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At least 1,495 records · Page 83

Deep Learning Experiments for Tropical Cyclone Intensity Forecasts

Reducing tropical cyclone (TC) intensity forecast errors is a challenging task that has interested the operational forecasting and research community for decades. To address this, we developed a deep learning (DL)-based multilayer perceptron (MLP) TC intensity prediction model. The model was trained using the global Statistical Hurricane Intensity Prediction Scheme (SHIPS) predictors to forecast the change in TC maximum wind speed for the Atlantic basin. In the first experiment, a 24-h forecast period was considered. To overcome sample size limitations, we adopted a leave one year out (LOYO) testing scheme, where a model is trained using data from all years except one and then evaluated on the year that is left out. When tested on 2010–18 operational data using the LOYO scheme, the MLP outperformed other statistical–dynamical models by 9%–20%. Additional independent tests in 2019 and 2020 were conducted to simulate real-time operational forecasts, where the MLP model again outperformed the statistical–dynamical models by 5%–22% and achieved comparable results as HWFI. The MLP model also correctly predicted more rapid intensification events than all the four operational TC intensity models compared. In the second experiment, we developed a lightweight MLP for 6-h intensity predictions. When coupled with a synthetic TC track model, the lightweight MLP generated realistic TC intensity distribution in the Atlantic basin. Therefore, the MLP-based approach has the potential to improve operational TC intensity forecasts, and will also be a viable option for generating synthetic TCs for climate studies.

58 GEOSCIENCES↗

Identifying the quantum properties of hadronic resonances using machine learning

With the great promise of deep learning, discoveries of new particles at the Large Hadron Collider (LHC) may be imminent. Following the discovery of a new Beyond the Standard model particle in an all-hadronic channel, deep learning can also be used to identify its quantum numbers. Convolutional neural networks (CNNs) using jet-images can significantly improve upon existing techniques to identify the quantum chromodynamic (QCD) (‘color’) as well as the spin of a two-prong resonance using its substructure. Additionally, jet-images are useful in determining what information in the jet radiation pattern is useful for classification, which could inspire future taggers. These techniques improve the categorization of new particles and are an important addition to the growing jet substructure toolkit, for searches and measurements at the LHC now and in the future.

Filipek, Jakub↗

Rethinking skip connections in Spiking Neural Networks with Time-To-First-Spike coding

Time-To-First-Spike (TTFS) coding in Spiking Neural Networks (SNNs) offers significant advantages in terms of energy efficiency, closely mimicking the behavior of biological neurons. In this work, we delve into the role of skip connections, a widely used concept in Artificial Neural Networks (ANNs), within the domain of SNNs with TTFS coding. Our focus is on two distinct types of skip connection architectures: (1) addition-based skip connections, and (2) concatenation-based skip connections. We find that addition-based skip connections introduce an additional delay in terms of spike timing. On the other hand, concatenation-based skip connections circumvent this delay but produce time gaps between after-convolution and skip connection paths, thereby restricting the effective mixing of information from these two paths. To mitigate these issues, we propose a novel approach involving a learnable delay for skip connections in the concatenation-based skip connection architecture. This approach successfully bridges the time gap between the convolutional and skip branches, facilitating improved information mixing. We conduct experiments on public datasets including MNIST and Fashion-MNIST, illustrating the advantage of the skip connection in TTFS coding architectures. Additionally, we demonstrate the applicability of TTFS coding on beyond image recognition tasks and extend it to scientific machine-learning tasks, broadening the potential uses of SNNs.

97 MATHEMATICS AND COMPUTING↗

Extracting low energy signals from raw LArTPC waveforms using deep learning techniques -- A proof of concept

We investigate the feasibility of using deep learning techniques, in the form of a one-dimensional convolutional neural network (1D-CNN), for the extraction of signals from the raw waveforms produced by the individual channels of liquid argon time projection chamber (LArTPC) detectors. A minimal generic LArTPC detector model is developed to generate realistic noise and signal waveforms used to train and test the 1D-CNN, and evaluate its performance on low-level signals. We demonstrate that our approach overcomes the inherent shortcomings of traditional cut-based methods by extending sensitivity to signals with ADC values below their imposed thresholds. This approach exhibits great promise in enhancing the capabilities of future generation neutrino experiments like DUNE to carry out their low-energy neutrino physics programs.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

Deep learning approaches for neural decoding across architectures and recording modalities

Decoding behavior, perception or cognitive state directly from neural signals is critical for brain–computer interface research and an important tool for systems neuroscience. In the last decade, deep learning has become the state-of-the-art method in many machine learning tasks ranging from speech recognition to image segmentation. The success of deep networks in other domains has led to a new wave of applications in neuroscience. In this article, we review deep learning approaches to neural decoding. Here, we describe the architectures used for extracting useful features from neural recording modalities ranging from spikes to functional magnetic resonance imaging. Furthermore, we explore how deep learning has been leveraged to predict common outputs including movement, speech and vision, with a focus on how pretrained deep networks can be incorporated as priors for complex decoding targets like acoustic speech or images. Deep learning has been shown to be a useful tool for improving the accuracy and flexibility of neural decoding across a wide range of tasks, and we point out areas for future scientific development.

59 BASIC BIOLOGICAL SCIENCES↗

Testing Paired Neural Network Models for Aftershock Identification

Aftershock sequences are a burden to real-time seismic monitoring. Cross-correlation can be used because aftershocks exhibit similar waveforms, but the method is computationally expensive. Deep learning may be an alternative, as it is computationally efficient, but great attention to training and testing is required in order to trust that the model can generalize to new aftershock sequences. This is problematic for aftershock sequences, because large-magnitude earthquakes are unpredictable and are globally widespread. Here, we test several paired neural network (PNN) models trained on a augmented (noise-added) earthquake dataset, to determine whether they can be generalized to process real aftershock sequences. Two aftershock datasets that were originally detected by cross-correlation and subsequently validated by an expert analyst were used. We found that current PNN models struggle to generalize to aftershock sequences. However, we identify approaches to improve training future PNN models and believe that improvements may be achieved by transfer learning.

58 GEOSCIENCES↗

Quantum computing based hybrid deep learning for fault diagnosis in electrical power systems

Quantum computing (QC) and deep learning have shown promise of supporting transformative advances and have recently gained popularity in a wide range of areas. Here, this paper proposes a hybrid QC-based deep learning framework for fault diagnosis of electrical power systems that combine the feature extraction capabilities of conditional restricted Boltzmann machine with an efficient classification of deep networks. Computational challenges stemming from the complexities of such deep learning models are overcome by QC-based training methodologies that effectively leverage the complementary strengths of quantum assisted learning and classical training techniques. The proposed hybrid QC-based deep learning framework is tested on a simulated electrical power system with 30 buses and wide variations of substation and transmission line faults, to demonstrate the framework’s applicability, efficiency, and generalization capabilities. High computational efficiency is enjoyed by the proposed hybrid approach in terms of computational effort required and quality of diagnosis performance over classical training methods. In addition, superior and reliable fault diagnosis performance with faster response time is achieved over state-of-the-art pattern recognition methods based on artificial neural networks (ANN) and decision trees (DT).

42 ENGINEERING↗

Toward Physics-informed Neural Networks for 3D Multi-layer Cloud Mask Reconstruction

Three-dimensional (3D) cloud retrievals are critical for understanding their impact on climate and other applications such as aviation safety, weather prediction, and remote sensing. However, obtaining high-resolution and accurate vertical representation of clouds remains unsolved due to the limitations imposed by satellite instrumentation, viewing conditions, and the complexity of cloud dynamics. Cloud masks are essential for comprehending various cloud vertical properties, but deriving accurate 3D cloud masks from 2D satellite imagery data is a challenging task. To tackle these challenges, we introduce a physics-informed loss function for training deep learning models that can extend 2D cloud images into 3D cloud masks. The proposed loss, called CloudMask Loss, is composed of two domain knowledge-informed loss terms: one for evaluating cloud position and thickness, and the other for measuring the number of layers. By combining these loss terms, we improve the trainability of the deep learning models for more accurate and meaningful results. We apply the proposed loss function to different neural networks and demonstrate significant improvements in multi-layer cloud mask reconstruction. Utilizing the same neural network architecture, our proposed loss outperforms standard binary crossentropy loss in terms of multi-layer cloud classification accuracy, number of layers accuracy, and thickness mean absolute error (MAE). The proposed loss function can be readily integrated into various neural network architectures, resulting in substantial performance gains in 3D cloud mask generation.

multi-layer clouds↗

A deep learning interatomic potential developed for atomistic simulation of carbon materials

Interatomic potentials based on neural-network machine learning method have attracted considerable attention in recent years owing to their outstanding ability to balance the accuracy and efficiency in atomistic simulations. In this work, a neural-network potential (NNP) for carbon is generated to simulate the structural properties of various carbon structures. The potential is trained using a database consisting of crystalline and liquid structures obtained by the first-principles density functional theory (DFT) calculations. The developed potential accurately predicts the energies and forces in crystalline and liquid carbon structures, the energetic stability of defected graphene, and the structures of amorphous carbon as the function of density. As a result, the excellent accuracy and transferability of the NNP provide a promising tool for accurate atomistic simulations of various carbon materials with faster speed and much lower cost.

36 MATERIALS SCIENCE↗

Deep learning insights into cosmological structure formation

The evolution of linear initial conditions present in the early Universe into extended halos of dark matter at late times can be computed using cosmological simulations. However, a theoretical understanding of this complex process remains elusive; in particular, the role of anisotropic information in the initial conditions in establishing the final mass of dark matter halos remains a long-standing puzzle. Here, we build a deep learning framework to investigate this question. We train a three-dimensional convolutional neural network to predict the mass of dark matter halos from the initial conditions, and quantify in full generality the amounts of information in the isotropic and anisotropic aspects of the initial density field about final halo masses. We find that anisotropies add a small, albeit statistically significant amount of information over that contained within spherical averages of the density field about final halo mass. However, the overall scatter in the final mass predictions does not change qualitatively with this additional information, only decreasing from 0.9 dex to 0.7 dex. Given such a small improvement, our results demonstrate that isotropic aspects of the initial density field essentially saturate the relevant information about final halo mass. Therefore, instead of searching for information directly encoded in initial conditions anisotropies, a more promising route to accurate, fast halo mass predictions is to add approximate dynamical information based e.g. on perturbation theory. More broadly, our results indicate that deep learning frameworks can provide a powerful tool for extracting physical insight into cosmological structure formation. Published by the American Physical Society 2024

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

Frame invariant neural network closures for Kraichnan turbulence

Numerical simulations of geophysical and atmospheric flows have to rely on parameterizations of subgrid scale processes due to their limited spatial resolution. Despite substantial progress in developing parameterization (or closure) models for subgrid scale (SGS) processes using physical insights and mathematical approximations, they remain imperfect and can lead to inaccurate predictions. In recent years, machine learning has been successful in extracting complex patterns from high-resolution spatio-temporal data, leading to improved parameterization models, and ultimately better coarse grid prediction. However, the inability to satisfy known physics and poor generalization hinders the application of these models for real-world problems. In this work, we put forth a frame invariant closure approach to improve the accuracy and generalizability of deep learning-based subgrid scale closure models by embedding physical symmetries directly into the structure of the neural network. Specifically, we utilized specialized layers within the convolutional neural network in such a way that desired constraints are theoretically guaranteed without the need for any regularization terms. We demonstrate our framework for a two-dimensional decaying turbulence test case mostly characterized by the forward enstrophy cascade. We show that our frame invariant SGS model (i) accurately predicts the subgrid scale source term, (ii) respects the physical symmetries such as translation, Galilean, and rotation invariance, and (iii) is numerically stable when implemented in coarse-grid simulation with generalization to different initial conditions and Reynolds number. This work opens up a possibility of connecting physics-based theories and data-driven modeling paradigms, and thus represents a promising step towards the development of physically consistent data-driven turbulence closure models.

42 ENGINEERING↗

Peak2Patch: High-Fidelity Functional Group Identification through Attention-Based Fusion of Infrared and Mass Spectra

Identifying molecular structure based on spectroscopic readings is a key task in a variety of chemical and biological applications. Common spectroscopy techniques, such as Infrared (IR) Spectroscopy and Mass Spectrometry (MS), provide detailed information on the structure of molecular compounds but nonetheless require expert-level knowledge to decode. Machine learning has emerged as a potential solution for automating structure prediction from chemical spectra; however, current approaches generally focus on single sensor modalities, neglecting to leverage the complementary information contained within differing spectra. In this paper, we introduce Peak2Patch, a novel approach to fusion-enhanced prediction of functional groups from IR and mass spectra. First, we perform a detailed comparison of backbone networks for encoding both sparse mass spectra and dense IR spectra and demonstrate the superior performance of transformer neural networks over current state-of-the-art convolutional neural networks. Second, we evaluate three broad categories of fusion: early (raw feature), middle (deep feature), and late (decision) fusion, demonstrating the potential of a deep feature fusion-based approach. Lastly, we present Peak2Patch, our attention-based fusion scheme, which leverages cross-attention to mix features between encoded tokens of the two modalities. We validate our approach on a publicly available multimodal spectroscopic data set of 790k simulated molecules, demonstrating a large improvement in functional group prediction over both the previous state-of-the-art and our own strong single-modal baselines.

Jacobson, Philip [Sandia National Laboratories (SN↗

Decoding the protein–ligand interactions using parallel graph neural networks

Abstract Protein–ligand interactions (PLIs) are essential for biochemical functionality and their identification is crucial for estimating biophysical properties for rational therapeutic design. Currently, experimental characterization of these properties is the most accurate method, however, this is very time-consuming and labor-intensive. A number of computational methods have been developed in this context but most of the existing PLI prediction heavily depends on 2D protein sequence data. Here, we present a novel parallel graph neural network (GNN) to integrate knowledge representation and reasoning for PLI prediction to perform deep learning guided by expert knowledge and informed by 3D structural data. We develop two distinct GNN architectures: $$\hbox {GNN}_{\mathrm{F}}$$ GNN F is the base implementation that employs distinct featurization to enhance domain-awareness, while $$\hbox {GNN}_{\mathrm{P}}$$ GNN P is a novel implementation that can predict with no prior knowledge of the intermolecular interactions. The comprehensive evaluation demonstrated that GNN can successfully capture the binary interactions between ligand and protein’s 3D structure with 0.979 test accuracy for $$\hbox {GNN}_{\mathrm{F}}$$ GNN F and 0.958 for $$\hbox {GNN}_{\mathrm{P}}$$ GNN P for predicting activity of a protein–ligand complex. These models are further adapted for regression tasks to predict experimental binding affinities and $$\hbox {pIC}_{\mathrm{50}}$$ pIC 50 crucial for compound’s potency and efficacy. We achieve a Pearson correlation coefficient of 0.66 and 0.65 on experimental affinity and 0.50 and 0.51 on $$\hbox {pIC}_{\mathrm{50}}$$ pIC 50 with $$\hbox {GNN}_{\mathrm{F}}$$ GNN F and $$\hbox {GNN}_{\mathrm{P}}$$ GNN P , respectively, outperforming similar 2D sequence based models. Our method can serve as an interpretable and explainable artificial intelligence (AI) tool for predicted activity, potency, and biophysical properties of lead candidates. To this end, we show the utility of $$\hbox {GNN}_{\mathrm{P}}$$ GNN P on SARS-Cov-2 protein targets by screening a large compound library and comparing the prediction with the experimentally measured data.

59 BASIC BIOLOGICAL SCIENCES↗

DiHydrogen

DiHydrogen is the second version of the Hydrogen fork of the well-known distributed linear algebra library, Elemental. DiHydrogen is a GPU-accelerated distributed multilinear algebra interface with a particular emphasis on the needs of the scalable distributed deep learning training and inference. DiHydrogen is part of the Livermore Big Artificial Neural Network (LBANN) software stack.

Maruyama, Naoya↗

Identifying Neutrino Final States and Energies in MicroBooNE with New Deep-Learning Based LArTPC Reconstruction Frameworks

MicroBooNE, a Liquid Argon Time Projection Chamber (LArTPC) located in the $\nu_{\mu}$-dominated Booster Neutrino Beam at Fermilab, has been studying $\nu_{e}$ charged-current (CC) interaction rates to shed light on the MiniBooNE low energy excess. The LArTPC technology employed by MicroBooNE provides the capability to image neutrino interactions with mm-scale precision. Computer vision and other machine learning techniques are promising tools for image processing that could boost efficiencies for selecting $\nu_{e}$-CC and other rare signals, reduce cosmic and beam-induced backgrounds, and improve the reconstruction of neutrino energies. The MicroBooNE experiment has been at the forefront of developing and testing such techniques for use in physics analyses. In this poster we overview deep-learning based reconstruction methods. We will showcase the use of a recurrent neural network to estimate neutrino energies and present a new reconstruction framework that uses convolutional neural networks to locate neutrino interaction vertices, tag pixels with track and shower labels, and perform particle identification on reconstructed clusters. We will present studies characterizing the performance of these new tools and demonstrate their effectiveness through their use in an inclusive $\nu_{e}$-CC event selection.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Towards AI Based Data Classification for Decision Making During Testing

During the development of high-consequence items, test systems should be capable of differentiating between test failures resulting from narrowly missing requirements versus those indicating potentially catastrophic faults. In many instances, classifying the data corresponds to simply identifying whether measured waveforms have approximately the anticipated shape. Cast in this light, the problem reduces to converting raw data into a form optimal for use with neural network classifiers. This manuscript investigates different means of representing raw data for image classification. Raw data plots and Short Time Fourier Transform (STFT) spectrograms are classified by both custom built, small-scale, Convolution Neural Networks (CNN) and open-source, multi-million parameter, pre-trained deep CNNs. In the case of time varying frequency content, the STFTs provide images with greater detail and can be accurately classified with simpler networks. This requires less memory and runs faster than classifying the raw data using the more sophisticated options—making STFTs optimal for applications with memory constraints. STFTs are not a panacea. In some cases the time-domain signal contains useful information that should not be discarded. Rather than using raw data or STFTs, the images can be constructed from both by using red and green channels of an RGB image to visualize the real and imaginary components of the transform, with the raw data occupying the blue channel.

97 MATHEMATICS AND COMPUTING↗

Identifying Neutrino Final States and Energies in MicroBooNE with New Deep-Learning Based LArTPC Reconstruction Frameworks

MicroBooNE, a Liquid Argon Time Projection Chamber (LArTPC) located in the $\nu_{\mu}$-dominated Booster Neutrino Beam at Fermilab, has been studying $\nu_{e}$ charged-current (CC) interaction rates to shed light on the MiniBooNE low energy excess. The LArTPC technology employed by MicroBooNE provides the capability to image neutrino interactions with mm-scale precision. Computer vision and other machine learning techniques are promising tools for image processing that could boost efficiencies for selecting $\nu_{e}$-CC and other rare signals, reduce cosmic and beam-induced backgrounds, and improve the reconstruction of neutrino energies. The MicroBooNE experiment has been at the forefront of developing and testing such techniques for use in physics analyses. In this poster we overview deep-learning based reconstruction methods. We will showcase the use of a recurrent neural network to estimate neutrino energies and present a new reconstruction framework that uses convolutional neural networks to locate neutrino interaction vertices, tag pixels with track and shower labels, and perform particle identification on reconstructed clusters. We will present studies characterizing the performance of these new tools and demonstrate their effectiveness through their use in an inclusive $\nu_{e}$-CC event selection.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗