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DOE OSTI2023

A conformational equilibrium in the nitrogenase MoFe protein with an α-V70I amino acid substitution illuminates the mechanism of H 2 formation

Study of α-V70I-substituted nitrogenase MoFe protein identified Fe6 of FeMo-cofactor (Fe 7 S 9 MoC-homocitrate) as a critical N 2 binding/reduction site. Freeze-trapping this enzyme during Ar turnover captured the key catalytic intermediate in high occupancy, denoted E 4 (4H), which has accumulated 4[e — /H + ] as two bridging hydrides, Fe2–H–Fe6 and Fe3–H–Fe7, and protons bound to two sulfurs. E 4 (4H) is poised to bind/reduce N 2 as driven by mechanistically-coupled H 2 reductive-elimination of the hydrides. This process must compete with ongoing hydride protonation (HP), which releases H 2 as the enzyme relaxes to state E 2 (2H), containing 2[e — /H + ] as a hydride and sulfur-bound proton; accumulation of E 4 (4H) in α-V70I is enhanced by HP suppression. EPR and 95 Mo ENDOR spectroscopies now show that resting-state α-V70I enzyme exists in two conformational states, both in solution and as crystallized, one with wild type (WT)-like FeMo-co and one with perturbed FeMo-co. These reflect two conformations of the Ile residue, as visualized in a reanalysis of the X-ray diffraction data of α-V70I and confirmed by computations. EPR measurements show delivery of 2[e — /H + ] to the E 0 state of the WT MoFe protein and to both α-V70I conformations generating E 2 (2H) that contains the Fe3–H–Fe7 bridging hydride; accumulation of another 2[e — /H + ] generates E 4 (4H) with Fe2–H–Fe6 as the second hydride. E 4 (4H) in WT enzyme and a minority α-V70I E 4 (4H) conformation as visualized by QM/MM computations relax to resting-state through two HP steps that reverse the formation process: HP of Fe2–H–Fe6 followed by slower HP of Fe3–H–Fe7, which leads to transient accumulation of E 2 (2H) containing Fe3–H–Fe7. In the dominant α-V70I E 4 (4H) conformation, HP of Fe2–H–Fe6 is passively suppressed by the positioning of the Ile sidechain; slow HP of Fe3–H–Fe7 occurs first and the resulting E 2 (2H) contains Fe2–H–Fe6. Importantly, it is this HP suppression in E 4 (4H) that enables α-V70I MoFe to accumulate E 4 (4H) in high occupancy. In addition, HP suppression in α-V70I E 4 (4H) kinetically unmasks hydride reductive-elimination without N 2 -binding, a process that is precluded in WT enzyme.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

DOE OSTI2026

Machine-Protection System for the PIP-II Linear Accelerator: Architecture and Data Processing Schemes

PIP-II at Fermilab features a brand-new, 800 MeV leading-edge Linear Accelerator (Linac) that will enable the Fermilab complex to deliver more than a megawatt of beam power to the Long Base-line Neutrino Facility (LBNF), requiring a robust Machine Protection System (MPS) to prevent beam-induced damage to delicate cryomodules and vacuum components. Signals in various accelerator components, in both analog and digital format, are collected and processed to assest the operating conditions of the accelerator. In the situation a potential damage is foreseen, the beam permit signal will be drop. A critical element of this system is the fast Analog Machine Protection System, a high-bandwidth platform designed for real-time beam loss monitoring. The system utilizes a modular, FPGA-based architecture to digitize signals from beam-sensing devices, such as AC Current Transformers (ACCTs), non-invasive Ring Pickups (RPUs) and beam scrapers. To eliminate both high frequency as well as 60 Hz noise that might be picked up in the industrial environment, data processing schemes beyond regular digital filtering are planned and implemented.

Wu, Jinyuan [Fermilab] (ORCID:0000000344329521)↗

DOE OSTI2023

mzapy : An Open-Source Python Library Enabling Efficient Extraction and Processing of Ion Mobility Spectrometry-Mass Spectrometry Data in the MZA File Format

We have recently reported MZA, a new and simple mass spectrometry data structure based on the broadly supported HDF5 format and created to facilitate software development. While this format is inherently supportive of application development, the availability of a core library with standard mass spectrometry utilities greatly facilitates fast software development. Here, we present a Python library, mzapy, for efficient extraction and processing of mass spectrometry data in the MZA format. In addition to raw data extraction, mzapy contains supporting utilities enabling tasks including calibration, signal processing, peak finding, and generating plots. Being implemented in pure Python with minimal and largely standardized dependencies makes mzapy uniquely suited to application development in the multi-omics domain. The free and open source mzapy is built with extensibility in mind, and future development will support cloud computing and artificial intelligence/machine learning applications. The software source code is freely available at https://github.com/PNNL-m-q/mzapy.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

NASA NTRS1979

The asteroids - Accretion, differentiation, fragmentation, and irradiation

Various types of meteorites have experienced processes of condensation, accretion, metamorphism, differentiation, brecciation, irradiation and fragmentation. A typical view of meteorite formation has been that the processes following accretion take place in a few asteroidal-sized (approximately 100 km) objects. Discovery of decay products of now extinct Al-26 and Pd-107 in meteorites, discovery of isotopic heterogeneity among meteorite types, re-analysis of meteorite cooling rates, and continuing study of meteoritic compositions have led some meteoriticists to conclude that meteorites obtained their chemical, isotopic, and some textural characteristics in objects initially less than 10 km in diameter. Such a scenario, which is described in this paper, raises the possibility that some of these small planetesimals may have been 'condensation nuclei' for the formation of comets as well as the precursors of asteroids.

Wilkening, L. L.↗

DOE OSTI2024

Formation of field-induced breakdown precursors on metallic electrode surfaces

Understanding the underlying factors responsible for higher-than-anticipated local field enhancements required to trigger vacuum breakdown on pristine metal surfaces is crucial for the development of devices capable of withstanding intense operational fields. In this study, we investigate the behavior of nominally flat copper electrode surfaces exposed to electric fields of hundreds of MV/m. Our novel approach considers curvature-driven diffusion processes to elucidate the formation of sharp breakdown precursors. To do so, we develop a mesoscale finite element model that accounts for driving forces arising from both electrostatic and surface-tension-induced contributions to the free energy. Our findings reveal a dual influence: surface tension tends to mitigate local curvature, while the electric field drives mass transport toward regions of high local field density. This phenomenon can trigger the growth of sharper protrusions, ultimately leading to a rapid enhancement of local fields and, consequently, to a runaway growth instability. We delineate supercritical and subcritical regimes across a range of initial surface roughness. Our numerical results are in qualitative agreement with experimentally reported data, indicating the potential practical relevance of field-driven diffusion in the formation of breakdown precursors.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

NASA NTRS1990

Mass and energy flow in prominences

Mass and energy flow in quiescent prominences is considered based on the hypothesis that active region prominences have a different structure and thus different mass and energy flow characteristics. Several important physical parameters have been plotted using the computational model, representing the evolutionary process after the prominence formation. The temperature, velocity, conductive flux, and enthalpy flux are plotted against distance from the highest point in the loop to the coolest part of the prominence. It is shown that the maximum velocity is only about 5 km/s. The model calculations indicate that the transition region of prominences is dominated by complex processes. It is necessary to take into account mass flow at temperatures below 200,000 K, and both mass flow and optical depth effects in hydrogen at temperatures below 30,000 K. Both of these effects lead to a less steep temperature gradient through the prominence corona interface than can be obtained from the conduction alone.

Poland, Arthur I.↗

NASA NTRS1984

Studies on the hot corrosion of a nickel-base superalloy, Udimet 700

The hot corrosion of a nickel-base superalloy, Udimet 700, was studied in the temperature range of 884 to 965 C and with different amounts of Na2SO4. Two different modes of degradation were identified: (1) formation of Na2MoO4 - MoO3 melt and fluxing by this melt, and (2) formation of large interconnected sulfides. The dissolution of Cr2O3, TiO2 in the Na2SO4 melt does not play a significant role in the overall corrosion process. The conditions for the formation of massive interconnected sulfides were identified and a mechanism of degradation due to sulfide formation is described. The formation of Ns2MoO4 - MoO3 melt requires an induction period and various physiochemical processes during the induction period were identified. The factors affecting the length of the induction period were also examined. The melt penetration through the oxide appears to be the prime mode of degradation whether the degradation is due to the formation of sulfides or the formation of the Na2MoO4 - MoO3 melt.

Misra, A. K.↗

NASA NTRS1984

The size of clusters in a neutrino-dominated universe

Quite soon after the first collapse of structure, almost half the matter in a neutrino-dominated universe is expected to reside in clusters. The masses and binding energies of these neutrino clusters are too large for them to be identified with observed galaxy clusters. Even if such objects were able to suppress all galaxy formation, their X-ray emission would, however, make them highly visible if more than 2.5 percent of their mass was in ordinary matter. Such a low baryon density leads to insuffient cooling for galaxies to form in pancakes. A neutrino-dominated universe appears to conflict with observation irrespective of the details of the processes which govern galaxy formation.

White, S. D. M.↗

NASA NTRS1997

Description and Analysis of Core Samples: The Lunar Experience

Although no samples yet have been returned from a comet, extensive experience from sampling another solar system body, the Moon, does exist. While, in overall structure, composition, and physical properties the Moon bears little resemblance to what is expected for a comet, sampling the Moon has provided some basic lessons in how to do things which may be equally applicable to cometary samples. In particular, an extensive series of core samples has been taken on the Moon, and coring is the best way to sample a comet in three dimensions. Data from cores taken at 24 Apollo collection stations and 3 Luna sites have been used to provide insight into the evolution of the lunar regolith. It is now well understood that this regolith is very complex and reflects gardening (stirring of grains by micrometeorites), erosion (from impacts and solar wind sputtering), maturation (exposure on the bare lunar surface to solar winds ions and micrometeorite impacts) and comminution of coarse grains into finer grains, blanket deposition of coarse-grained layers, and other processes. All of these processes have been documented in cores. While a cometary regolith should not be expected to parallel in detail the lunar regolith, it is possible that the upper part of a cometary regolith may include textural, mineralogical, and chemical features which reflect the original accretion of the comet, including a form of gardening. Differences in relative velocities and gravitational attraction no doubt made this accretionary gardening qualitatively much different than the lunar version. Furthermore, at least some comets, depending on their orbits, have been subjected to impacts of the uppermost surface by small projectiles at some time in their history. Consequently, a more recent post-accretional gardening may have occurred. Finally, for comets which approach the sun, large scale erosion may have occurred driven by gas loss. The uppermost material of these comets may reflect some of the features of this erosional process, such as crust formation, and variations with depth might be expected. Overall, the upper few meters of a comet may be as complex in their own way as the upper few meters of the lunar regolith have proven to be, and by analogy, detailed studies of core samples containing this depth information will be needed to understand these processes and the details of the accretional history and the subsequent alteration history of comets.

McKay, David S.↗

DOE OSTI2022

Automated Process Planning for Embossing and Functionally Grading Materials via Site-Specific Control in Large-Format Metal-Based Additive Manufacturing

The potential for site-specific, process-parameter control is an attribute of additive manufacturing (AM) that makes it highly attractive as a manufacturing process. The research interest in the functionally grading material properties of numerous AM processes has been high for years. However, one of the issues that slows developmental progress in this area is process planning. It is not uncommon for manual programming methods and bespoke solutions to be utilized for site-specific control efforts. This article presents the development of slicing software that contains a fully automated process planning approach for enabling through-thickness, process-parameter control for a range of AM processes. The technique includes the use of parent and child geometries for controlling the locations of site-specific parameters, which are overlayed onto unmodified toolpaths, i.e., a vector-based planning approach is used in which additional information, such as melt pool size for large-scale metal AM processes, is assigned to the vectors. This technique has the potential for macro- and micro-structural modifications to printed objects. A proof-of-principle experiment is highlighted in which this technique was used to generate dynamic bead geometries that were deposited to induce a novel surface embossing effect, and additional software examples are presented that highlight software support for more complex objects.

36 MATERIALS SCIENCE↗

NASA NTRS2001

The X-Ray Spectrometer for Mercury MESSENGER

Mercury is the closest planet to the Sun and because it is so close, it is difficult to study from Earth-based observatories. Its proximity to the Sun has also limited the number of spacecraft to visit this tiny planet to just one, Mariner 10, which flew by Mercury twice in 1974 and once in 1975. Mariner 10 provided a wealth of new information about Mercury, yet much still remains unknown about Mercury's geologic history and the processes that led to its formation. The origin of Mercury's metal-rich composition is just one area of investigation awaiting more and improved data to sort between competing hypotheses. Mercury plays an important role in comparative planetology, and many of the processes that were important during its formation are relevant to the Earth's early history. MESSENGER (Mercury Surface, Space Environment, Geochemistry, and Ranging) is a Discovery mission that has been designed to fly by and orbit Mercury. It will launch in March 2004, flyby Mercury in 2007 and 2008 and enter an elliptical orbit in April 2009. During the one-year orbital phase, a suite of instruments on board the MESSENGER spacecraft will study the exosphere, magnetosphere, surface, and interior of Mercury. One of these instruments will be an X-Ray Spectrometer (XRS) that will measure surface elemental abundances. Remote X-ray spectroscopy has been accomplished before on the Apollo 15 and 16 missions, and more recently on NEAR Shoemaker. The MESSENGER XRS will measure characteristic X-ray emissions induced in the surface of Mercury by the incident solar flux. The Ka lines for the elements Mg, Al, Si, S, Ca, Ti, and Fe will be detected with spatial resolution on the order of 40 km when counting statistics are not a limiting factor. These measurements can be used to obtain quantitative information on elemental composition.

Starr, R. D.↗

DOE OSTI2025

Reaction Mechanism of the Synthesis of a Disordered Rock Salt Cathode Material

Li-rich disordered rock salt (DRX) materials have recently emerged as a class of promising cathode materials for cobalt- and nickel-free Li-ion batteries that can achieve a high energy density and high electrochemical storage capacity. Here, the synthesis conditions of DRX were found to have a significant impact on the electrochemical performance of the final product formed and hence need to be carefully controlled. To date, the formation pathway of DRX materials has remained largely unexplored. In this work, the phase evolution of a DRX material, Li 1.1 Mn 0.8 Ti 0.1 O 1.9 F 0.1 (LMTF1811), during solid-state synthesis, was monitored using in situ synchrotron X-ray diffraction (sXRD). We have observed several crystalline intermediates formed during the synthesis process before the full formation of DRX. Ex situ X- ray absorption spectroscopy (XAS) was used to assess the local structure and charge states of the transition metals. F K-edge XAS collected from the final product LMTF1811 shows that the degree of F incorporation into the DRX phase is low.

Diffraction↗

DOE OSTI2026

Biomass Demineralization: A Critical Need for Future Biorefineries

Biomass contains up to 14 essential elements that serve as nutrients for plant growth and development, including photosynthesis and enzyme functionalities. These elements in different chemical forms (e.g., minerals) constitute the inorganic fraction of biomass and can cause operational issues in thermal and biochemical biomass conversion technologies. In biomass gasification and pyrolysis processes, for instance, inorganics can cause fouling, tar formation, and corrosion. In catalytic and biochemical processes, inorganics can poison catalysts, alter biochemical pathways, and modify product yields and selectivity. This review provides an overview of the inorganic content in biomass feedstocks, the critical role inorganics play in plant biochemistry, the effect that inorganics have in various thermochemical and biochemical biomass conversion technologies, and different approaches to remove them from biomass. We provide recommendations for future research, focusing on developing technologies to effectively remove inorganics from biomass, using the inorganics to improve soil quality and for alternative applications, and designing biorefineries to convert demineralized biomass obtained from diverse sources.

09 - BIOMASS FUELS↗

DOE OSTI2022

Disk transport rates from Ti isotopic signatures of refractory inclusions

Abstract The early solar system was a dynamic period during which the formation of early solids set into motion the process of planet building. Although both astrophysical observations and theoretical modeling demonstrate the presence of widespread transport of material, we lack concrete quantitative constraints on timings, distances, and mechanisms thereof. To trace these transport processes, one needs objects of known early formation times and these objects would need to be distributed throughout parent bodies with known accretion times and distances. Generally, these criteria are met by “regular” (i.e., non–fractionated and unidentified nuclear and excluding hibonite‐rich) Ca‐Al‐rich inclusions (CAIs) as these objects formed very early and close to the young Sun and contain distinctive nucleosynthetic isotope anomalies that permit provenance tracing. However, nucleosynthetic isotopic signatures of such refractory inclusions have so far primarily been analyzed in chondritic meteorites that formed within ~4 AU from the Sun. Here, we investigate Ti isotopic signatures of four refractory inclusions from the ungrouped carbonaceous chondrite WIS 91600 that was previously suggested to have formed beyond ~10 AU from the Sun. We show that these inclusions exhibit correlated excesses in 50 Ti and 46 Ti and lack large Ti isotopic anomalies that would otherwise be indicative of more enigmatic refractory materials with unknown formation ages. Instead, these isotope systematics suggest the inclusions to be genetically related to regular CAIs commonly found in other chondrites that have a broadly known formation region and age. Collectively, this implies that a common population of CAIs was distributed over the inner ~10 AU within ~3.5 Myr, yielding an average (minimum) speed for the transport of millimeter‐scale material in the early solar system of ~1 cm s −1 .

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

DOE OSTI2022

Shallow Cumulus Properties as Captured by Adiabatic Fraction in High-Resolution LES Simulations

Abstract Shallow convective clouds are important players in Earth’s energy budget and hydrological cycle, and are abundant in the tropical and subtropical belts. They greatly contribute to the uncertainty in climate predictions due to their unresolved, complex processes that include coupling between the dynamics and microphysics. Analysis of cloud structure can be simplified by considering cloud motions as a combination of moist adiabatic motions like adiabatic updrafts and turbulent motions leading to deviation from adiabaticity. In this work, we study the sizes and occurrence of adiabatic regions in shallow cumulus clouds during their growth and mature stages, and use the adiabatic fraction (AF) as a continuous metric to describe cloud processes and properties from the core to the edge. To do so, we simulate isolated trade wind cumulus clouds of different sizes using the System of Atmospheric Modeling (SAM) model in high resolution (10 m) with the Hebrew University spectral bin microphysics (SBM). The fine features in the clouds’ dynamics and microphysics, including small near-adiabatic volumes and a thin transition zone at the edge of the cloud (∼20–40 m in width), are captured. The AF is shown to be an efficient measure for analyzing cloud properties and key processes determining the droplet-size distribution formation and shape during the cloud evolution. Physical processes governing the properties of droplet size distributions at different cloud regions (e.g., core, edge) are analyzed in relation to AF. Significance Statement 1) This study investigates the evolution of cumulus clouds (Cu) using a 10-m-resolution LES model with spectral bin microphysics. 2) The study improves the understanding of the mutual effects of adiabatic updrafts and lateral entrainment and mixing. 3) The study demonstrates the existence of an adiabatic core in nonprecipitating Cu. 4) Shapes of the droplet size distributions are closely related to the adiabatic fraction values. 5) Utilization of high resolution reveals the existence of physically significant small features in the cloud structure, such as a narrow cloud interface zone and small adiabatic volumes.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2024

Additive Manufacturing for Large Displacement Unmanned Underwater Vehicles (LDUUVs)

Oak Ridge National Laboratory partnered with Anduril Industries to develop the process for adapting large format additive manufacturing for the production of underwater vehicles. This research started by defining and selecting a polymer for the vehicle panels. Coatings were tested at 9000PSI to ensure proper bonding to the 3D printed panels, then tensile tested to understand the mechanical properties. A vehicle panel fairing set was design optimized for the 3D printing process and then 3D printed. Additional work optimized coatings and tested additional reinforcements methods such as fiber weave and z-casting with fiber rods and resin. Finally, a full vehicle was constructed and successfully tested in open water by Anduril.

36 MATERIALS SCIENCE↗

NASA NTRS1975

Lunar Science Conference, 6th, Houston, Tex., March 17-21, 1975, Proceedings. Volume 2 - Chemical and isotopic studies

The chemical compositions of lunar rocks and soils are examined, taking into account sulfur abundances and distributions in mare basalts and their source magmas, lithophile trace and major elements in Apollo 16 and 17 lunar samples, the role of vaporization processes in lunar rock formation, chemical studies of the lunar regolith with emphasis on zirconium and hafnium, a model for the lunar anorthositic gabbro, and trace-element chemistry and reducing capacity of size fractions from the Apollo 16 regolith. Other topics considered are related to lunar chronology, volatile meteoritic elements, isotopic studies, light element geochemistry, and agglutinates and regolith processes. Attention is given to meteoritic material in four terrestrial meteorite craters, the state of meteoritic material on the moon, volatile elements in Allende inclusions, oxygen isotope fractionation in Apollo 17 rocks, cosmogenic isotope production in Apollo deep-core samples, and the effects of exposure conditions on cosmic-ray records in lunar rocks.

Merrill, R. B.↗

NASA NTRS1990

Containerless synthesis of interesting glasses

One aspect of containerless glass experimentation was thoroughly examined: glass forming ability. It is argued that although containerless processing will abet glass formation, other ground-based methods can do the job better. However, these methods have limitations, such as sample dimensions and concomitant ability to make property measurements. Most importantly, perhaps, is the observation that glass properties are a function of preparation procedure. Thus, it seems as though there still is an argument for use of containerless processing for glass forming.

Weinberg, Michael C.↗