption of thermodynamic equilibrium. In addition to rarefaction shock waves, diverse non-classical effects are admissible, including composite compressive shock-fan-shock waves, due to the change of sign of the fundamental derivative of gasdynamics.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

A tomographic particle image velocimetry investigation of the flow development over dual step cylinders

This experimental study focuses on the near wake development of a dual step cylinder geometry consisting of a long base cylinder of diameter d to which a larger diameter (D) cylinder of length L is attached coaxially at mid-span. The experiments cover a range of Reynolds numbers, 2000 ≤ Re{sub D} ≤ 5000, diameter ratios, 1.33 ≤ D/d ≤ 2.0 and large cylinder aspect ratios, 0.5 ≤ L/D ≤ 5 using Tomographic particle image velocimetry. Distinct changes in wake topology are observed varying the above parameters. Supporting previous experimental studies on the same geometry involving flow visualization and planar measurements, four distinct flow regimes are identified to which a distinct three-dimensional wake topology can be associated. The vortex-dominated wake dynamical behaviour is investigated with Proper Orthogonal Decomposition (POD) and conditional averaging of three-dimensional velocity fields is used to exemplify the different shedding regimes. The conditionally averaged flow fields are shown to quantitatively resolve flow features equivalent to those obtained from a reduced order model consisting of the first ten to twenty POD modes, identifying the dominant vortex shedding cells and their interactions.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

ESTIMATING THE ARRIVAL TIME OF EARTH-DIRECTED CORONAL MASS EJECTIONS AT IN SITU SPACECRAFT USING COR AND HI OBSERVATIONS FROM STEREO

Predicting the arrival time and transit speed of coronal mass ejections (CMEs) near the Earth is critical to understanding the solar-terrestrial relationship. Even though STEREO observations now provide multiple views of CMEs in the heliosphere, the true speeds derived from stereoscopic reconstruction of SECCHI coronagraph data are not quite sufficient for accurate forecasting of the arrival time at Earth of a majority of CMEs. This uncertainty is due to many factors that change CME kinematics, such as the interaction of two or more CMEs or the interaction of CMEs with the pervading solar wind. In order to understand the propagation of CMEs, we have used the three-dimensional triangulation method on SECCHI coronagraph (COR2) images and geometric triangulation on the J-maps constructed from Heliospheric Imagers HI1 and HI2 data for eight Earth-directed CMEs observed during 2008-2010. Based on the reconstruction, and implementing the drag-based model for the distance where the CMEs could not be tracked unambiguously in the interplanetary (IP) medium, the arrival time of these CMEs have been estimated. These arrival times have also been compared with the actual arrival times as observed by in situ instruments. The analysis reveals the importance of heliospheric imaging for improved forecasting of the arrival time and direction of propagation of CMEs in the IP medium.

79 ASTRONOMY AND ASTROPHYSICS↗

Effects of multiple-scale driving on turbulence statistics

Turbulence is ubiquitous in astrophysical fluids such as the interstellar medium and the intracluster medium. In turbulence studies, it is customary to assume that fluid is driven on a single scale. However, in astrophysical fluids, there can be many different driving mechanisms that act on different scales. If there are multiple energy-injection scales, the process of energy cascade and turbulence dynamo will be different compared with the case of the single energy-injection scale. In this work, we perform three-dimensional incompressible/compressible magnetohydrodynamic turbulence simulations. We drive turbulence in Fourier space in two wavenumber ranges, 2≤k≤√12 (large scale) and 15 ≲ k ≲ 26 (small scale). We inject different amount of energy in each range by changing the amplitude of forcing in the range. We present the time evolution of the kinetic and magnetic energy densities and discuss the turbulence dynamo in the presence of energy injections at two scales. We show how kinetic, magnetic, and density spectra are affected by the two-scale energy injections and we discuss the observational implications. In the case ε {sub L} < ε {sub S}, where ε {sub L} and ε {sub S} are energy-injection rates at the large and small scales, respectively, our results show that even a tiny amount of large-scale energy injection can significantly change the properties of turbulence. On the other hand, when ε {sub L} ≳ ε {sub S}, the small-scale driving does not influence the turbulence statistics much unless ε {sub L} ∼ ε {sub S}.

79 ASTRONOMY AND ASTROPHYSICS↗