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At least 1,495 records · Page 83

SU-E-T-165: Evaluation of Inhomogeneity Calculations for Electron Beams in Raystation Monte Carlo Algorithm

Purpose: To evaluate the accuracy of the Raystation electron Monte Carlo algorithm for bone and air inhomogeneity. Methods: A solid water phantom slab was drilled to contain two openings of 1.3cm diameter, 0.6cm apart. The center of the opening is at 1cm depth from the surface. Two Teflon rods of exact same diameter were inserted to investigate bone inhomogeneity. Slab is 2cm total in thickness and was placed on top of 10cm solid water. Plans were created in Raystation with clinical settings previously established for 6, 9, 12, 15 and 18MeV Elekta Infinity beams. Coronal profiles were extracted posteriorly to the inhomogeneity. EBT3 films were irradiated under the same conditions and analyzed using FilmQAPro using the red channel. Calibration films were used for all energies. Same plans and films were performed for a Varian accelerator with same energies and Eclipse Monte Carlo. Results: Air Inhomogeneities: For lower energies, Raystation- Film agreement is less than 1% for the regions of the air cavity. In the lateral interface border, Raystation underestimates dose by approximately 2%. Eclipse results are similar. For higher energies, Raystation-Film agreement remains the same across the air cavity and interface. Eclipse-Film difference increases with energy up to 5% for 18MeV, with Eclipse calculating higher doses than the film at the interface. Bone Inhomogeneities: For lower energies, Raystation underestimates the dose behind the bone up to 12%. Eclipse underestimates the dose in the same area up to 18%. For higher energies, the dose difference behind the bone decreases to 1% for Raystation and 3% for Eclipse. At the lateral interface, Raystation underestimates the dose by 2.2% and Eclipse underestimates the dose by 5%. Conclusion: Raystation prediction for air and bone is acceptable. Maximum deviations are consistent with algorithm limitations. Differences between calculations and measurement are closer for Raystation than for Eclipse.

60 APPLIED LIFE SCIENCES↗

SU-C-BRB-03: Novel Technique to Implement GRID Therapy in a Commercial Treatment Planning System

Purpose: Due to the difficulty of creating an accurate multi-aperture block in treatment planning systems (TPS), spatially fractionated radiation therapy (GRID Therapy) is limited to clinical setups using simple monitor unit calculations. In this work, we present a novel approach to accurately model a grid block in a TPS and evaluate its dosimetric accuracy. Methods: An acrylic GRID block was fashioned such that the hole size and spacing were the same dimensions of the brass GRID block (dotDecimal) at isocenter. Holes were non-divergent and drilled 1 cm deep. CT scans (RT Lightspeed, GE Healthcare) of the block were acquired using axial slices with a thickness of 0.625 mm. These were imported into Eclipse (version 11, Varian Medical Systems) and holes were auto-contoured into structures. The GRID block was created in Eclipse by forming apertures around the hole structures using a simple three step process. Treatment plans were created in a water-equivalent phantom using 6 and 10 MV beams, delivered with a linear accelerator (Clinac iX, Varian Medical Systems) and measured using a water tank, film and a diode array. Results: Comparisons of percent depth dose curves and profiles at depths of maximum dose, 5cm, and 10cm for field sizes ranging from 5 cm{sup 2} to 25 cm{sup 2} using water and film were within 3% of their respective positions in Eclipse. GRID plans utilizing various jaw sizes and MLC blocking measured with film and a diode array showed pass rates with an average of 97% using Gamma analysis at 3%/ 3 mm and no lower than 93%. Conclusion: We have developed a simple yet accurate method of incorporating a GRID block into a commercially available TPS and demonstrated that the TPS accurately reflects the dose delivered. This will allow for real-time planning using patient scans and encourage new methods for GRID therapy. Support provided by dotDecimal, Sanford, FL.

60 APPLIED LIFE SCIENCES↗

SU-C-207-07: Quantification of Coronary Artery Cross-Sectional Area in CT Angiography Using Integrated Density: A Phantom Study

Purpose: To investigate the feasibility of quantifying the cross-sectional area (CSA) of coronary arteries using integrated density in a physics-based model with a phantom study. Methods: In this technique the total integrated density of the object as compared with its local background is measured so it is possible to account for the partial volume effect. The proposed method was compared to manual segmentation using CT scans of a 10 cm diameter Lucite cylinder placed inside a chest phantom. Holes with cross-sectional areas from 1.4 to 12.3 mm{sup 2} were drilled into the Lucite and filled with iodine solution, producing a contrast-to-noise ratio of approximately 26. Lucite rods 1.6 mm in diameter were used to simulate plaques. The phantom was imaged with and without the Lucite rods placed in the holes to simulate diseased and normal arteries, respectively. Linear regression analysis was used, and the root-mean-square deviations (RMSD) and errors (RMSE) were computed to assess the precision and accuracy of the measurements. In the case of manual segmentation, two readers independently delineated the lumen in order to quantify the inter-reader variability. Results: The precision and accuracy for the normal vessels using the integrated density technique were 0.32 mm{sup 2} and 0.32 mm{sup 2}, respectively. The corresponding results for the manual segmentation were 0.51 mm{sup 2} and 0.56 mm{sup 2}. In the case of diseased vessels, the precision and accuracy of the integrated density technique were 0.46 mm{sup 2} and 0.55 mm{sup 2}, respectively. The corresponding results for the manual segmentation were 0.75 mm{sup 2} and 0.98 mm{sup 2}. The mean percent difference for the two readers was found to be 8.4%. Conclusion: The CSA based on integrated density had improved precision and accuracy as compared with manual segmentation in a Lucite phantom. The results indicate the potential for using integrated density to improve CSA measurements in CT angiography.

60 APPLIED LIFE SCIENCES↗

SU-E-J-03: Characterization of the Precision and Accuracy of a New, Preclinical, MRI-Guided Focused Ultrasound System for Image-Guided Interventions in Small-Bore, High-Field Magnets

Purpose: MRI-guided focused ultrasound (MRgFUS) has many potential and realized applications including controlled heating and localized drug delivery. The development of many of these applications requires extensive preclinical work, much of it in small animal models. The goal of this study is to characterize the spatial targeting accuracy and reproducibility of a preclinical high field MRgFUS system for thermal ablation and drug delivery applications. Methods: The RK300 (FUS Instruments, Toronto, Canada) is a motorized, 2-axis FUS positioning system suitable for small bore (72 mm), high-field MRI systems. The accuracy of the system was assessed in three ways. First, the precision of the system was assessed by sonicating regular grids of 5 mm squares on polystyrene plates and comparing the resulting focal dimples to the intended pattern, thereby assessing the reproducibility and precision of the motion control alone. Second, the targeting accuracy was assessed by imaging a polystyrene plate with randomly drilled holes and replicating the hole pattern by sonicating the observed hole locations on intact polystyrene plates and comparing the results. Third, the practicallyrealizable accuracy and precision were assessed by comparing the locations of transcranial, FUS-induced blood-brain-barrier disruption (BBBD) (observed through Gadolinium enhancement) to the intended targets in a retrospective analysis of animals sonicated for other experiments. Results: The evenly-spaced grids indicated that the precision was 0.11 +/− 0.05 mm. When image-guidance was included by targeting random locations, the accuracy was 0.5 +/− 0.2 mm. The effective accuracy in the four rodent brains assessed was 0.8 +/− 0.6 mm. In all cases, the error appeared normally distributed (p<0.05) in both orthogonal axes, though the left/right error was systematically greater than the superior/inferior error. Conclusions: The targeting accuracy of this device is sub-millimeter, suitable for many preclinical applications including focused drug delivery and thermal therapy. Funding support provided by Philips Healthcare.

60 APPLIED LIFE SCIENCES↗

SU-E-T-04: 3D Dose Based Patient Compensator QA Procedure for Proton Radiotherapy

Purpose: In proton double-scattering radiotherapy, compensators are the essential patient specific devices to contour the distal dose distribution to the tumor target. Traditional compensator QA is limited to checking the drilled surface profiles against the plan. In our work, a compensator QA process was established that assess the entire compensator including its internal structure for patient 3D dose verification. Methods: The fabricated patient compensators were CT scanned. Through mathematical image processing and geometric transformations, the CT images of the proton compensator were combined with the patient simulation CT images into a new series of CT images, in which the imaged compensator is placed at the planned location along the corresponding beam line. The new CT images were input into the Eclipse treatment planning system. The original plan was calculated to the combined CT image series without the plan compensator. The newly computed patient 3D dose from the combined patientcompensator images was verified against the original plan dose. Test plans include the compensators with defects intentionally created inside the fabricated compensators. Results: The calculated 3D dose with the combined compensator and patient CT images reflects the impact of the fabricated compensator to the patient. For the test cases in which no defects were created, the dose distributions were in agreement between our method and the corresponding original plans. For the compensator with the defects, the purposely changed material and a purposely created internal defect were successfully detected while not possible with just the traditional compensator profiles detection methods. Conclusion: We present here a 3D dose verification process to qualify the fabricated proton double-scattering compensator. Such compensator detection process assesses the patient 3D impact of the fabricated compensator surface profile as well as the compensator internal material and structure changes. This research receives funding support from CURA Medical Technologies.

60 APPLIED LIFE SCIENCES↗

SU-E-T-454: Impact of Air Gap On PDDs of 6 MV Photon Beam for Various Field Sizes in Inhomogeneous Phantoms

Purpose: To investigate how the shape of air gap and its size will impact the percent depth doses (PDDs) of a 6MV photon beam for various field sizes. Methods: Two in-house phantoms were manufactured containing rectangular (phantom A) and circular (phantom B) air gaps. Both phantoms A and B were composed of same top layer (solid-water; 30×30cm{sup 2},5cm thickness) and bottom layer (solid-water; 30×30cm {sup 2},8cm thickness), but middle layer was varied to observe air gap effects and scatter contribution to the measurement point. In phantom A, a rectangular shaped air gap (30×30cm{sup 2},7cm thickness) was created by placing Styrofoam blocks between top and bottom layers of the phantom. In phantom B, middle layer was replaced by “inhomogenous block”, composed of acrylic plate (30×30cm{sup 2}, 4cm thickness) followed by PVC(30×30cm{sup 2},3cm thickness). Additionally, circular air gap was created by drilling a hole (diameter=2.8cm, length=7cm) at the center of “inhomogenous block”. In both phantoms, measurement readings were obtained at 13cm depth (i.e., 1cm after air gap) and depth of maximum dose(6MV energy; 100 MUs; field sizes ranged from 3×3cm{sup 2} to 10×10cm{sup 2}). The PDDs at 13cm depth were compared in both phantoms. Results: The measurements in both phantoms A and B showed an almost linear increase in PDDs with increasing field size, especially for smaller field sizes (from 3×3 to 7×7cm{sup 2}). For each field size, the PDD in phantom A was smaller compared to the one in phantom B. The difference in PDDs between two phantoms decreased with an increase in field size as the PDD difference decreased from 9.0% to 6.4%. Conclusion: The shape and size of air gap affect the PDD measurements in secondary build-up region as 6 MV primary beam traverses through the center of air gap. The scatter contribution due to increase in field size was more noticeable for field sizes ≤7×7cm{sup 2}.

60 APPLIED LIFE SCIENCES↗

Technical Note: Partial body irradiation of mice using a customized PMMA apparatus and a clinical 3D planning/LINAC radiotherapy system

Purpose: In vivo radiobiology experiments involving partial body irradiation (PBI) of mice are of major importance because they allow for the evaluation of individual organ tolerance; overcoming current limitations of experiments using lower dose, whole body irradiation. In the current study, the authors characterize and validate an effective and efficient apparatus for multiple animal PBI, directed to the head, thorax, or abdomen of mice. Methods: The apparatus is made of polymethylmethacrylate and consists of a rectangular parallelepiped prism (40 cm × 16 cm × 8 cm), in which five holes were drilled to accomodate standard 60 ml syringes, each housing an unanesthetized, fully immobilized mouse. Following CT-scanning and radiotherapy treatment planning, radiation fields were designed to irradiate the head, thorax, or abdomen of the animal. Thermoluminescent dosimeters (TLDs) were used to confirm the treatment planning dosimetry for primary beam and scattered radiation. Results: Mice are efficiently placed into 60 ml syringes and immobilized, without the use of anesthetics. Although partial rotational movement around the longitudinal axis and a minor 2 mm forward/backward movement are permitted, this does not compromise the irradiation of the chosen body area. TLDs confirmed the dose values predicted by the treatment planning dosimetry, both for primary beam and scattered radiation. Conclusions: The customized PMMA apparatus described and validated is cost-effective, convenient to use, and efficient in performing PBI without the use of anesthesia. The developed apparatus permits the isolated irradiation of the mouse head, thorax, and abdomen. Importantly, the apparatus allows the delivery of PBI to five mice, simultaneously, representing an efficient way to effectively expose a large number of animals to PBI through multiple daily fractions, simulating clinical radiotherapy treatment schedules.

60 APPLIED LIFE SCIENCES↗

SU-C-209-05: Monte Carlo Model of a Prototype Backscatter X-Ray (BSX) Imager for Projective and Selective Object-Plane Imaging

Purpose: To develop a Monte Carlo N-Particle (MCNP) model for the validation of a prototype backscatter x-ray (BSX) imager, and optimization of BSX technology for medical applications, including selective object-plane imaging. Methods: BSX is an emerging technology that represents an alternative to conventional computed tomography (CT) and projective digital radiography (DR). It employs detectors located on the same side as the incident x-ray source, making use of backscatter and avoiding ring geometry to enclose the imaging object. Current BSX imagers suffer from low spatial resolution. A MCNP model was designed to replicate a BSX prototype used for flaw detection in industrial materials. This prototype consisted of a 1.5mm diameter 60kVp pencil beam surrounded by a ring of four 5.0cm diameter NaI scintillation detectors. The imaging phantom consisted of a 2.9cm thick aluminum plate with five 0.6cm diameter holes drilled halfway. The experimental image was created using a raster scanning motion (in 1.5mm increments). Results: A qualitative comparison between the physical and simulated images showed very good agreement with 1.5mm spatial resolution in plane perpendicular to incident x-ray beam. The MCNP model developed the concept of radiography by selective plane detection (RSPD) for BSX, whereby specific object planes can be imaged by varying kVp. 10keV increments in mean x-ray energy yielded 4mm thick slice resolution in the phantom. Image resolution in the MCNP model can be further increased by increasing the number of detectors, and decreasing raster step size. Conclusion: MCNP modelling was used to validate a prototype BSX imager and introduce the RSPD concept, allowing for selective object-plane imaging. There was very good visual agreement between the experimental and MCNP imaging. Beyond optimizing system parameters for the existing prototype, new geometries can be investigated for volumetric image acquisition in medical applications. This material is based upon work supported under an Integrated University Program Graduate Fellowship sponsored by the Department of Energy Office of Nuclear Energy.

60 APPLIED LIFE SCIENCES↗

SU-F-T-668: Irradiating Mouse Brain with a Clinical Linear Accelerator

Purpose: To design and construct a “mouse jig” device that would allow for irradiation of the mouse brain with a clinical Varian 6 MeV Linear Accelerator. This device must serve as a head immobilizer, gaseous anesthesia delivery, and radiation bolus concurrently. Methods: The mouse jig was machined out of nylon given that it is inexpensive, easy to machine, and has similar electron density to water. A cylindrical opening with diameter of 16 mm and 40 mm depth was drilled into a nylon block sized 56×56×50 mm (width, length, depth). Additional slots were included in the block for ear bars and a tooth bar to serve as a three-point immobilization device as well as for anesthesia delivery and scavenging. For ease of access when loading the mouse into the holder, there is a removable piece at the top of the block that is 15 mm in depth. This serves a dual purpose, as with the proper extra shielding, the mouse jig could be used with lower linear energy transfer photons with this piece removed. A baseplate was then constructed with five square slots where the mouse jig can securely be inserted plus additional slots that would allow the baseplate to be mounted on a standard lock bar in the treatment couch. This maximizes the reproducibility of placement between imaging and treatment and between treatment sessions. Results: CT imaging and radiation treatment planning was performed that showed acceptable coverage and uniformity of radiation dose in the mouse brain while sparing the throat and eyes. Conclusion: We have designed and manufactured a device that fulfills our criteria allowing us to selectively irradiate the mouse brain with a clinical linear accelerator. This setup will be used for generating mouse models of radiation-induced brain injury.

60 APPLIED LIFE SCIENCES↗

Slow slip source characterized by lithological and geometric heterogeneity

Slow slip events (SSEs) accommodate a significant proportion of tectonic plate motion at subduction zones, yet little is known about the faults that actually host them. The shallow depth (<2 km) of well-documented SSEs at the Hikurangi subduction zone offshore New Zealand offers a unique opportunity to link geophysical imaging of the subduction zone with direct access to incoming material that represents the megathrust fault rocks hosting slow slip. Two recent International Ocean Discovery Program Expeditions sampled this incoming material before it is entrained immediately down-dip along the shallow plate interface. Drilling results, tied to regional seismic reflection images, reveal heterogeneous lithologies with highly variable physical properties entering the SSE source region. These observations suggest that SSEs and associated slow earthquake phenomena are promoted by lithological, mechanical, and frictional heterogeneity within the fault zone, enhanced by geometric complexity associated with subduction of rough crust.

58 GEOSCIENCES↗

Deep-Subsurface Pressure Stimulates Metabolic Plasticity in Shale-Colonizing Halanaerobium spp.

Bacterial Halanaerobium strains become the dominant persisting microbial community member in produced fluids across geographically distinct hydraulically fractured shales. Halanaerobium is believed to be inadvertently introduced into this environment during the drilling and fracturing process and must therefore tolerate large changes in pressure, temperature, and salinity. Here, we used a Halanaerobium strain isolated from a natural gas well in the Utica Point Pleasant formation to investigate metabolic and physiological responses to growth under high-pressure subsurface conditions. Laboratory incubations confirmed the ability of Halanaerobium congolense strain WG8 to grow under pressures representative of deep shale formations (21 to 48 MPa). Under these conditions, broad metabolic and physiological shifts were identified, including higher abundances of proteins associated with the production of extracellular polymeric substances. Confocal laser scanning microscopy indicated that extracellular polymeric substance (EPS) production was associated with greater cell aggregation when biomass was cultured at high pressure.

59 BASIC BIOLOGICAL SCIENCES↗

The Microbial Community and Functional Potential in the Midland Basin Reveal a Community Dominated by Both Thiosulfate and Sulfate-Reducing Microorganisms

The Permian Basin is the highest producing oil and gas reservoir in the United States. Hydrocarbon resources in this region are often accessed by unconventional extraction methods, including horizontal drilling and hydraulic fracturing. Despite the importance of the Permian Basin, there is no publicly available microbiological data from this region. We completed an analysis of Permian produced water samples to understand the dynamics present in hydraulically fractured wells in this region. We analyzed produced water samples taken from 10 wells in the Permian region of the Midland Basin using geochemical measurements, 16S rRNA gene sequencing, and metagenomic sequencing. Compared to other regions, we found that Permian Basin produced water was characterized by higher sulfate and lower total dissolved solids (TDS) concentrations, with a median of 1,110 mg/L and 107,000 mg/L. Additionally, geochemical measurements revealed the presence of frac hits, or interwell communication events where an established well is affected by the pumping of fracturing fluid into a new well. The occurrence of frac hits was supported by correlations between the microbiome and the geochemical parameters. Our 16S rRNA gene sequencing identified a produced water microbiome characterized by anaerobic, halophilic, and sulfur reducing taxa. Interestingly, sulfate and thiosulfate reducing taxa including Halanaerobium, Orenia, Marinobacter, and Desulfohalobium were the most prevalent microbiota in most wells. We further investigated the metabolic potential of microorganisms in the Permian Basin with metagenomic sequencing. We recovered 15 metagenome assembled genomes (MAGs) from seven different samples representing 6 unique well sites. These MAGs corroborated the high presence of sulfate and thiosulfate reducing genes across all wells, especially from key taxa including Halanaerobium and Orenia. The observed microbiome composition and metabolic capabilities in conjunction with the high sulfate concentrations demonstrate a high potential for hydrogen sulfide production in the Permian Basin. Additionally, evidence of frac hits suggests the possibility for the exchange of microbial cells and/or genetic information between wells. This exchange would increase the likelihood of hydrogen sulfide production and has implications for the oil and gas industry.

16S RNA↗

Submarine deposits from pumiceous pyroclastic density currents traveling over water: An outstanding example from offshore Montserrat (IODP 340)

Pyroclastic density currents have been observed to both enter the sea, and to travel over water for tens of kilometers. Here, we identified a 1.2-m-thick, stratified pumice lapilli-ash cored at Site U1396 offshore Montserrat (Integrated Ocean Drilling Program [IODP] Expedition 340) as being the first deposit to provide evidence that it was formed by submarine deposition from pumice-rich pyroclastic density currents that traveled above the water surface. The age of the submarine deposit is ca. 4 Ma, and its magma source is similar to those for much younger Soufrière Hills deposits, indicating that the island experienced large-magnitude, sub-aerial caldera-forming explosive eruptions much earlier than recorded in land deposits. The deposit's combined sedimentological characteristics are incompatible with deposition from a submarine eruption, pyroclastic fall over water, or a submarine seafloor-hugging turbidity current derived from a subaerial pyroclastic density current that entered water at the shoreline. The stratified pumice lapilli-ash unit can be subdivided into at least three depositional units, with the lowermost one being clast supported. The unit contains grains in five separate size modes and has a >12 phi range. Particles are chiefly sub-rounded pumice clasts, lithic clasts, crystal fragments, and glass shards. Pumice clasts are very poorly segregated from other particle types, and lithic clasts occur throughout the deposit; fine particles are weakly density graded. We interpret the unit to record multiple closely spaced (< 2 d) hot pyroclastic density currents that flowed over the ocean, releasing pyroclasts onto the water surface, and settling of the various pyroclasts into the water column. Our settling and hot and cold flotation experiments show that waterlogging of pumice clasts at the water surface would have been immediate. The overall poor hydraulic sorting of the deposit resulted from mixing of particles from multiple pulses of vertical settling in the water column, attesting to complex sedimentation. Slow-settling particles were deposited on the seafloor together with faster-descending particles that were delivered at the water surface by subsequent pyroclastic flows. The final sediment pulses were eventually deflected upon their arrival on the seafloor and were deposited in laterally continuous facies. This study emphasizes the interaction between products of explosive volcanism and the ocean and discusses sedimentological complexities and hydrodynamics associated with particle delivery to water.

58 GEOSCIENCES↗

Temperature uncertainty modelling with proxy structural data as geostatistical constraints for well siting: an example applied to Granite Springs Valley, NV, USA

Utilizing existing temperature and structural geology information around Granite Springs Valley, Nevada, we build 3D stochastic temperature models with the aims of evaluating the 3D uncertainty of temperature and choosing between candidate exploration well locations. The data used to support the modelling are measured temperatures and structural proxies from 3D geologic modelling (distance to fault, distance to fault intersections and terminations, Coulomb stress change and dilation tendency), the latter considered ‘secondary’ data. Two stochastic geostatistical techniques are explored for incorporating the structural proxies: cosimulation and local varying mean. With both the cosimulation and local varying mean methods, many equally-likely temperature models (i.e. realizations) are produced, from which temperature probability profiles are calculated at candidate well locations. To aid in choosing between the candidate locations, two quantities summarize the temperature probabilities: V prior and entropy. V prior quantifies the likelihood for economic temperatures at each candidate location, whereas entropy identifies where new information has the most potential to reduce uncertainty. In general, the cosimulation realizations have smoother spatial structure, and extrapolate high temperatures at candidate locations that are located along the direction of the longest spatial correlation, which are down dip from existing temperature logs. The smooth realizations result in tight temperature probability profiles that are easier to interpret, but they have unrealistic temperature reversals in some locations because of the dipping ellipsoid shape created and that the cosimulation technique does not enforce a conductive geothermal gradient as a baseline (i.e. linearly increasing temperature with depth). The local varying mean results produce realizations with more realistic geothermal gradients, with temperatures increasing downward since a depth-temperature relationship is included. However, because they have much noisier spatial nature compared to cosimulation, it is harder to interpret the temperature probability profiles. The different local varying mean results allow the geologist to determine which proxy (e.g. dilation v. distance to fault termination) should be used given the specific geothermal system. In general, V prior from local varying mean results identify locations that are close to high values for the structural proxies: areas with higher probabilities for higher temperatures. The entropy results identify where uncertainty is greatest and therefore new drilling information could be most useful. Though these techniques provide useful information, even when applied to areas of sparse data, our comparison of these two techniques demonstrates the need for new geothermal geostatistics techniques that combine the advantages of these two methods and that are tailored to the spatial uncertainty issues inherent in geothermal exploration.

15 GEOTHERMAL ENERGY↗

New approaches to an old problem: addressing spatial gaps in the World Stress Map

Abstract A well-recognized characteristic of the World Stress Map (WSM) database is the continued presence of large spatial gaps in the distribution of the data records despite the more than 40-year development history of the database. The current release has more than 30 000 high-quality (A–C) data records (often referred to as ‘stress indicators’), but while some continental areas (such as Australia) have seen a significant increase in spatial converge with the latest release, other continental regions (Africa, central Asia, most of South America) remain markedly sparse. In this contribution we (1) review the current state of the spatial distribution of stress indicators in the continental regions (above sea-level); (2) quantify the clustering of the stress indicators in the latest WSM release using the Hopkins statistic as a way to explore the current spatial distribution of the indicators and assess future WSM releases; and (3) present three approaches (joint inversion, seismic anisotropy and InSAR) that provide a way to fill in the gaps (both in the S Hmax orientation and principal stress magnitudes) in regions that lack active seismicity and where borehole drilling is cost prohibitive. These three approaches have the potential to guide procedures for improving a priori estimates of the ambient stress field in the Earth's crust and reduce the uncertainty in predicting both the magnitude and orientation of the principal tectonic stresses.

58 GEOSCIENCES↗

Background Explorer

Tools to construct a model for sources of radioactive backgrounds in a low radioactivity dertector system Background explorer simplifies or automates many of the tedious and error-prone tasks involved in creating a detailed radioactivity budget for a low background detector system. The tool also provides a rich web interface allowing even nontechnical users to easily modify the model assumptions and drill-down into the model and result details. Backend: https://github.com/bloer/bgmodelbuilder Web application: https://github.com/bloer/bgexplorer Demo/user template: https://github.com/bloer/bgexplorer-demo

Loer, Ben↗

Value of Information App (Value of Information App for Binary Geothermal Decisions and Binary Geothermal Possibilities) (Negative/Positive) [SWR-25-15]

Code base to run Streamlit Value of Information App for binary decision with geothermal techno economics. An open-source VOI app that models binary decisions (e.g. do something (drill) or walk away (do nothing)) and binary geothermal scenarios (positive or negative) has been developed. Users can input their anticipated economic values (profits or losses) directly into the value matrix to represent all four combinations of these actions and geothermal possibilities. VOI in general requires probabilities to be assigned for “probability of success”, or probability of experiencing a positive geothermal scenario versus negative. The users of the App can toggle this probability of success both in the demo problem and in the Value of Imperfect Information problem. The VOI App allows users to upload their own labeled data to evaluate how well it allows them to distinguish between positive versus negative sites. We have been using IGNENIOUS data to test and demonstrate; industry members have prepared their own labeled data, and have present their examples from diverse use cases at a conference workshop. The VOI App is open to the public at: https://voigeothermalrising.streamlit.app

Trainor-Guitton, Whitney [National Renewable Energ↗

Elviz – exploration of metagenome assemblies with an interactive visualization tool

Metagenomics, the sequencing of DNA collected from an entire microbial community, enables the study of natural microbial consortia in their native habitats. Metagenomics studies produce huge volumes of data, including both the sequences themselves and metadata describing their abundance, assembly, predicted functional characteristics and environmental parameters. The ability to explore these data visually is critically important to meaningful biological interpretation. Current genomics applications cannot effectively integrate sequence data, assembly metadata, and annotation to support both genome and community-level inquiry. Elviz (Environmental Laboratory Visualization) is an interactive web-based tool for the visual exploration of assembled metagenomes and their complex metadata. Elviz allows scientists to navigate metagenome assemblies across multiple dimensions and scales, plotting parameters such as GC content, relative abundance, phylogenetic affiliation and assembled contig length. Furthermore Elviz enables interactive exploration using real-time plot navigation, search, filters, axis selection, and the ability to drill from a whole-community profile down to individual gene annotations. Thus scientists engage in a rapid feedback loop of visual pattern identification, hypothesis generation, and hypothesis testing. Compared to the current alternative of generating a succession of static figures, Elviz can greatly accelerate the speed of metagenome analysis. Elviz can be used to explore both user-submitted datasets and numerous metagenome studies publicly available at the Joint Genome Institute (JGI). Elviz is freely available at http://genome.jgi.doe.gov/viz and runs on most current web-browsers.

59 BASIC BIOLOGICAL SCIENCES↗