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DOE OSTI2016

Trigger Detection for Adaptive Scientific Workflows Using Percentile Sampling

The increasing complexity of both scientific simulations and high-performance computing system architectures are driving the need for adaptive workflows, in which the composition and execution of computational and data manipulation steps dynamically depend on the evolutionary state of the simulation itself. Consider, for example, the frequency of data storage. Critical phases of the simulation should be captured with high frequency and with high fidelity for postanalysis; however, we cannot afford to retain the same frequency for the full simulation due to the high cost of data movement. We can instead look for triggers, indicators that the simulation will be entering a critical phase, and adapt the workflow accordingly. In this paper, we present a methodology for detecting triggers and demonstrate its use in the context of direct numerical simulations of turbulent combustion using S3D. We show that chemical explosive mode analysis (CEMA) can be used to devise a noise-tolerant indicator for rapid increase in heat release. However, exhaustive computation of CEMA values dominates the total simulation, and thus is prohibitively expensive. To overcome this computational bottleneck, we propose a quantile sampling approach. Our sampling-based algorithm comes with provable error/confidence bounds, as a function of the number of samples. Most importantly, the number of samples is independent of the problem size, and thus our proposed sampling algorithm offers perfect scalability. Our experiments on homogeneous charge compression ignition and reactivity controlled compression ignition simulations show that the proposed method can detect rapid increases in heat release, and its computational overhead is negligible. Our results will be used to make dynamic workflow decisions regarding data storage and mesh resolution in future combustion simulations.

97 MATHEMATICS AND COMPUTING↗

DOE OSTI2018

Comparative Study of Finite Element Methods Using the Time-Accuracy-Size(TAS) Spectrum Analysis

We present a performance analysis appropriate for comparing algorithms using different numerical discretizations. By taking into account the total time-to-solution, numerical accuracy with respect to an error norm, and the computation rate, a cost-benefit analysis can be performed to determine which algorithm and discretization are particularly suited for an application. This work extends the performance spectrum model in for interpretation of hardware and algorithmic tradeoffs in numerical PDE simulation. As a proof-of-concept, popular finite element software packages are used to illustrate this analysis for Poisson’s equation.

97 MATHEMATICS AND COMPUTING↗

DOE OSTI2023

Active Learning Framework

Machine learning (ML) of interatomic potentials show great promise to accelerate scientific simulation, e.g., by emulating expensive computations at a high accuracy but much reduced computational cost. Training datasets are calculated from computationally expensive ab initio quantum mechanics methods, density functional theory (DFT). Trained on this data, an ML model can be very successful in predicting energy and forces for new atomic configurations. A critical factor is the quality and diversity of the training dataset. Thus, a highly automated approach to dataset construction based on active learning framework is designed suitable for material physics. The active learning scheme begins with fully randomized atomic configurations. Then, many Molecular Dynamics (MD) trajectories are simulated using current ML potentials, where each MD trajectory is initialized to a random disordered configuration. The temperature is varied in order to diversify the sampled configuration during these simulations. The variance of predictions for eight neural networks within an ensemble is analyzed to determine whether the model is operating as expected. This helps in determining whether collecting more data would be helpful to the model by checking the ensemble variance is greater than the threshold. In this case, the MD trajectory is terminated and the final atomic configuration is placed on a queue (SQL database) for DFT calculations and added to training dataset. Periodically, ML model is retrained to the updated training model. This Active Learning loop is iterated until the cost of MD simulations becomes prohibitively expensive. The MD simulations will hopefully be sufficiently robust to support nucleation after many active learning iterations. In this sense, active learning scheme must automatically discover the important low energy and nonequilibrium physics.

Nebgen, Benjamin↗

DOE OSTI2025

CFDverify

Estimating the discretization error of computational fluid dynamics (CFD) or other scientific codes as part of solution verification is often a non-trivial part of the analysis process. Methods can be complicated and may include assumptions/qualifications that need to be checked during analysis. CFD analysts, therefore, are likely to make errors when trying to conduct this necessary analysis on their own in not knowing about the best method for their problem, not correctly implementing a method, or in not have diagnostic tools to determine if the method was correctly applied.

Weinmeister, Justin [Oak Ridge National Laboratory↗

DOE OSTI2025

An Early Investigation of the HHL Quantum Linear Solver for Scientific Applications

In this paper, we explore using the Harrow–Hassidim–Lloyd (HHL) algorithm to address scientific and engineering problems through quantum computing, utilizing the NWQSim simulation package on a high-performance computing platform. Focusing on domains such as power-grid management and climate projection, we demonstrate the correlations of the accuracy of quantum phase estimation, along with various properties of coefficient matrices, on the final solution and quantum resource cost in iterative and non-iterative numerical methods such as the Newton–Raphson method and finite difference method, as well as their impacts on quantum error correction costs using the Microsoft Azure Quantum resource estimator. We summarize the exponential resource cost from quantum phase estimation before and after quantum error correction and illustrate a potential way to reduce the demands on physical qubits. This work lays down a preliminary step for future investigations, urging a closer examination of quantum algorithms’ scalability and efficiency in domain applications.

hybrid software for QC-HPC↗

NASA NTRS1972

Mass spectrometry.

Review of the current state of mass spectrometry, indicating its unique importance for advanced scientific research. Mass spectrometry applications in computer techniques, gas chromatography, ion cyclotron resonance, molecular fragmentation and ionization, and isotope labeling are covered. Details are given on mass spectrometry applications in bio-organic chemistry and biomedical research. As the subjects of these applications are indicated alkaloids, carbohydrates, lipids, terpenes, quinones, nucleic acid components, peptides, antibiotics, and human and animal metabolisms. Particular attention is given to the mass spectra of organo-inorganic compounds, inorganic mass spectrometry, surface phenomena such as secondary ion and electron emission, and elemental and isotope analysis. Further topics include mass spectrometry in organic geochemistry, applications in geochronology and cosmochemistry, and organic mass spectrometry.

Burlingame, A. L.↗

NASA NTRS1976

Addendum report to atmospheric science facility pallet-only mode space transportation system payload feasibility study, volume 3, revision A

The feasibility of accomplishing selected atmospheric science mission using a pallet-only mode was studied. Certain unresolved issues were identified. The first issue was that of assuring that the on-board computer facility was adequate to process scientific data, control subsystems such as instrument pointing, provide mission operational program capability, and accomplish display and control. The second issue evolved from an investigation of the availability of existing substitute instruments that could be used instead of the prime instrumentation where the development tests and schedules are incompatible with the realistic budgets and shuttle vehicle schedules. Some effort was expended on identifying candidate substitute instruments, and the performance, cost, and development schedule trade-offs found during that effort were significant enough to warrant a follow-on investigation. This addendum documents the results of that follow-on effort, as it applies to the Atmospheric Sciences Facility.

Source record↗

NASA NTRS1987

PISCES 2 users manual

PISCES 2 is a programming environment and set of extensions to Fortran 77 for parallel programming. It is intended to provide a basis for writing programs for scientific and engineering applications on parallel computers in a way that is relatively independent of the particular details of the underlying computer architecture. This user's manual provides a complete description of the PISCES 2 system as it is currently implemented on the 20 processor Flexible FLEX/32 at NASA Langley Research Center.

Pratt, Terrence W.↗

NASA NTRS1988

The role of specialized processors in the NAS program - Retrospective/prospective

The Numerical Aerodynamic Simulation (NAS) Program was initiated by NASA to establish a national resource for scientific research and engineering applications of computational fluid dynamics. This paper examines the changing views of the roles of general purpose and special purpose processors in this program in response to changes in technology as well as changes in perceived needs. The time period covered extends from more than 10 years ago, through the present, and concludes with some speculative concepts for the future roles of specialized processors in the advanced NAS system.

Levin, Eugene↗

NASA NTRS1991

A survey of parallel programming tools

This survey examines 39 parallel programming tools. Focus is placed on those tool capabilites needed for parallel scientific programming rather than for general computer science. The tools are classified with current and future needs of Numerical Aerodynamic Simulator (NAS) in mind: existing and anticipated NAS supercomputers and workstations; operating systems; programming languages; and applications. They are divided into four categories: suggested acquisitions, tools already brought in; tools worth tracking; and tools eliminated from further consideration at this time.

Cheng, Doreen Y.↗

NASA NTRS1989

Intelligent Network Management and Functional Cerebellum Synthesis

Transdisciplinary modeling of the cerebellum across histology, physiology, and network engineering provides preliminary results at three organization levels: input/output links to central nervous system networks; links between the six neuron populations in the cerebellum; and computation among the neurons of the populations. Older models probably underestimated the importance and role of climbing fiber input which seems to supply write as well as read signals, not just to Purkinje but also to basket and stellate neurons. The well-known mossy fiber-granule cell-Golgi cell system should also respond to inputs originating from climbing fibers. Corticonuclear microcomplexing might be aided by stellate and basket computation and associate processing. Technological and scientific implications of the proposed cerebellum model are discussed.

Loebner, Egon E.↗

NASA NTRS1992

Cost, capability, and risk for planetary operations

The three key factors for flight projects - cost, capability, and risk - are examined with respect to their interplay, the uplink process, cost drivers, and risk factors. Scientific objectives are translated into a computer program during the uplink process, and examples are given relating to the Voyager Interstellar Mission, Galileo, and the Comet Rendezvous Asteroid Flyby. The development of a multimission sequence system based on these uplinks is described with reference to specific subsystems such as the pointer and the sequence generator. Operational cost drivers include mission, flight-system, and ground-system complexity, uplink traffic, and work force. Operational risks are listed in terms of the mission operations, the environment, and the mission facilities. The uplink process can be analyzed in terms of software development, and spacecraft operability is shown to be an important factor from the initial stages of spacecraft development.

Mclaughlin, William I.↗

NASA NTRS1987

Flow physics

A discussion is presented on the coupling of computational analysis and experiment. It is believed that this coupling is critical in developing new aerodynamic insights. Additionally, new methods for analyzing and interpreting data are discussed. These methods need to be developed in small-scale research studies and then applied to large-scale technology programs. The specific objectives of this program are threefold: (1) provide definitive data sets for the assessment of numerical simulations to the Navier-Stokes equations; (2) incorporate advanced instrumentation to measure the spatial and temporal structure of fluid flows; and (3) develop true parallelism between computational and experimental research using the 'scientific workstation' concept. The discussion is presented in viewgraph form.

Davis, Sanford↗

NASA NTRS1992

Concurrent file operations in a high performance FORTRAN

Distributed memory multiprocessor systems can provide the computing power necessary for large scale scientific applications. A critical performance issue for a number of these applications is the efficient transfer of data to secondary storage. Recently several research groups have proposed FORTRAN language extensions for exploiting the data parallelism of such scientific codes on distributed memory architectures. However, few of these high performance FORTRAN's provide appropriate constructs for controlling the use of the parallel I/O capabilities of modern multiprocessing machines. In this paper, we propose constructs to specify I/O operations for distributed data structures in the context of Vienna Fortran. These operations can be used by the programmer to provide information which can help the compiler and runtime environment make the most efficient use of the I/O subsystem.

Brezany, Peter↗

NASA NTRS1994

Electronic access to ONREUR/ONRAISIA S and T reports

The Office of Naval Research maintains two foreign field offices in London, England and in Tokyo, Japan. These offices survey world-wide findings, trends and achievements in science and technology. These offices maintain liaison between U.S. Navy and foreign scientific research and development organizations conducting programs of naval interest. Expert personnel survey foreign scientific and technical activities, identify new directions and progress of potential interest, and report their findings. Report topics cover a broad range of basic scientific thrusts in mathematics, physics, chemistry, computer science, and oceanography, as well as advances in technologies such as electronics, materials, optics, and robotics. These unclassified reports will be made available via the Internet in 1995, replacing hard-copy publication.

Mccluskey, William↗

NASA NTRS1994

A Spacelab Expert System for Remote Engineering and Science

NASA's space science program is based on strictly pre-planned activities. This approach does not always result in the best science. We describe an existing computer system that enables space science to be conducted in a more reactive manner through advanced automation techniques that have recently been used in SLS-2 October 1993 space shuttle flight. Advanced computing techniques, usually developed in the field of Artificial Intelligence, allow large portions of the scientific investigator's knowledge to be "packaged" in a portable computer to present advice to the astronaut operator. We strongly believe that this technology has wide applicability to other forms of remote science/engineering. In this brief article, we present the technology of remote science/engineering assistance as implemented for the SLS-2 space shuttle flight. We begin with a logical overview of the system (paying particular attention to the implementation details relevant to the use of the embedded knowledge for system reasoning), then describe its use and success in space, and conclude with ideas about possible earth uses of the technology in the life and medical sciences.

Groleau, Nick↗

NASA NTRS2008

Fast Electromechanical Switches Based on Carbon Nanotubes

Electrostatically actuated nanoelectromechanical switches based on carbon nanotubes have been fabricated and tested in a continuing effort to develop high-speed switches for a variety of stationary and portable electronic equipment. As explained below, these devices offer advantages over electrostatically actuated microelectromechanical switches, which, heretofore, have represented the state of the art of rapid, highly miniaturized electromechanical switches. Potential applications for these devices include computer memories, cellular telephones, communication networks, scientific instrumentation, and general radiation-hard electronic equipment. A representative device of the present type includes a single-wall carbon nanotube suspended over a trench about 130 nm wide and 20 nm deep in an electrically insulating material. The ends of the carbon nanotube are connected to metal electrodes, denoted the source and drain electrodes. At bottom of the trench is another metal electrode, denoted the pull electrode (see figure). In the off or open switch state, no voltage is applied, and the nanotube remains out of contact with the pull electrode. When a sufficiently large electric potential (switching potential) is applied between the pull electrode and either or both of the source and drain electrodes, the resulting electrostatic attraction bends and stretches the nanotube into contact with the pull electrode, thereby putting the switch into the "on" or "closed" state, in which substantial current (typically as much as hundreds of nanoamperes) is conducted. Devices of this type for use in initial experiments were fabricated on a thermally oxidized Si wafer, onto which Nb was sputter-deposited for use as the pull-electrode layer. Nb was chosen because its refractory nature would enable it to withstand the chemical and thermal conditions to be subsequently imposed for growing carbon nanotubes. A 200- nm-thick layer of SiO2 was formed on top of the Nb layer by plasma-enhanced chemical vapor deposition. In the device regions, the SiO2 layer was patterned to thin it to the 20-nm trench depth. The trenches were then patterned by electron- beam lithography and formed by reactive- ion etching of the pattern through the 20-nm-thick SiO2 to the Nb layer.

Kaul, Anupama↗

NASA NTRS2011

Rapid Calculation of Spacecraft Trajectories Using Efficient Taylor Series Integration

A variable-order, variable-step Taylor series integration algorithm was implemented in NASA Glenn's SNAP (Spacecraft N-body Analysis Program) code. SNAP is a high-fidelity trajectory propagation program that can propagate the trajectory of a spacecraft about virtually any body in the solar system. The Taylor series algorithm's very high order accuracy and excellent stability properties lead to large reductions in computer time relative to the code's existing 8th order Runge-Kutta scheme. Head-to-head comparison on near-Earth, lunar, Mars, and Europa missions showed that Taylor series integration is 15.8 times faster than Runge- Kutta on average, and is more accurate. These speedups were obtained for calculations involving central body, other body, thrust, and drag forces. Similar speedups have been obtained for calculations that include J2 spherical harmonic for central body gravitation. The algorithm includes a step size selection method that directly calculates the step size and never requires a repeat step. High-order Taylor series integration algorithms have been shown to provide major reductions in computer time over conventional integration methods in numerous scientific applications. The objective here was to directly implement Taylor series integration in an existing trajectory analysis code and demonstrate that large reductions in computer time (order of magnitude) could be achieved while simultaneously maintaining high accuracy. This software greatly accelerates the calculation of spacecraft trajectories. At each time level, the spacecraft position, velocity, and mass are expanded in a high-order Taylor series whose coefficients are obtained through efficient differentiation arithmetic. This makes it possible to take very large time steps at minimal cost, resulting in large savings in computer time. The Taylor series algorithm is implemented primarily through three subroutines: (1) a driver routine that automatically introduces auxiliary variables and sets up initial conditions and integrates; (2) a routine that calculates system reduced derivatives using recurrence relations for quotients and products; and (3) a routine that determines the step size and sums the series. The order of accuracy used in a trajectory calculation is arbitrary and can be set by the user. The algorithm directly calculates the motion of other planetary bodies and does not require ephemeris files (except to start the calculation). The code also runs with Taylor series and Runge-Kutta used interchangeably for different phases of a mission.

Scott, James R.↗