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At least 1,495 records · Page 83

ERSAP: Toward Better NP Data-Stream Analytics With Flow-Based Programming

This paper presents an reactive, actor-model and FBP paradigm based framework that we develop to design data-stream processing applications for HEP and NP. This framework encourages a functional decomposition of the overall data processing application into small mono-functional artifacts. Artifacts that are easy to understand, develop, deploy and debug. The fact that these artifacts (actors) are programmatically independent they can be scaled and optimized independently, which is impossible to do for components of the monolithic application. One of the important advantages of this approach is fault tolerance where independent actors can come and go on the data-stream without forcing the entire application to crash. Furthermore, it also makes it is easy to locate the faulty actor in the data pipeline. Due the fact that the actors are loosely coupled, and that the data (inevitably) carries the context, they can run on heterogeneous environments, utilizing different accelerators. This paper describes the main design concepts of the framework and presents a ?proof of concept? application design and deployment results obtain processing on-beam calorimeter streaming data.

Gyurjyan, V.↗

Expediting field-effect transistor chemical sensor design with neuromorphic spiking graph neural networks

Improving the sensitive and selective detection of analytes in a variety of applications requires accelerating the rational design of field-effect transistor (FET) chemical sensors. Achieving high-performance detection relies on identifying optimal probe materials that can effectively interact with target analytes, a process traditionally driven by chemical intuition and time-consuming trial-and-error methods. To address the difficulties in probe screening for FET sensor development, this work presents a methodology that combines neuromorphic machine learning (ML) architectures, specifically a hybrid spiking graph neural network (SGNN), with an enriched dataset of physicochemical properties through semi-automated data extraction using large language models. Achieving a classification accuracy of 0.89 in predicting sensor sensitivity categories, the SGNN model outperformed traditional ML techniques by leveraging its ability to capture both global physicochemical properties and sparse topological features through a hybrid modeling framework. Next-generation sensor design was informed by the actionable insights into the connections between material properties and sensing performance offered by the SGNN framework. Through virtual screening for the detection of per- and polyfluoroalkyl substances (PFAS) as a use case, the effectiveness of the SGNN model was further validated. Density functional theory simulations confirmed graphene as a promising active material for PFAS detection as suggested by the SGNN framework. By bridging gaps in predictive modeling and data availability, this integrated approach provides a strong foundation for accelerating advancements in FET sensor design and innovation.

Ferreira, Rodrigo Pires [Univ. of Chicago, IL (Uni↗

Microbial spies and bloggers: programming cells to convert environmental information into discernible signals

Microbes regulate their dynamic behaviors using the chemical and physical characteristics of their environment. The ability of microbes to continuously convert this physicochemical information into biochemical information and to use organic matter in the environment as a power source makes these organisms attractive as chassis for building sensors. However, most biosensors have severe limitations when considering applications in hard-to-image settings like soils, sediments, and wastewater. Emerging technologies at the interface of biomolecular design, microbiome engineering, and synthetic biology offer new tools to program cells and communities as biosensors for these settings. Here, in this review, we describe innovations in biosensor outputs that are enabling new applications in complex environments, including reporters that are read out using electrochemical, gas chromatography, hyperspectral imaging, and next-generation sequencing methods. We also discuss computational advances that are accelerating the diversification of sensing components by mining metagenomics data for new transcriptional regulators and by designing allosteric protein switches that directly regulate reporter outputs using analytes. We highlight emerging opportunities for programming undomesticated microbes in communities to function as distributed sensors in the environment. Finally, we discuss the need for responsible biosensor development and to modernize regulatory frameworks to support evidence-based assessment of environmental biosensors.

analyte↗

gLaSDI: Parametric physics-informed greedy latent space dynamics identification

A parametric adaptive physics-informed greedy Latent Space Dynamics Identification (gLaSDI) method is proposed for accurate, efficient, and robust data-driven reduced-order modeling of high-dimensional nonlinear dynamical systems. In the proposed gLaSDI framework, an autoencoder discovers intrinsic nonlinear latent representations of high-dimensional data, while dynamics identification (DI) models capture local latent-space dynamics. Here, an interactive training algorithm is adopted for the autoencoder and local DI models, which enables identification of simple latent-space dynamics and enhances accuracy and efficiency of data-driven reduced-order modeling. To maximize and accelerate the exploration of the parameter space for the optimal model performance, an adaptive greedy sampling algorithm integrated with a physics-informed residual-based error indicator and random-subset evaluation is introduced to search for the optimal training samples on the fly. Further, to exploit local latent-space dynamics captured by the local DI models for an improved modeling accuracy with a minimum number of local DI models in the parameter space, a -nearest neighbor convex interpolation scheme is employed. The effectiveness of the proposed framework is demonstrated by modeling various nonlinear dynamical problems, including Burgers equations, nonlinear heat conduction, and radial advection. The proposed adaptive greedy sampling outperforms the conventional predefined uniform sampling in terms of accuracy. Compared with the high-fidelity models, gLaSDI achieves 17 to 2,658× speed-up with 1 to 5% relative errors.

97 MATHEMATICS AND COMPUTING↗

Evaluating Enhanced Reservoir Evaporation Losses From CMIP6‐Based Future Projections in the Contiguous United States

Abstract Enhanced reservoir evaporation has become an emerging concern regarding water loss, especially when compounded with the ever‐increasing water demand. In this study, we evaluated the evaporation rates and losses for 678 major reservoirs (representing nearly 90% of total storage capacity) in the Contiguous United States over historical baseline (1980–2019), near‐term (2020–2039), and mid‐term (2040–2059) future periods. The evaporation rate was estimated using the Lake Evaporation Model (LEM), an advanced lake evaporation model that addresses both heat storage and fetch effects, driven by multi‐ensemble downscaled Coupled Model Intercomparison Projects 6 (CMIP6) projections under the SSP585 emission scenario. The results project that the evaporation loss may increase by 2.5 × 10 7 m 3 /yr through the research period (1980–2059). Among all regions, the Rio Grande is projected to have the largest increasing rate in the near‐term and mid‐term future, with values of 7.11% of 10.25%, respectively. At the seasonal scale, the most significant increase in the evaporation rate is projected during the fall. The evaporation is projected to increase faster than the streamflow over many of the regions in the southwestern US during the summer/fall, suggesting that the shortage of water will be further exacerbated. The climate models contribute the most to the variance, as compared to the other components related to the projection of evaporation losses (e.g., hydrological model, downscaling method, and historical meteorological data set). These findings demonstrate the need to consider accelerated water loss through open water evaporation in long‐term water resources planning across various spatiotemporal scales.

54 ENVIRONMENTAL SCIENCES↗

Laboratory realization of relativistic pair-plasma beams

Relativistic electron-positron plasmas are ubiquitous in extreme astrophysical environments such as black-hole and neutron-star magnetospheres, where accretion-powered jets and pulsar winds are expected to be enriched with electron-positron pairs. Their role in the dynamics of such environments is in many cases believed to be fundamental, but their behavior differs significantly from typical electron-ion plasmas due to the matter-antimatter symmetry of the charged components. So far, our experimental inability to produce large yields of positrons in quasi-neutral beams has restricted the understanding of electron-positron pair plasmas to simple numerical and analytical studies, which are rather limited. We present the first experimental results confirming the generation of high-density, quasi-neutral, relativistic electron-positron pair beams using the 440 GeV/c beam at CERN’s Super Proton Synchrotron (SPS) accelerator. Monte Carlo simulations agree well with the experimental data and show that the characteristic scales necessary for collective plasma behavior, such as the Debye length and the collisionless skin depth, are exceeded by the measured size of the produced pair beams. Our work opens up the possibility of directly probing the microphysics of pair plasmas beyond quasi-linear evolution into regimes that are challenging to simulate or measure via astronomical observations.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

Optical neural engine for solving scientific partial differential equations

Abstract Solving partial differential equations (PDEs) is the cornerstone of scientific research and development. Data-driven machine learning (ML) approaches are emerging to accelerate time-consuming and computation-intensive numerical simulations of PDEs. Although optical systems offer high-throughput and energy-efficient ML hardware, their demonstration for solving PDEs is limited. Here, we present an optical neural engine (ONE) architecture combining diffractive optical neural networks for Fourier space processing and optical crossbar structures for real space processing to solve time-dependent and time-independent PDEs in diverse disciplines, including Darcy flow equation, the magnetostatic Poisson’s equation in demagnetization, the Navier-Stokes equation in incompressible fluid, Maxwell’s equations in nanophotonic metasurfaces, and coupled PDEs in a multiphysics system. We numerically and experimentally demonstrate the capability of the ONE architecture, which not only leverages the advantages of high-performance dual-space processing for outperforming traditional PDE solvers and being comparable with state-of-the-art ML models but also can be implemented using optical computing hardware with unique features of low-energy and highly parallel constant-time processing irrespective of model scales and real-time reconfigurability for tackling multiple tasks with the same architecture. The demonstrated architecture offers a versatile and powerful platform for large-scale scientific and engineering computations.

Tang, Yingheng (ORCID:0009000153622546)↗

Megahertz single-particle imaging at the European XFEL

The emergence of high repetition-rate X-ray free-electron lasers (XFELs) powered by superconducting accelerator technology enables the measurement of significantly more experimental data per day than was previously possible. The European XFEL is expected to provide 27,000 pulses per second, over two orders of magnitude more than any other XFEL. The increased pulse rate is a key enabling factor for single-particle X-ray diffractive imaging, which relies on averaging the weak diffraction signal from single biological particles. Taking full advantage of this new capability requires that all experimental steps, from sample preparation and delivery to the acquisition of diffraction patterns, are compatible with the increased pulse repetition rate. Here, we show that single-particle imaging can be performed using X-ray pulses at megahertz repetition rates. The results obtained pave the way towards exploiting high repetition-rate X-ray free-electron lasers for single-particle imaging at their full repetition rate.

36 MATERIALS SCIENCE↗

Determining the electrical conductivity of metals using the 2 MA Thor pulsed power driver

We present the development of a pulsed power experimental technique to infer the electrical conductivity of metals from ambient to high energy density conditions. The method is implemented on Thor, a moderate scale (1–2 MA) pulsed power driver. The electrical conductivity of copper at elevated temperature (>4000 K) and pressure (>10 GPa) is determined, and a new tabular material model is developed, guided by density functional theory, which preserves agreement with existing experimental data. Minor modifications (<10%) are found to be necessary to the previous Lee–More–Desjarlais model isotherms in the vicinity of the melt transition in order to account for observed discrepancies with the new experimental data. An analytical model for magnetic direct drive flyer acceleration and Joule heating induced vaporization based on the Tsiolkovsky “rocket equation” is presented to assess sensitivity of the method to minor changes in electrical conductivity.

47 OTHER INSTRUMENTATION↗

ARETE: Accurate Error Assessment via Machine Learning-Guided Dynamic-Timing Analysis

Nanometer circuits are increasingly prone to timing errors, escalating the need for fault injection frameworks to accurately evaluate their impact on applications. Here in this paper, we propose ARETE, a novel cross-layer, fault-injection framework that combines dynamic-binary instrumentation with machine learning-guided dynamic-timing analysis. ARETE enables accurate fault-injection into any application by estimating the location of the injecting errors via dynamic-timing analysis. To accelerate fault-injection, we develop a novel, data-aware, machine learning-based mechanism that dynamically pre-selects the error-prone instructions and limits the application of the costly dynamic-timing analysis only to them. To evaluate ARETE's accuracy, our fully automated toolflow is configured to support fault-injection based on detailed post-layout gate-level simulations as well as via existing workload-agnostic error models. Our results for various workloads, including an autonomous-driving library, show that the location and time of injected errors performed by ARETE, is 89.9% consistent with fault-injection based on full gate-level simulation. On average, ARETE executes 84.6x faster than gate-level simulation and at a cost of 3.4% loss in the program output quality estimation. When compared to the existing statistical fault-injection tools that are based on workload-agnostic error models, ARETE improves the accuracy of fault-injection rate and output quality estimation by 143.9% and 40.4% on average, respectively.

97 MATHEMATICS AND COMPUTING↗

Progress toward a universal biomedical data translator

Clinical, biomedical, and translational science has reached an inflection point in the breadth and diversity of available data and the potential impact of such data to improve human health and well-being. However, the data are often siloed, disorganized, and not broadly accessible due to discipline-specific differences in terminology and representation. To address these challenges, the Biomedical Data Translator Consortium has developed and tested a pilot knowledge graph-based “Translator” system capable of integrating existing biomedical data sets and “translating” those data into insights intended to augment human reasoning and accelerate translational science. Having demonstrated feasibility of the Translator system, the Translator program has since moved into development, and the Translator Consortium has made significant progress in the research, design, and implementation of an operational system. Herein, we describe the current system’s architecture, performance, and quality of results. We apply Translator to several real-world use cases developed in collaboration with subject-matter experts. Finally, we discuss the scientific and technical features of Translator and compare those features to other state-of-the-art, biomedical graph-based question-answering systems.

60 APPLIED LIFE SCIENCES↗

Open Energy Data Initiative (OpenEDI) - Open Data Access Tools (OEDI-ODAT) [SWR 20-57]

Open Energy Data Initiative (OpenEDI): Advancing Analytics and Research Innovation through Improved Data Access. The Open Energy Data Initiative (OEDI) aims to improve and automate access of high-value energy data sets across the U.S. Department of Energy’s (DOE’s) programs, offices, and national laboratories. Sponsored by the DOE, this platform is being implemented by the National Renewable Energy Laboratory (NREL) to make data actionable and discoverable by researchers and industry to accelerate analysis and advance innovation. Partners at other national laboratories will help utilize the platform for analysis, can be directly involved in determining requirements, and will be resources for providing new datasets that can be shared with the public to expand innovation.

Rager, David↗

Metagenome-assembled genomes from Wind River Basin floodplain sediments Riverton, Wyoming site (August 2015)

Microorganisms play a key role in cycling nutrients and contaminants in the terrestrial environment depending on their genetic potential. Here we present metagenome-assembled genomes (MAGs) for the bacterial and archaeal community in floodplain sediment samples taken August 29, 2015 at a location (KB1) close to DOE Legacy Management well 855 at the Riverton, Wyoming floodplain site in the Wind River Basin (WRB). The groundwater at this site exhibits persistent U, Mo, and sulfate plumes and is one of the field sites in focus for the SLAC Groundwater Quality SFA program. Sediment samples from a deep soil pit were collected from 0 to 234 cm depth below surface at discrete depths every ~10-20 cm for microbial analyses. 13 metagenomes were sequenced through JGI and can be found under Gold sequencing project: Gs0131241. Metagenomes were assembled, binned, and refined using metawrap to generate MAGs (>50% complete and < 10% contamination based on checkM scores).This dataset includes a zip file of 2216 MAG fasta files and a csv file with quality, taxonomic classification (GTDB RS220), and metagenome accessions for MAGs. This dataset also includes a file-level metadata (flmd.csv) file that lists each file contained in the dataset with associated metadata and a data dictionary (dd.csv) file that contains column/row headers used throughout the files along with a definition, units, and data type

54 ENVIRONMENTAL SCIENCES↗

Metagenome-assembled genomes from Wind River Basin floodplain sediments Riverton, Wyoming site (May to September 2017)

Microorganisms play a key role in cycling nutrients and contaminants in the terrestrial environment depending on their genetic potential. Here we present metagenome-assembled genomes (MAGs) for the bacterial and archaeal community in floodplain sediment samples taken roughly every month in the period May 18 to September 13 in 2017 at a location (Pit2) close to DOE Legacy Management well 855 at the Riverton, Wyoming floodplain site in the Wind River Basin (WRB). The groundwater at this site exhibits persistent U, Mo, and sulfate plumes and is one of the field sites in focus for the SLAC Groundwater Quality SFA program. Cores were taken with a hand-auger and separated into 5-20 cm segments based on soil horizonation down to 150 cm depth below surface. Each segment was subsampled for microbial analyses. Corresponding 16S rRNA gene amplicon data is available at the NCBI Single Read Archive (SRA) Database BioProject ID PRJNA626616, and soil geochemistry data at doi:10.15485/1631972. 40 metagenomes were sequenced through JGI and can be found under Gold sequencing project: Gs0142591. Metagenomes were assembled, binned, and refined using metawrap to generate MAGs (>50% complete and < 10% contamination based on checkM scores). This dataset includes a zip file of 6993 MAG fasta files and a csv file with quality, taxonomic classification (GTDB RS220), and metagenome accessions for MAGs generated from the Wind River Basin (WRB). This dataset also includes a file-level metadata (flmd.csv) file that lists each file contained in the dataset with associated metadata and a data dictionary (dd.csv) file that contains column/row headers used throughout the files along with a definition, units, and data type.

54 ENVIRONMENTAL SCIENCES↗

Experimental overview about LANL contributions to the Electron-Ion Collider

This report is a request from the LANL team to design and build the Forward Silicon Tracker (FST) for the Electron-Ion Collider (EIC). The report highlights past accomplishments of LANL and seeks DOE support for continued work for the EIC, including silicon detector R&D; silicon tracker construction and operation; heavy flavor physics development and data analysis.

43 PARTICLE ACCELERATORS↗

The equilibrium and stability of the gaseous component of the galaxy, 1

The distribution of gas satisfying hydrostatic and Poisson conditions with distance above the galactic plane is derived and compared with Schmidt's observations of the gas density, rho sub g (z). Equipartition magnetic and cosmic ray (Pc-r) components are assumed. The gas density is calculated for two limiting cases: (1) the total mass density at the galactic plane is equal to the sum of the observed gas and star densities in the solar neighborhood, and (2) Oort's data on the z component of the galactic gravitational acceleration are used. The rms z turbulent gas velocity dispersion is found. An expression is derived for the half-thickness of the equilibrium disk of galactic gas. Using the Innanen galactic mass model, the half-thickness is computed as a function of distance from the galactic center over the range 4kpc or = R or = 14kpc and compared to the observations of McGee and Milton. The observed increase in half-thickness at distances beyond the solar distance is reproduced theoretically. A galactic mass model is derived, using the observed layer half-width and constant value for Q.

Kellman, S. A.↗

Heat transfer to the transpired turbulent boundary layer.

This paper contains a summarization of five years work on an investigation on heat transfer to the transpired turbulent boundary layer. Experimental results are presented for friction coefficient and Stanton number over a wide range of blowing and suction for the case of constant free-stream velocity, holding certain blowing parameters constant. The problem of the accelerated turbulent boundary layer with transpiration is considered, experimental data are presented and discussed, and theoretical models for solution of the momentum equation under these conditions are presented. Data on turbulent Prandtl number are presented so that solutions to the energy equation may be obtained. Some examples of boundary layer heat transfer and friction coefficient predictions are presented using one of the models discussed, employing a finite difference solution method.

Kays, W. M.↗

Validation of a Flexible Aircraft Take-Off and Landing Analysis (FATOLA)

Modifications to improve the analytical simulation capabilities of a multi-degree-of-freedom flexible aircraft take-off and landing analysis (FATOLA) computer program are discussed. The FATOLA program was used to simulate the landing behavior of a stiff body X-24B reentry research vehicle and of a flexible body supersonic cruise YF-12A research airplane. The analytical results were compared with flight test data, and correlations of vehicle motions, attitudes, forces, and accelerations during the landing impact and rollout were good. For the YF-12A airplane, airframe flexibility was found to be important for nose gear loading. Based upon the correlation study presented, the versatility and validity of the FATOLA program for the study of landing dynamics of aircraft are confirmed.

Carden, H. D.↗