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DOE OSTI2022

DNA Sequence-Based Identification of Fusarium : A Work in Progress

Accurate species-level identification of an etiological agent is crucial for disease diagnosis and management because knowing the agent’s identity connects it with what is known about its host range, geographic distribution, and toxin production potential. This is particularly true in publishing peer-reviewed disease reports, where imprecise and/or incorrect identifications weaken the public knowledge base. This can be a daunting task for phytopathologists and other applied biologists that need to identify Fusarium in particular, because published and ongoing multilocus molecular systematic studies have highlighted several confounding issues. Paramount among these are: (i) this agriculturally and clinically important genus is currently estimated to comprise more than 400 phylogenetically distinct species (i.e., phylospecies), with more than 80% of these discovered within the past 25 years; (ii) approximately one-third of the phylospecies have not been formally described; (iii) morphology alone is inadequate to distinguish most of these species from one another; and (iv) the current rapid discovery of novel fusaria from pathogen surveys and accompanying impact on the taxonomic landscape is expected to continue well into the foreseeable future. To address the critical need for accurate pathogen identification, our research groups are focused on populating two web-accessible databases (FUSARIUM-ID v.3.0 and the nonredundant National Center for Biotechnology Information nucleotide collection that includes GenBank) with portions of three phylogenetically informative genes (i.e., TEF1, RPB1, and RPB2) that resolve at or near the species level in every Fusarium species. The objectives of this Special Report, and its companion in this issue ( Torres-Cruz et al. 2022 ), are to provide a progress report on our efforts to populate these databases and to outline a set of best practices for DNA sequence-based identification of fusaria.

Plant Sciences↗

DOE OSTI2021

ShopperWorkerRatio

These data characterize spatial and temporal variation in the ratio between shoppers and workers in public places - points of interest - in the United States between 2019 and 2020. The underlying data on foot traffic to public places is collected by SafeGraph, a commercial data aggregator. We estimate the ratio of shoppers to workers based on recorded visit duration.These data may be useful for understanding how use of public spaces have changed during the Coronavirus pandemic, and more generally for understanding activity patterns in public.

29 ENERGY PLANNING, POLICY, AND ECONOMY↗

DOE OSTI2025

NeuralMie (v1.0): an aerosol optics emulator

The direct interactions of atmospheric aerosols with radiation significantly impact the Earth's climate and weather and are important to represent accurately in simulations of the atmosphere. This work introduces two contributions to enable a more accurate representation of aerosol optics in atmosphere models: (1) NeuralMie, a neural network Mie scattering emulator that can directly compute the bulk optical properties of a diverse range of aerosol populations and is appropriate for use in atmosphere simulations where aerosol optical properties are parameterized, and (2) TAMie, a fast Python-based Mie scattering code based on the Toon and Ackerman (1981) Mie scattering algorithm that can represent both homogeneous and coated particles. TAMie achieves speed and accuracy comparable to established Fortran Mie codes and is used to produce training data for NeuralMie. NeuralMie is highly flexible and can be used for a wide range of particle types, wavelengths, and mixing assumptions. It can represent core-shell scattering and, by directly estimating bulk optical properties, is more efficient than existing Mie code and Mie code emulators while incurring negligible error compared to existing aerosol optics parameterization schemes (0.08 % mean absolute percentage error).

54 ENVIRONMENTAL SCIENCES↗

NASA NTRS1993

Estimation of age of Dali-Ganis rifting and associated volcanic activity, Venus

This paper deals with the estimation of age for the Dali and Ganis Chasma rift zones and their associated volcanism based on photogeologic analysis of stratigraphic relations of rift-associated features with impact craters which have associated features indicative of their age. The features are radar-dark and parabolic, and they are believed to be mantles of debris derived from fallout of the craters' ejecta. They are thought to be among the youngest features on the Venusian surface, so their 'parent' craters must also be very young, evidently among the youngest 10 percent of Venus' crater population. Dali Chasma and Ganis Chasma are a part of a system of rift zones contained within eastern Aphrodite and Atla Regio which is a significant component of Venus tectonics. The rifts of this system are fracture belts which dissect typical Venusian plains with rare islands of tessera terrain. The rift zone system consists of several segments following each other (Diane, Dali, Ganis) and forming the major rift zone line, about 10,000 km long, which has junctions with several other rift zones, including Parga Chasma Rift. The junctions are usually locations of rift-associated volcanism in the form of volcanic edifices (Maat and Ozza Montes) or plain-forming flows flooding some areas within the rift zones and the adjacent plains.

Basilevsky, A. T.↗

NASA NTRS2014

3D-HST + CANDELS: the Evolution of the Galaxy Size-mass Distribution Since Z=3

Spectroscopic and photometric redshifts, stellar mass estimates, and rest-frame colors from the 3D-HST survey are combined with structural parameter measurements from CANDELS imaging to determine the galaxy size-mass distribution over the redshift (z) range 0 < z < 3. Separating early- and late-type galaxies on the basis of star-formation activity, we confirm that early-type galaxies are on average smaller than late-type galaxies at all redshifts, and find a significantly different rate of average size evolution at fixed galaxy mass, with fast evolution for the early-type population, effective radius is in proportion to (1 + z) (sup −1.48), and moderate evolution for the late-type population, effective radius is in proportion to (1 + z) (sup −0.75). The large sample size and dynamic range in both galaxy mass and redshift, in combination with the high fidelity of our measurements due to the extensive use of spectroscopic data, not only fortify previous results, but also enable us to probe beyond simple average galaxy size measurements. At all redshifts the slope of the size-mass relation is shallow, effective radius in proportion to mass of a black hole (sup 0.22), for late-type galaxies with stellar mass > 3 x 10 (sup 9) solar masses, and steep, effective radius in proportion to mass of a black hole (sup 0.75), for early-type galaxies with stellar mass > 2 x 10 (sup 10) solar masses. The intrinsic scatter is approximately or less than 0.2 decimal exponents for all galaxy types and redshifts. For late-type galaxies, the logarithmic size distribution is not symmetric, but skewed toward small sizes: at all redshifts and masses a tail of small late-type galaxies exists that overlaps in size with the early-type galaxy population. The number density of massive (approximately 10 (sup 11) solar masses), compact (effective radius less than 2 kiloparsecs) early-type galaxies increases from z = 3 to z = 1.5 − 2 and then strongly decreases at later cosmic times.

EVOLUTION↗

DOE OSTI2022

SDSS IV MaNGA - star-formation driven biconical outflows in face-on galaxies

ABSTRACT We find 132 face-on and low inclination galaxies with central star formation driven biconical gas outflows (FSFB) in the SDSS MaNGA (Mapping Nearby Galaxies at APO) survey. The FSFB galaxies show either double peaked or broadened emission line profiles at their centres. The peak and maximum outflow velocities are 58 and 212 km s−1, respectively. The gas velocity dispersion reveals a mild dependence on the central star formation surface density compatible with models of gas dispersion powered by the Jeans instability in gas clumps or by gas turbulence dissipation. We estimate the gas outflow rate and conclude that the central gas depletion time does not depend on galactic mass. In turn, the ratio of the gas outflow rate to the gas consumption rate by the star formation is low in massive galaxies and high in low mass objects, while the star formation is a more rapid process of the gas consumption. We compare properties of the FSFB galaxies with a control sample of 375 comparison galaxies and find that the FSFB objects have high central concentration of star formation and also younger central stellar population with respect to their periphery. We analysed the environment of the galaxies and identified nearby satellites and elements of low surface brightness structure. We see that many tidal-enhanced features that can be assigned to early and intermediate stages of galactic interaction are much more frequent in the FSFB galaxies with respect to the comparison sample. We conclude that the gas should be replenished via the accretion from small satellites.

Bizyaev, D. (ORCID:000000023601133X)↗

NASA NTRS1977

Distribution and flux of micrometeoroids

The mass distribution, flux, and distribution in space of the micrometeoroid complex at 1 AU are estimated on the basis of data from Apollo 17 rocks and recent calibrations of solar-flare track-production rates. It is found that the size frequency distribution of microcraters on lunar rocks suggests a bimodal mass distribution of micrometeoroids, but the precise form of the curve requires further definition, particularly insofar as the degree of depletion of particles producing craters 10 to 100 microns in diameter is concerned. Variations in slope with crater-diameter or particle-mass increments are shown to indicate that different processes affect one or more particle populations. Fluxes corresponding to varied lunar surface orientation and residence time are calculated, but no striking difference is observed between the flux of submicron-diameter particles with orbits in the plane of the ecliptic and fluxes of particles with orbits normal to the plane in the solar apex direction.

Morrison, D. A.↗

NASA NTRS1993

30 Doradus - Ultraviolet and optical stellar photometry

Ultraviolet Imaging Telescope (UIT) UV magnitudes in four bands, together with optical B magnitudes, are presented for up to 314 early-type stars located in a 9.7 x 9.7 arcmin field centered on R136. The magnitudes have an rms uncertainty estimated at 0.10 mag from a comparison between the UIT magnitudes and the IUE spectra. Spectral types and E(B-V) color excesses are estimated. The mean color excesses following the two extinction curves agree well with the predictions of the two-component extinction model of Fitzpatrick and Savage (1984). However, the degree of nebular extinction is found to vary systematically by large amounts over the 30 Dor field. The minimum of nebular extinction in the central parts of the nebula suggests that dust has been expelled from this region by stellar winds. It is suggested that the form of the UV extinction curve can be understood as a consequence of the evolutionary state of the stellar population responsible for making the dust grains.

Hill, Jesse K.↗

NASA NTRS1972

Abrasion and catastrophic rupture of lunar rocks - Some implications to the micrometeoroid flux at 1 AU.

Results from laboratory studies of hypervelocity impact against crystalline rocks, combined with estimates of the micrometeoroid flux at the lunar surface, provide a basis for calculating abrasion rates and survival times before catastrophic rupture of rocks on the lunar surface. The surface residence times observed for lunar rocks of the order of 10 m.y. (derived from the track densities of iron group nuclei) restrict the mass range of impacting particles of interest to masses less than about 1.01 gram. Extrapolation downward to smaller masses following flux distributions suggested by early satellite data and photographic meteor observations leads to absurd rates of abrasion. Consistent with the observed crater populations on the lunar rocks and with the Pegasus, Explorer, and Pioneer satellite data, the slope of the mass-flux distribution must decrease markedly for masses below 1 to .1 microgram.

Gault, D. E.↗

NASA NTRS1977

Energetic solar flare particles and interplanetary shock waves

Estimates from hard X-ray measurements show that for many flares the bulk of the flare energy is released in the form of approximately 10-100-keV energy electrons. The interaction of these electrons with the solar atmosphere can produce the optical, UV, EUV, and radio emissions observed during the flare impulsive phase. In addition, explosive heating and evaporation of the chromosphere by these electrons can produce the roughly 10 million K soft X-ray plasma. For the large solar flares which produce interplanetary shock waves, the accelerated approximately 10-100-keV electron population may produce the heating and mass motion required for mass ejection and the formation of the shock wave. The shock wave can in turn accelerate ions and electrons to higher energy as it travels through the corona and interplanetary medium.

Lin, R. P.↗

NASA NTRS1987

The cometary contribution to the oceans of primitive earth

The total mass incident on the moon during the period of heavy bombardment is estimated on the basis of recent compilations of the lunar impact record, together with a mass-scaling law for crater diameters in the large-body regime. Using only those craters and basins extant, a lower limit is obtained that is independent of cometary flux models as well as of extrapolations of the lunar impact record or assumptions about the cometary mass spectrum. The results obtained indicate that the earth would have acquired an exogenous ocean of water 4.5-3.8 Gyr ago, if cometary mass constituted more than about 10 percent of the impacting population.

Chyba, Christopher F.↗

DOE OSTI2021

XMP gas-rich dwarfs in nearby voids: results of BTA spectroscopy

We present the second part of results of the ongoing project aimed at searching for and studying eXtremely Metal-Poor (XMP) – adopted as those with Z gas ≲ Z ⊙ /30, or with 12+log (O/H) ≲ 7.21 dex - very gas-rich blue dwarfs in voids. They were first identified in the course of the ‘unbiased’ study of the galaxy population in the nearby Lynx–Cancer void. These very rare and unusual galaxies seem to be the best proxies of so-called Very Young Galaxies (VYGs) defined recently in model simulations by Tweed et al. To date, for 16 pre-selected void XMP candidates, using the Big Telescope Alt-azimuth (BTA), the SAO 6-m telescope, we have obtained spectra suitable for the determination of O/H. For majority of the observed galaxies, the principal line [O iii] λ4363 , used for the direct classical T e method of O/H determination, is undetected. Therefore, to estimate O/H, we use a new ‘strong-lines’ method by Izotov et al. This appears to be the most accurate empirical O/H estimator for the range of 12+log (O/H) ≲ 7.4–7.5. For objects with higher O/H, we use the semi-empirical method by Izotov & Thuan with our modification accounting for variance of the excitation parameter O 32 . Six of those 16 candidates are found, with confidence, to be XMP dwarfs. In addition, eight studied galaxies are less metal-poor, with 12+log (O/H) = 7.24–7.33, and these can also fall into the category of VYG candidates. Taking into account our recently published work and the previously known (nine prototype galaxies) XMP gas-rich void objects, the new findings increase the number of this type of galaxy known to date to a total of 19.

79 ASTRONOMY AND ASTROPHYSICS↗

NASA NTRS1996

The Phase Space Structure Near Neptune Resonances in the Kuiper Belt

The Solar system beyond Neptune is believed to house a population of small primordial bodies left over from the planet formation process. The region up to heliocentric distance -50 AU (a.k.a. the Kuiper Belt) may be the source of the observed short-period comets. In this region, the phase space structure near orbital resonances with Neptune is of special interest for the long-term stability of orbits. There is reason to believe that a significant fraction (perhaps most) of the Kuiper Belt objects reside preferentially in these resonance locations. This paper describes the dynamics of small objects near the major orbital resonances with Neptune. Estimates of the widths of stable resonance zones as well as the properties of resonant orbits are obtained from the circular, planar restricted three-body model. Although this model does not contain the full complexity of the long-term orbital dynamics of Kuiper Belt objects subject to the full N-body perturbations of all the planets, it does provide a baseline for the phase space structure and properties of resonant orbits in the trans-Neptunian Solar system.

Malhotra, Renu↗

NASA NTRS2007

Solutions Network Formulation Report. Visible/Infrared Imager/Radiometer Suite and Advanced Microwave Scanning Radiometer Data Products for National Drought Monitor Decision Support

Drought effects are either direct or indirect depending on location, population, and regional economic vitality. Common direct effects of drought are reduced crop, rangeland, and forest productivity; increased fire hazard; reduced water levels; increased livestock and wildlife mortality rates; and damage to wildlife and fish habitat. Indirect impacts follow on the heels of direct impacts. For example, a reduction in crop, rangeland, and forest productivity may result in reduced income for farmers and agribusiness, increased prices for food and timber, unemployment, reduced tax revenues, increased crime, foreclosures on bank loans to farmers and businesses, migration, and disaster relief programs. In the United States alone, drought is estimated to result in annual losses of between $6 - 8 billion. Recent sustained drought in the United States has made decision-makers aware of the impacts of climate change on society and environment. The eight major droughts that occurred in the United States between 1980 and 1999 accounted for the largest percentage of weather-related monetary losses. Monitoring drought and its impact that occurs at a variety of scales is an important government activity -- not only nationally but internationally as well. The NDMC (National Drought Mitigation Center) and the USDA (U.S. Department of Agriculture) RMA (Risk Management Agency) have partnered together to develop a DM-DSS (Drought Monitoring Decision Support System). This monitoring system will be an interactive portal that will provide users the ability to visualize and assess drought at all levels. This candidate solution incorporates atmospherically corrected VIIRS data products, such as NDVI (Normalized Difference Vegetation Index) and Ocean SST (sea surface temperature), and AMSR-E soil moisture data products into two NDMC vegetation indices -- VegDRI (Vegetation Drought Response Index) and VegOUT (Vegetation Outlook) -- which are then input into the DM-DSS.

Estep, Leland↗

NASA NTRS2012

Variability Selected Low-Luminosity Active Galactic Nuclei in the 4 Ms Chandra Deep Field-South

The 4 Ms Chandra Deep Field-South (CDF-S) and other deep X-ray surveys have been highly effective at selecting active galactic nuclei (AGN). However, cosmologically distant low-luminosity AGN (LLAGN) have remained a challenge to identify due to significant contribution from the host galaxy. We identify long-term X ray variability (approx. month years, observed frame) in 20 of 92 CDF-S galaxies spanning redshifts approx equals 00.8 - 1.02 that do not meet other AGN selection criteria. We show that the observed variability cannot be explained by X-ray binary populations or ultraluminous X-ray sources, so the variability is most likely caused by accretion onto a supermassive black hole. The variable galaxies are not heavily obscured in general, with a stacked effective power-law photon index of Gamma(sub Stack) approx equals 1.93 +/- 0.13, and arc therefore likely LLAGN. The LLAGN tend to lie it factor of approx equal 6-89 below the extrapolated linear variability-luminosity relation measured for luminous AGN. This may he explained by their lower accretion rates. Variability-independent black-hole mass and accretion-rate estimates for variable galaxies show that they sample a significantly different black hole mass-accretion-rate space, with masses a factor of 2.4 lower and accretion rates a factor of 22.5 lower than variable luminous AGNs at the same redshift. We find that an empirical model based on a universal broken power-law power spectral density function, where the break frequency depends on SMBH mass and accretion rate, roughly reproduces the shape, but not the normalization, of the variability-luminosity trends measured for variable galaxies and more luminous AGNs.

Young, M.↗

NASA NTRS2013

Uncertainties in Atomic Data and Their Propagation Through Spectral Models. I.

We present a method for computing uncertainties in spectral models, i.e., level populations, line emissivities, and emission line ratios, based upon the propagation of uncertainties originating from atomic data.We provide analytic expressions, in the form of linear sets of algebraic equations, for the coupled uncertainties among all levels. These equations can be solved efficiently for any set of physical conditions and uncertainties in the atomic data. We illustrate our method applied to spectral models of Oiii and Fe ii and discuss the impact of the uncertainties on atomic systems under different physical conditions. As to intrinsic uncertainties in theoretical atomic data, we propose that these uncertainties can be estimated from the dispersion in the results from various independent calculations. This technique provides excellent results for the uncertainties in A-values of forbidden transitions in [Fe ii]. Key words: atomic data - atomic processes - line: formation - methods: data analysis - molecular data - molecular processes - techniques: spectroscopic

linear sets↗

NASA NTRS2021

Widespread Megaripple Activity Across the North Polar Ergs of Mars

The most expansive dune fields on Mars surround the northern polar cap where various aeolian bedform classes are modified by wind and ice. The morphology and dynamics of these ripples, intermediate-scale bedforms (termed megaripples and transverse aeolian ridges (TARs)), and sand dunes reflect information regarding regional boundary conditions. We found that populations of polar megaripples and larger TARs are distinct in terms of their morphology, spatial distribution, and mobility. Whereas regionally-restricted TARs appeared degraded and static in long-baseline observations, polar megaripples were not only widespread but migrating at relatively high rates (0.13± 0.03 m/Earth year) and possibly more active than other regions on Mars. This high level of activity is somewhat surprising since there is limited seasonality for aeolian transport due to surficial frost and ice during the latter half of the martian year. A comprehensive analysis of an Olympia Cavi dune field estimated that the advancement of megaripples, ripples, and dunes avalanches accounted for ~1%, ~10%, and ~100%, respectively, of the total aeolian system’s sand fluxes. This included dark-toned ripples that migrated the average equivalent of 9.6±6 m/yr over just 22 days in northern summer - unprecedented rates for Mars. While bedform transport rates are some of the highest yet reported on Mars, the sand flux contribution between the different bedforms does not substantially vary from equatorial sites with lower rates. Seasonal off-cap sublimation winds and summer-time polar storms are attributed as the cause for the elevated activity, rather than cryospheric processes. Plain Language Summary “Megaripples” are distinct wind-driven bedforms that occur on the surface of Earth and Mars, often with sizes between that of smaller ripples and larger dunes. Recent work has found the thin martian atmosphere can mobilize some coarse-grained megaripples, overturning prior notions that these were static relic landforms from a past climate. We mapped megaripples and adjacent bedforms across the north polar sand seas, the most expansive collection of dune fields on Mars. Megaripples were found to be widespread across the region and migrating at relatively high rates relative to other sites on Mars that are at lower latitudes. This enhanced activity is likely related to the greater sand fluxes found for neighboring dunes which are driven by summer-time seasonal winds when polar ice is sublimating. In contrast, other megaripples appear to be stabilized, a likely result of inter-granular ice within low wind areas.

Matthew Chojnacki↗

DOE OSTI2023

Assessment of habitat‐specific competition for oral rabies vaccine baits between raccoons and opossums

Abstract Throughout the eastern United States, the National Rabies Management Program (NRMP) distributes oral rabies vaccine (ORV) baits to manage rabies virus circulation in raccoon ( Procyon lotor ) populations. The consumption of vaccine baits by non‐target species including Virginia opossums ( Didelphis virginiana ) may reduce the effectiveness of ORV programs, but competition for baits remains poorly quantified in many areas of the southeastern United States. We distributed placebo ORV baits injected with a biomarker across 4 land cover types (bottomland hardwood, upland pine, riparian, isolated wetland) on the Savannah River Site in South Carolina, USA, 2017–2019. We then trapped and collected whiskers from 247 raccoons and 78 opossums to assess biomarker presence using fluorescent microscopy. Our data revealed greater bait uptake probability by raccoons (estimated x̅ = 0.30, 95% CI = 0.19–0.44) compared to opossums (estimated x̅ = 0.11, 95% CI = 0.05–0.23) across all cover types surveyed. Probability of bait consumption was not affected by cover type or the abundance of raccoons or opossums. Among raccoons, males were more likely to consume baits than females (estimated x̅ = 0.28, 95% CI = 0.17–0.44 for males and 0.14, 95% CI = 0.05–0.31 for females) and probability of consumption increased by 0.08 with each additional day trapped during the 10‐day trapping session. Uptake rates for raccoons were relatively low compared to other studies and not influenced by competition with opossums. These low consumption rates indicate that additional research addressing the roles of baiting season, bait density, and resource selection will be important to maximize ORV bait uptake by target species in these southeastern landscapes.

59 BASIC BIOLOGICAL SCIENCES↗