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At least 1,495 records · Page 83

Non-unimodal and non-concave relationships in the network Macroscopic Fundamental Diagram caused by hierarchical streets

Unimodal, concave relationships between average network productivity and accumulation or density aggregated across spatially compact regions of urban networks—so called network Macroscopic Fundamental Diagrams (MFDs)—have recently been shown to exist on homogeneous street networks. When present, MFD relationships facilitate the modeling of traffic congestion at a regional level and have led to the development of various regional traffic control strategies. However, real street networks are not homogeneous—they generally have a hierarchical structure where some streets (e.g., arterials) promote higher mobility than others (e.g., local roads). Here, this paper examines how the presence of hierarchical roadway structures may potentially cause non-unimodal patterns in a network's MFD. These are observed using three types of tools: analytical models of simple network structures, simulations of various idealized roadway networks, and empirical data. The impacts of street hierarchy depend on how vehicles use different roadway types to move within the network; i.e., their routing strategy. The findings suggest that the presence of roadway hierarchies may lead to MFDs that have non-unimodal or non-concave patterns on the free-flow branch when vehicles route themselves according to user equilibrium principles, which is closest to what would be observed in realistic situations. Such patterns are contrary to what is traditionally assumed in most MFD-based modeling frameworks. However, the unimodal and concave MFD should be expected under system optimal routing conditions that maximize network productivity for a given traffic state.

42 ENGINEERING↗

Automated selection of the optimal cardiac phase for single-beat coronary CT angiography reconstruction

Purpose: Reconstructing a low-motion cardiac phase is expected to improve coronary artery visualization in coronary computed tomography angiography (CCTA) exams. This study developed an automated algorithm for selecting the optimal cardiac phase for CCTA reconstruction. The algorithm uses prospectively gated, single-beat, multiphase data made possible by wide cone-beam imaging. The proposed algorithm differs from previous approaches because the optimal phase is identified based on vessel image quality (IQ) directly, compared to previous approaches that included motion estimation and interphase processing. Because there is no processing of interphase information, the algorithm can be applied to any sampling of image phases, making it suited for prospectively gated studies where only a subset of phases are available. Methods: An automated algorithm was developed to select the optimal phase based on quantitative IQ metrics. For each reconstructed slice at each reconstructed phase, an image quality metric was calculated based on measures of circularity and edge strength of through-plane vessels. The image quality metric was aggregated across slices, while a metric of vessel-location consistency was used to ignore slices that did not contain through-plane vessels. The algorithm performance was evaluated using two observer studies. Fourteen single-beat cardiac CT exams (Revolution CT, GE Healthcare, Chalfont St. Giles, UK) reconstructed at 2% intervals were evaluated for best systolic (1), diastolic (6), or systolic and diastolic phases (7) by three readers and the algorithm. Pairwise inter-reader and reader-algorithm agreement was evaluated using the mean absolute difference (MAD) and concordance correlation coefficient (CCC) between the reader and algorithm-selected phases. A reader-consensus best phase was determined and compared to the algorithm selected phase. In cases where the algorithm and consensus best phases differed by more than 2%, IQ was scored by three readers using a five point Likert scale. Results: There was no statistically significant difference between inter-reader and reader-algorithm agreement for either MAD or CCC metrics (p > 0.1). The algorithm phase was within 2% of the consensus phase in 15/21 of cases. The average absolute difference between consensus and algorithm best phases was 2.29% ± 2.47%, with a maximum difference of 8%. Average image quality scores for the algorithm chosen best phase were 4.01 ± 0.65 overall, 3.33 ± 1.27 for right coronary artery (RCA), 4.50 ± 0.35 for left anterior descending (LAD) artery, and 4.50 ± 0.35 for left circumflex artery (LCX). Average image quality scores for the consensus best phase were 4.11 ± 0.54 overall, 3.44 ± 1.03 for RCA, 4.39 ± 0.39 for LAD, and 4.50 ± 0.18 for LCX. There was no statistically significant difference (p > 0.1) between the image quality scores of the algorithm phase and the consensus phase. Conclusions: The proposed algorithm was statistically equivalent to a reader in selecting an optimal cardiac phase for CCTA exams. When reader and algorithm phases differed by >2%, image quality as rated by blinded readers was statistically equivalent. By detecting the optimal phase for CCTA reconstruction, the proposed algorithm is expected to improve coronary artery visualization in CCTA exams.

61 RADIATION PROTECTION AND DOSIMETRY↗

Life cycle assessment of construction and demolition waste management

Highlights: • LCA of C&DW utilisation in road vs. C&DW landfilling. • C&DW utilisation in road better than landfilling for most categories. • Transportation is the most important process in non-toxic impact categories. • Leaching of oxyanions is the critical process in toxic impact categories. • Modelling of Cr fate in the subsoil is highly influential to the results. - Abstract: Life cycle assessment (LCA) modelling of construction and demolition waste (C&DW) management was carried out. The functional unit was management of 1 Mg mineral, source separated C&DW, which is either utilised in road construction as a substitute for natural aggregates, or landfilled. The assessed environmental impacts included both non-toxic and toxic impact categories. The scenarios comprised all stages of the end-of-life management of C&DW, until final disposal of all residues. Leaching of inorganic contaminants was included, as was the production of natural aggregates, which was avoided because of the use of C&DW. Typical uncertainties related to contaminant leaching were addressed. For most impact categories, utilisation of C&DW in road construction was preferable to landfilling; however, for most categories, utilisation resulted in net environmental burdens. Transportation represented the most important contribution for most nontoxic impacts, accounting for 60–95 per cent of these impacts. Capital goods contributed with negligible impacts. Leaching played a critical role for the toxic categories, where landfilling had lower impacts than utilisation because of the lower levels of leachate per ton of C&DW reaching the groundwater over a 100-year perspective. Leaching of oxyanions (As, V and Sb) was critical with respect to leaching. Typical experimental uncertainties in leaching data did not have a pivotal influence on the results; however, accounting for Cr immobilisation in soils as part of the impact assessment was critical for modelling the leaching impacts. Compared with the overall life cycle of building and construction materials, leaching emissions were shown to be potentially significant for toxicity impacts, compared with contributions from production of the same materials, showing that end-of-life impacts and leaching should not be disregarded when assessing environmental impacts from construction products and materials. CO{sub 2} uptake in the C&DW corresponding to 15 per cent carbonation could out-balance global warming impacts from transportation; however, carbonation would also likely result in increased toxicity impacts due to higher leaching of oxyanions.

12 MANAGEMENT OF RADIOACTIVE AND NON-RADIOACTIVE W↗

Lattice model for amyloid peptides: OPEP force field parametrization and applications to the nucleus size of Alzheimer’s peptides

Coarse-grained protein lattice models approximate atomistic details and keep the essential interactions. They are, therefore, suitable for capturing generic features of protein folding and amyloid formation at low computational cost. As our aim is to study the critical nucleus sizes of two experimentally well-characterized peptide fragments Aβ{sub 16−22} and Aβ{sub 37−42} of the full length Aβ{sub 1−42} Alzheimer’s peptide, it is important that simulations with the lattice model reproduce all-atom simulations. In this study, we present a comprehensive force field parameterization based on the OPEP (Optimized Potential for Efficient protein structure Prediction) force field for an on-lattice protein model, which incorporates explicitly the formation of hydrogen bonds and directions of side-chains. Our bottom-up approach starts with the determination of the best lattice force parameters for the Aβ{sub 16−22} dimer by fitting its equilibrium parallel and anti-parallel β-sheet populations to all-atom simulation results. Surprisingly, the calibrated force field is transferable to the trimer of Aβ{sub 16−22} and the dimer and trimer of Aβ{sub 37−42}. Encouraged by this finding, we characterized the free energy landscapes of the two decamers. The dominant structure of the Aβ{sub 16−22} decamer matches the microcrystal structure. Pushing the simulations for aggregates between 4-mer and 12-mer suggests a nucleus size for fibril formation of 10 chains. In contrast, the Aβ{sub 37−42} decamer is largely disordered with mixed by parallel and antiparallel chains, suggesting that the nucleus size is >10 peptides. Our refined force field coupled to this on-lattice model should provide useful insights into the critical nucleation number associated with neurodegenerative diseases.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Optimization of spray breakup model parameters for predicting fuel spray and film characteristics in gasoline direct injection engines

This study investigated the behavior of gasoline direct injection (GDI) sprays using computational fluid dynamics (CFD). The authors developed an approach to identify optimal spray breakup model parameters by evaluating an error function across numerous simulations, with the goal of minimizing discrepancies from experimental data. Using the optimal setup, the simulated spray matched well with projected liquid volume distributions, liquid penetration, and spray width measured in a constant-pressure continuous-flow chamber. To further validate the approach, the same setup was tested across various fuels, injectors, and operating conditions. Subsequently, the optimal setup, along with a recently developed spray-wall interaction model, were applied to a direct-injection spark-ignited engine under late-injection conditions to predict and evaluate fuel film formation and evolution at varying engine coolant temperatures. Here, with the centrally mounted injector directing the spray toward the piston, simulations indicated that the spray tends to impinge on the piston surface. The proposed simulation framework also accurately captured the aggregate film area on the piston surface, aligning with previously published experimental results. Moreover, simulations showed that increasing the coolant temperature from cold start conditions (333 K) to warm conditions (363 K) reduced the fuel mass deposited on the piston by roughly 50%. Furthermore, for the spray-guided engine configuration studied in this work, the CFD model predicted minimal film deposition on the spark plug electrodes regardless of the coolant temperatures due to a relatively weak in-cylinder flow during the compression phase.

Computational fluid dynamics (CFD)↗

Network-Aware and Welfare-Maximizing Dynamic Pricing for Energy Sharing: Preprint

The proliferation of behind-the-meter (BTM) distributed energy resources (DER) within the electrical distribution network presents significant supply and demand flexibilities, but also introduces operational challenges such as voltage spikes and reverse power flows. In response, this paper proposes a network-aware dynamic pricing framework tailored for energy-sharing coalitions that aggregate small, but ubiquitous, BTM DER downstream of a distribution system operator's (DSO) revenue meter that adopts a generic net energy metering (NEM) tariff. By formulating a Stackelberg game between the energy-sharing market leader and its prosumers, we show that the dynamic pricing policy induces the prosumers toward a network-safe operation and decentrally maximizes the energysharing social welfare. The dynamic pricing mechanism involves a combination of a locational ex-ante dynamic price and an ex-post allocation, both of which are functions of the energy sharing's BTM DER. The ex-post allocation is proportionate to the price differential between the DSO NEM price and the energy sharing locational price. Simulation results using real DER data and the IEEE 13-bus test systems illustrate the dynamic nature of network-aware pricing at each bus, and its impact on voltage.

energy communities↗

The Fifth International Workshop on Ice Nucleation phase 2 (FIN-02): laboratory intercomparison of ice nucleation measurements

Abstract. The second phase of the Fifth International Ice Nucleation Workshop (FIN-02)involved the gathering of a large number of researchers at the KarlsruheInstitute of Technology's Aerosol Interactions and Dynamics of the Atmosphere(AIDA) facility to promote characterization and understanding of icenucleation measurements made by a variety of methods used worldwide.Compared to the previous workshop in 2007, participation was doubled,reflecting a vibrant research area. Experimental methods involved sampling ofaerosol particles by direct processing ice nucleation measuring systems fromthe same volume of air in separate experiments using different ice nucleatingparticle (INP) types, and collections of aerosol particle samples ontofilters or into liquid for sharing amongst measurement techniques thatpost-process these samples. In this manner, any errors introduced bydifferences in generation methods when samples are shared across laboratorieswere mitigated. Furthermore, as much as possible, aerosol particle sizedistribution was controlled so that the size limitations of different methodswere minimized. The results presented here use data from the workshop toassess the comparability of immersion freezing measurement methods activatingINPs in bulk suspensions, methods that activate INPs in condensation and/orimmersion freezing modes as single particles on a substrate, continuous flowdiffusion chambers (CFDCs) directly sampling and processing particles wellabove water saturation to maximize immersion and subsequent freezing ofaerosol particles, and expansion cloud chamber simulations in which liquidcloud droplets were first activated on aerosol particles prior to freezing.The AIDA expansion chamber measurements are expected to be the closestrepresentation to INP activation in atmospheric cloud parcels in thesecomparisons, due to exposing particles freely to adiabatic cooling. The different particle types used as INPs included the minerals illite NX andpotassium feldspar (K-feldspar), two natural soil dusts representative of arable sandy loam(Argentina) and highly erodible sandy dryland (Tunisia) soils, respectively,and a bacterial INP (Snomax ® ). Consideredtogether, the agreement among post-processed immersion freezing measurementsof the numbers and fractions of particles active at different temperaturesfollowing bulk collection of particles into liquid was excellent, withpossible temperature uncertainties inferred to be a key factor in determiningINP uncertainties. Collection onto filters for rinsing versus directly intoliquid in impingers made little difference. For methods that activatedcollected single particles on a substrate at a controlled humidity at orabove water saturation, agreement with immersion freezing methods was good inmost cases, but was biased low in a few others for reasons that have not beenresolved, but could relate to water vapor competition effects. AmongstCFDC-style instruments, various factors requiring (variable) highersupersaturations to achieve equivalent immersion freezing activation dominatethe uncertainty between these measurements, and for comparison with bulkimmersion freezing methods. When operated above water saturation to includeassessment of immersion freezing, CFDC measurements often measured at orabove the upper bound of immersion freezing device measurements, but oftenunderestimated INP concentration in comparison to an immersion freezingmethod that first activates all particles into liquid droplets prior tocooling (the PIMCA-PINC device, or Portable Immersion Mode Cooling chAmber–Portable Ice Nucleation Chamber), and typically slightly underestimated INPnumber concentrations in comparison to cloud parcel expansions in the AIDAchamber; this can be largely mitigated when it is possible to raise therelative humidity to sufficiently high values in the CFDCs, although this isnot always possible operationally. Correspondence of measurements of INPs among direct sampling andpost-processing systems varied depending on the INP type. Agreement was bestfor Snomax ® particles in the temperature regimecolder than −10 ∘ C, where their ice nucleation activity is nearlymaximized and changes very little with temperature. At temperatures warmer than −10 ∘ C, Snomax ® INP measurements (allvia freezing of suspensions) demonstrated discrepancies consistent withprevious reports of the instability of its protein aggregates that appear tomake it less suitable as a calibration INP at these temperatures. ForArgentinian soil dust particles, there was excellent agreement across allmeasurement methods; measures ranged within 1 order of magnitude for INPnumber concentrations, active fractions and calculated active site densitiesover a 25 to 30 ∘ C range and 5 to 8 orders of correspondingmagnitude change in number concentrations. This was also the case for alltemperatures warmer than −25 ∘ C in Tunisian dust experiments. Incontrast, discrepancies in measurements of INP concentrations or active sitedensities that exceeded 2 orders of magnitude across a broad range of temperaturemeasurements found at temperatures warmer than −25 ∘ C in a previous study werereplicated for illite NX. Discrepancies also exceeded 2 orders of magnitude attemperatures of −20 to −25 ∘ C for potassium feldspar (K-feldspar), but these coincidedwith the range of temperatures at which INP concentrations increase rapidly atapproximately an order of magnitude per 2 ∘ C cooling forK-feldspar. These few discrepancies did not outweigh the overall positive outcomes of theworkshop activity, nor the future utility of this data set or future similarefforts for resolving remaining measurement issues. Measurements of the samematerials were repeatable over the time of the workshop and demonstratedstrong consistency with prior studies, as reflected by agreement of databroadly with parameterizations of different specific or general (e.g., soildust) aerosol types. The divergent measurements of the INP activity of illiteNX by direct versus post-processing methods were not repeated for otherparticle types, and the Snomax ® datademonstrated that, at least for a biological INP type, there is no expectedmeasurement bias between bulk collection and direct immediately processedfreezing methods to as warm as −10 ∘ C. Since particle size rangeswere limited for this workshop, it can be expected that for atmosphericpopulations of INPs, measurement discrepancies will appear due to thedifferent capabilities of methods for sampling the full aerosol sizedistribution, or due to limitations on achieving sufficient watersupersaturations to fully capture immersion freezing in direct processinginstruments. Overall, this workshop presents an improved picture of presentcapabilities for measuring INPs than in past workshops, and providesdirection toward addressing remaining measurement issues.

54 ENVIRONMENTAL SCIENCES↗

Compound-Nucleus and Doorway-State Decays of β -Delayed Neutron Emitters K 51 , 52 , 53

We investigated decays of K 51 , 52 , 53 at the ISOLDE Decay Station at CERN in order to understand the mechanism of the β -delayed neutron-emission ( β n ) process. The experiment quantified neutron and γ -ray emission paths for each precursor. We used this information to test the hypothesis, first formulated by Bohr in 1939, that neutrons in the β n process originate from the structureless “compound nucleus.” The data are consistent with this postulate for most of the observed decay paths. The agreement, however, is surprising because the compound-nucleus stage should not be achieved in the studied β decay due to insufficient excitation energy and level densities in the neutron emitter. In the K 53 β n decay, we found a preferential population of the first excited state in Ca 52 that contradicted Bohr’s hypothesis. The latter was interpreted as evidence for direct neutron emission sensitive to the structure of the neutron-unbound state. We propose that the observed nonstatistical neutron emission proceeds through the coupling with nearby doorway states that have large neutron-emission probabilities. The appearance of “compound-nucleus” decay is caused by the aggregated small contributions of multiple doorway states at higher excitation energy. Published by the American Physical Society 2024

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Data from: Land-based climate solutions for the United States

Meeting end-of-century global warming targets requires aggressive action on multiple fronts. Recent reports note the futility of addressing mitigation goals without fully engaging the agricultural sector, yet no available assessments combine both nature-based solutions (reforestation, grassland and wetland protection, and agricultural practice change) and cellulosic bioenergy for a single geographic region. Collectively, these solutions might offer a suite of climate, biodiversity, and other benefits greater than either alone. Nature-based solutions are largely constrained by the duration of carbon accrual in soils and forest biomass; each of these carbon pools will eventually saturate. Bioenergy solutions can last indefinitely but carry significant environmental risk if carelessly deployed. We detail a simplified scenario for the U.S. that illustrates the benefits of combining approaches. We assign a portion of non-forested former cropland to bioenergy sufficient to meet projected mid-century transportation needs, with the remainder assigned to nature-based solutions such as reforestation. Bottom-up mitigation potentials for the aggregate contributions of crop, grazing, forest, and bioenergy lands are assessed by including in a Monte Carlo model conservative ranges for cost-effective local mitigation capacities, together with ranges for (a) areal extents that avoid double counting and include realistic adoption rates and (b) the projected duration of different carbon sinks. The projected duration illustrates the net effect of eventually saturating soil carbon pools in the case of most strategies, and additionally saturating biomass carbon pools in the case of reforestation. Results show a conservative end-of-century mitigation capacity of 110 (57 – 178) Gt CO2e for the U.S., ~50% higher than existing estimates that prioritize nature-based or bioenergy solutions separately. Further research is needed to shrink uncertainties but there is sufficient confidence in the general magnitude and direction of a combined approach to plan for deployment now.

09 BIOMASS FUELS↗

Mesoscopic Modeling and Rapid Simulation of Incremental Changes in Epidemic Scenarios on GPUs

In simulation-based studies and analyses of epidemics, a major challenge lies in resolving the conflict between fidelity of models and the speed of their simulation. Another related challenge arises in dealing with the large number of what–if scenarios that need to be explored. Here, we describe new computational methods that together provide an approach to dealing with both challenges. A mesoscopic modeling approach is described that strikes a middle ground between macroscopic models based on coupled differential equations and microscopic models built on fine-grained behaviors at the individual entity level. The mesoscopic approach offers the ability to incorporate complex compositions of multiple layers of dynamics even while retaining the potential for aggregate behaviors at varying levels. It also is an excellent match to the accelerator-based architectures of modern computing platforms in which graphical processing units (GPUs) can be exploited for fast simulation via the parallel execution mode of single instruction multiple thread (SIMT). The challenge of simulating a large number of scenarios is addressed via a method of sharing model state and computation across a tree of what–if scenarios that are localized, incremental changes to a large base simulation. A combination of the mesoscopic modeling approach and the incremental what–if scenario tree evaluation has been implemented in the software on modern GPUs. Synthetic simulation scenarios are presented to demonstrate the computational characteristics of our approach. Results from the experiments with large population data, including USA, UK, and India, illustrate the modeling methodology and computational performance on thousands of synthetically generated what–if scenarios. Execution of our implementation scaled to 8192 GPUs of supercomputing platforms demonstrates the ability to rapidly evaluate what–if scenarios several orders of magnitude faster than the conventional methods.

97 MATHEMATICS AND COMPUTING↗

Sensor cost-effectiveness analysis for data-driven fault detection and diagnostics in commercial buildings

Data-driven building fault detection and diagnostics (FDD) is heavily dependent on sensors. However, common sensors from Building Automation Systems are not optimized to maximize accuracy in FDD. Installing additional sensors that provide more detailed building system information is key to maximizing the performance of FDD solutions. Here in this paper, we present a sensor cost analysis workflow to quantify the economic implications of installing new sensors for FDD using the concept of sensor threshold marginal cost (STMC). STMC does not represent actual sensor cost. Rather, it represents a target cost based on the economic benefit that would be realized through improved FDD performance and one or more specified economic criteria. We calculate STMCs for multiple possible fault types and use fault prevalence information to aggregate STMCs into a single dollar value to determine the cost-effectiveness of a potential sensor investment. We conducted a case study using Oak Ridge National Laboratory's Flexible Research Platform (FRP) test facility as a reference. The case study demonstrates the feasibility of the analysis and highlights the key cost considerations in sensor selection for FDD. The results also indicate that identifying and installing the few key sensor(s) is critical to cost-effectively improve FDD performance.

32 ENERGY CONSERVATION, CONSUMPTION, AND UTILIZATI↗

The NEON Daily Isotopic Composition of Environmental Exchanges Dataset

The National Ecological Observatory Network (NEON) provides open-access measurements of stable isotope ratios in atmospheric water vapor (δ 2 H, δ 18 O) and carbon dioxide (δ 13 C) at different tower heights, as well as aggregated biweekly precipitation samples (δ 2 H, δ 18 O) across the United States. These measurements were used to create the NEON Daily Isotopic Composition of Environmental Exchanges (NEON-DICEE) dataset estimating precipitation (P; δ 2 H, δ 18 O), evapotranspiration (ET; δ 2 H, δ 18 O), and net ecosystem exchange (NEE; δ 13 C) isotope ratios. Statistically downscaled precipitation datasets were generated to be consistent with the estimated covariance between isotope ratios and precipitation amounts at daily time scales. Isotope ratios in ET and NEE fluxes were estimated using a mixing-model approach with calibrated NEON tower measurements. NEON-DICEE is publicly available on HydroShare and can be reproduced or modified to fit user specific applications or include additional NEON data records as they become available. The NEON-DICEE dataset can facilitate understanding of terrestrial ecosystem processes through their incorporation into environmental investigations that require daily δ 2 H, δ 18 O, and δ 13 C flux data.

54 ENVIRONMENTAL SCIENCES↗

PyPop: a mature open-source software pipeline for population genomics

Python for Population Genomics (PyPop) is a software package that processes genotype and allele data and performs large-scale population genetic analyses on highly polymorphic multi-locus genotype data. In particular, PyPop tests data conformity to Hardy-Weinberg equilibrium expectations, performs Ewens-Watterson tests for selection, estimates haplotype frequencies, measures linkage disequilibrium, and tests significance. Standardized means of performing these tests is key for contemporary studies of evolutionary biology and population genetics, and these tests are central to genetic studies of disease association as well. Here, we present PyPop 1.0.0, a new major release of the package, which implements new features using the more robust infrastructure of GitHub, and is distributed via the industry-standard Python Package Index. New features include implementation of the asymmetric linkage disequilibrium measures and, of particular interest to the immunogenetics research communities, support for modern nomenclature, including colon-delimited allele names, and improvements to meta-analysis features for aggregating outputs for multiple populations.

59 BASIC BIOLOGICAL SCIENCES↗

Regional Medium-Term Hourly Electricity Demand Forecasting Based on LSTM

This paper aims to forecast high-resolution (hourly) aggregated load for a certain region in the medium term (a few days to over a year). One region is defined as some places with similar climate characteristics because the climate influences people's daily lifestyles and hence the electric usage. We decom- pose the electric usage records into two parts: base load and seasonal load. Considering both temperature and time factors, different deep learning methods are adopted to characterize them. The first goal of our approach is to predict the peak load which is critical for power system planning. Furthermore, our proposed forecast method can provide the depiction of the hourly load profile to provide customized load curves for high- level real-time applications. The proposed method is tested on real-world historical data collected by CAISO, BPA, and PACW. The experimental results show that trained by three years of data, our method could reduce the prediction error for one-year lead hourly load below 5% MAPE, and predict the occurrence of the peak load for next year in CAISO with an error within three days. Furthermore, as a byproduct, an interesting observation on the impact of COVID-19 on human life was made and discussed based on these case studies.

deep learning↗

Game-Theoretic Strategies for Cyber-Physical Infrastructures Under Component Disruptions

In this work, networked infrastructures of recursively defined systems composed of discrete cyber and physical components are considered. The components of basic systems at the finest levels can be disrupted by cyber or physical means, and can be reinforced to survive at certain costs. A problem of ensuring the infrastructure performance is formulated as a game between a provider and an attacker, who probabilistically choose components to reinforce and attack, respectively. The disruptions of this infrastructure are characterized using the aggregate failure correlation function that specifies the conditional failure probability of the infrastructure given the failure of an individual system at that level. The survival probabilities of basic systems satisfy simple product-form, first-order differential equations expressed in terms of the multiplier functions. The utility functions of the provider and attacker are composed of the reward and cost terms, both expressed in terms of the component reinforcement and attack probabilities. The Nash equilibrium of this game is characterized, along with the sensitivity functions of the survival probabilities of basic systems that highlight their dependence individually on the cost-benefit terms, the correlation functions, and the multiplier functions. These results are illustrated using simplified models of a distributed cloud servers infrastructure, a 5G data network infrastructure, a high performance computing federation, and a smart energy grid infrastructure.

42 ENGINEERING↗

Multi-omics data compendium of pancreatic islet and β cell responses to pro-inflammatory cytokines

In type 1 diabetes (T1D), autoimmune response and inflammation cause the death of pancreatic ß cells, leading to the body’s inability to produce insulin and maintain glucose homeostasis. This process is at least in part mediated by pro-inflammatory cytokines, such as interferon (IFN)a, IFN?, interleukin (IL)-1ß, and tumor necrosis factor (TNF)a, which induce ß-cell dysfunction and apoptosis. A deep understanding of the ß-cell signaling and regulatory networks induced by these cytokines could lead to the identification of therapeutic targets to prevent T1D development. To study cytokine-mediated islets/ß-cell signaling and regulatory networks, a variety of omics experiments have been conducted, including transcriptomics, epigenomics (DNA methylation, UMI-4C, ATAC-seq & ChIP-seq), proteomics (bottom-up, top-down, post-translational modification analysis), lipidomics, and metabolomics. The combination of these datasets can be instrumental in identifying signaling components and regulatory factors involved in ß-cell stress/death. Here, we aggregated these multiple omics datasets into a centralized location, providing a quality-controlled and statistically rigorous resource for investigators seeking to holistically study ß-cell regulation by pro-inflammatory cytokines.

Sarkar, Soumyadeep [Pacific Northwest National Lab↗

The denatured state of HIV ‐1 protease under native conditions

Abstract The denatured state of several proteins has been shown to display transient structures that are relevant for folding, stability, and aggregation. To detect them by nuclear magnetic resonance (NMR) spectroscopy, the denatured state must be stabilized by chemical agents or changes in temperature. This makes the environment different from that experienced in biologically relevant processes. Using high‐resolution heteronuclear NMR spectroscopy, we have characterized several denatured states of a monomeric variant of HIV‐1 protease, which is natively structured in water, induced by different concentrations of urea, guanidinium chloride, and acetic acid. We have extrapolated the chemical shifts and the relaxation parameters to the denaturant‐free denatured state at native conditions, showing that they converge to the same values. Subsequently, we characterized the conformational properties of this biologically relevant denatured state under native conditions by advanced molecular dynamics simulations and validated the results by comparison to experimental data. We show that the denatured state of HIV‐1 protease under native conditions displays rich patterns of transient native and non‐native structures, which could be of relevance to its guidance through a complex folding process.

60 APPLIED LIFE SCIENCES↗