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Argonne National Laboratory Annual Report of Laboratory Directed Research and Development Program Activities FY 2014

Every day, scientists and engineers at Argonne National Laboratory make impor-tant discoveries that translate into a real difference in the world, working towards the Lab’s mission to develop energy solutions, preserve the environment, pro-tect the nation, and help the economy thrive.Argonne’s Laboratory Directed Research and Development (LDRD) program is key to advancing our leadership in science and technology and enables us to explore new ideas, build new capabilities, and address emerging research opportunities.LDRD is an invaluable resource for contributing to the future science and tech-nology needs of DOE and the nation. It helps us investigate new directions for Department programs while being able to adapt to new opportunities in a changing environment. Equally crucially, it serves to maintain and enhance the capabilities of both our staff and our R&D facilities.

36 MATERIALS SCIENCE↗

Superradiance Transition and Nonphotochemical Quenching in Photosynthetic Complexes

Photosynthetic organisms have evolved protective strategies to allow them to survive in cases of intense sunlight fluctuation with the development of nonphotochemical quenching (NPQ). This process allows light harvesting complexes to transfer the excess sunlight energy to non-damaging quenching channels. This report compares the NPQ process with the superradiance transition (ST). We demonstrated that the maximum of the NPQ efficiency is caused by the ST to the sink associated with the CTS. However, experimental verifications are required in order to determine whether or not the NPQ regime is associated with the ST transition for real photosynthetic complexes. Indeed, it can happen that, in the photosynthetic apparatus, the NPQ regime occurs in the “non-optimal” region of parameters, and it could be independent of the ST.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Safeguards Technology Factsheet - Unattended Dual Current Monitor (UDCM)

The UDCM is a low-current measurement device designed to record sub-nano-amp to micro-amp currents from radiation detectors. The UDCM is a two-channel device that incorporates a Commercial-Off-The-Shelf (COTS) processor enabling both serial over USB as well as Ethernet communications. The instrument includes microSD and USB flash memory for data storage as well as a programmable High Voltage (HV) power supply for detector bias. The UDCM is packaged in the same enclosure, employs the same processor and has a similar user interface as the UMSR. A serial over USB communication line to the UDCM allows the use of existing versions of MIC software, while the Ethernet port is compatible with the new IAEA RAINSTORM communication protocol.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

Photon Next-Event Estimator Implementation in MCATK

A photon next-event fluence estimator at a point has been implemented in the Monte Carlo Application Toolkit (MCATK). The next-event estimator provides an expected value estimator for the flux at a point due to all source and collision events. An advantage of the next-event estimator over track-length estimators, which are normally employed in MCATK, is that flux estimates can be made in locations that have no random walk particle tracks. The next-event estimator allows users to calculate radiographs and estimate response for detectors outside of the modeled geometry. The next-event estimator is not yet accessable through the MCATK FlatAPI for C and Fortran. The next-event estimator in MCATK has been tested against MCNP6 using 5 suites of test problems. No issues were found in the MCATK implementation. One issue was found in the exclusion radius approximation in MCNP6. The theory, implementation, and testing are described in this document.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

Science & Technology Review October/November 2016

At Lawrence Livermore National Laboratory, we focus on science and technology research to ensure our nation’s security. We also apply that expertise to solve other important national problems in energy, bioscience, and the environment. Science & Technology Review is published eight times a year to communicate, to a broad audience, the Laboratory’s scientific and technological accomplishments in fulfilling its primary missions. The publication’s goal is to help readers understand these accomplishments and appreciate their value to the individual citizen, the nation, and the world. The Laboratory is operated by Lawrence Livermore National Security, LLC (LLNS), for the Department of Energy’s National Nuclear Security Administration. LLNS is a partnership involving Bechtel National, University of California, Babcock & Wilcox, Washington Division of URS Corporation, and Battelle in affiliation with Texas A&M University. More information about LLNS is available online at www.llnsllc.com. Please address any correspondence (including name and address changes) to S&TR, Mail Stop L-664, Lawrence Livermore National Laboratory, P.O. Box 808, Livermore, California 94551, or telephone (925) 423-3893. Our e-mail address is str-mail@llnl.gov. S&TR is available on the Web at str.llnl.gov.

36 MATERIALS SCIENCE↗

Science & Technology Review January/February 2018

At Lawrence Livermore National Laboratory, we focus on science and technology research to ensure our nation’s security. We also apply that expertise to solve other important national problems in energy, bioscience, and the environment. Science & Technology Review is published eight times a year to communicate, to a broad audience, the Laboratory’s scientific and technological accomplishments in fulfilling its primary missions. The publication’s goal is to help readers understand these accomplishments and appreciate their value to the individual citizen, the nation, and the world.

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Final Technical Report--Quantitative analysis of metabolic regulation by integration of metabolomics, proteomics, and fluxomics

This project used an -omics driven systems biology approach to investigate metabolic regulation in a systematic, large-scale, and quantitative manner. Efforts involved two microorganisms, the biofuel producing yeast Saccharomyces cerevisiae and the cellulose degrading bacterium Clostridium celluloyticum. In yeast, we used a combination of metabolomics, proteomics, and fluxomics to measure enzyme concentrations, metabolite concentrations, and metabolic fluxes across 25 steady-state yeast cultures. We then assessed the extent to which flux can be explained by a Michaelis-Menten relationship between enzyme, substrate, product, and potential regulator concentrations. This revealed three novel instances of cross-pathway metabolic regulation which we biochemically verified. Overall, substrate concentrations were the strongest driver of the net rates of cellular metabolic reactions, with metabolite concentrations collectively having more than double the physiological impact of enzymes. Thus, our studies in yeast argued for metabolism being substantially cell-regulating. In the cellulolytic bacterium, we developed and employed new tracer strategies to measure glycolytic reaction reversibility and thereby thermodynamics. This resulted in the striking observation that C. cellulolyticum glycolysis is nearly fully thermodynamically reversible, with no strongly forward driven step. The phosphofructokinase step, which is strongly forward driven in most species, is modified to use inorganic pyrophosphate as opposed to ATP as the phosphate donor. This increases the ATP yield of glycolysis in exchange for its becoming a slow, reversible pathway. Thus, our studies in cellulolytic bacteria argued for their having evolved a uniquely energy-efficient form of glycolysis. Collectively, these findings highlight the importance of metabolite concentrations and enzyme cofactor choices in controlling pathway fluxes.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Science &Technology Review October/November 2018

At Lawrence Livermore National Laboratory, we focus on science and technology research to ensure our nation’s security. We also apply that expertise to solve other important national problems in energy, bioscience, and the environment. Science & Technology Review is published eight times a year to communicate, to a broad audience, the Laboratory’s scientific and technological accomplishments in fulfilling its primary missions. The publication’s goal is to help readers understand these accomplishments and appreciate their value to the individual citizen, the nation, and the world.

36 MATERIALS SCIENCE↗

Science & Technology Review September 2018

At Lawrence Livermore National Laboratory, we focus on science and technology research to ensure our nation’s security. We also apply that expertise to solve other important national problems in energy, bioscience, and the environment. Science & Technology Review is published eight times a year to communicate, to a broad audience, the Laboratory’s scientific and technological accomplishments in fulfilling its primary missions. The publication’s goal is to help readers understand these accomplishments and appreciate their value to the individual citizen, the nation, and the world.

36 MATERIALS SCIENCE↗

Progress Summary: Conducting quantum simulations of surface reactivity on actinide surfaces

Motivation: Surface chemistry of plutonium, uranium, and their oxides from gases in the ambient atmosphere of the application environment presents significant challenges due to the high degree of reactivity of the substrate and the ubiquity of these gases in experimental setups. Significance: Relatively little is known about the chemical mechanism and reaction rates for hydriding, and experimental studies would greatly benefit from detailed atomistic knowledge of the chemical reactivity on Pu and Pu-oxide surfaces.

36 MATERIALS SCIENCE↗

Online and Offline Monitoring of the ICARUS Detector

In preparation for the launch of the ICARUS -T600 far detector in the Short Baseline Neutrino program, (SBN), it is important to monitor the performance of the detector and quality of the data in real-time. Particularly important to monitor are noise levels of the TPC readout electronics, and the purity of the liquid argon in the TPC, as these can affect the overall sensitivity of the detector to detecting and reconstructing neutrino interactions.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

(U) LNK3DNT Capability in SENSMG Tested with Transport Correction

The SENSMG multigroup neutron sensitivity code can read materials and geometry from redoin and lnk3dnt files written by the PARTISN multigroup discrete ordinates code or the MCNP6 Monte Carlo code. Reference 5 described an initial version of this capability. Reference 6 introduced two important extensions: 1) Reaction-rate ratios are now allowed as responses with redoin/lnk3dnt inputs; and 2) Sensitivities of reaction-rate ratios to mass densities and interface locations are now calculated (for all problems, not just redoin/lnk3dnt problems). In this report, we document the testing of the redoin/lnk3dnt capability when used with transport correction. PARTISN’s transport corrections are described in Ref. 3, and Refs. 7 and 8 discuss the calculation of cross-section sensitivities when transport corrections are applied. References 7 and 8 verify SENSMG for problems with transport correction using central differences. This report verifies the capability with redoin/lnk3dnt inputs by comparison with regular SENSMG inputs. Unlike Refs. 5 and 6, in this report we use a spherical test problem because the sensitivity of the response with respect to the highest-order scattering is zero in cylinders due to the use of flux moments in the inner products.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗