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At least 1,477 records · Page 82

Kinematic Flexibility Analysis: Hydrogen Bonding Patterns Impart a Spatial Hierarchy of Protein Motion

Elastic network models (ENMs) and constraint-based, topological rigidity analysis are two distinct, coarse-grained approaches to study conformational flexibility of macromolecules. In the two decades since their introduction, both have contributed significantly to insights into protein molecular mechanisms and function. However, despite a shared purpose of these approaches, the topological nature of rigidity analysis, and thereby the absence of motion modes, has impeded a direct comparison. We present an alternative, kinematic approach to rigidity analysis, which circumvents these drawbacks. We introduce a novel protein hydrogen bond network spectral decomposition, which provides an orthonormal basis for collective motions modulated by noncovalent interactions, analogous to the eigenspectrum of normal modes. The zero modes decompose proteins into rigid clusters identical to those from topological rigidity, while nonzero modes rank protein motions by their hydrogen bond collective energy penalty. Our kinematic flexibility analysis bridges topological rigidity theory and ENM, enabling a detailed analysis of motion modes obtained from both approaches. Analysis of a large, structurally diverse data set revealed that collectivity of protein motions, reported by the Shannon entropy, is significantly reduced for rigidity theory compared to normal mode approaches. Strikingly, kinematic flexibility analysis suggests that the hydrogen bonding network encodes a protein-fold specific, spatial hierarchy of motions, which goes nearly undetected in ENM. This hierarchy reveals distinct motion regimes that rationalize experimental and simulated protein stiffness variations. Kinematic motion modes highly correlate with reported crystallographic B factors and molecular dynamics simulations of adenylate kinase. A formal expression for changes in free energy derived from the spectral decomposition indicates that motions across nearly 40% of modes obey enthalpy–entropy compensation. Taken together, our results suggest that hydrogen bond networks have evolved to modulate protein structure and dynamics, which can be efficiently probed by kinematic flexibility analysis.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Shuttle Electrical Power Analysis Program (SEPAP); single string circuit analysis report

An evaluation is reported of the data obtained from an analysis of the distribution network characteristics of the shuttle during a spacelab mission. A description of the approach utilized in the development of the computer program and data base is provided and conclusions are drawn from the analysis of the data. Data sheets are provided for information to support the detailed discussion on each computer run.

Murdock, C. R.↗

An Urban Drainage Scheme for Large-Scale Flood Models

As flood modeling spatial resolutions get finer, physical processes normally neglected, such as urban drainage, must be accounted for. Here, we describe and evaluate an urban drainage scheme for large-scale flood models. The parameterization accounts for urban imperviousness, and water flow over streets and through a prescribed urban drainage network. A parameter sensitivity analysis is performed during three major extreme floods over Rio de Janeiro city, Brazil, at ∼200 m spatial resolution. Results show that, compared to a hypothetical case without urban drainage, representing a drainage network decreases urban flooding during selected extreme events across Rio de Janeiro by 31–53 %. Such a decrease is caused by an underground water storage of up to 2.5 billion m3 across the city during flood peaks. Underground water storage and transport smooth out and delay peak flows by a few hours over major rivers and channels draining the city. Simulations also indicate that the number of residents exposed to flooding drops by 60–80 %, from ∼5 million to 1–2 million, when an urban drainage system is considered during extreme events. Similar proportions are found for social infrastructure (i.e., schools and hospitals) exposed to flooding. Results reveal that racial minority and low-income populations could disproportionally be exposed to extreme floodings across the city. We conclude that representing urban drainage has a substantial impact on flood exposure and should be accounted for in fine resolution modeling. The proposed scheme is particularly useful in poorly monitored cities and where extreme floods are a frequent hazard yet to be tackled.

Urban drainage↗

Artificial Neural Network Representation of Dynamic Criticality Excursion Experiment Data

This paper outlines time dependent considerations in applying the artificial neural network (ANN) paradigm to dynamic nuclear criticality excursion experiment data. The ANN amongst a variety of uses, can apply to function fitting of multiple input-multiple output data sets, pattern recognition, cluster analysis, and time series prediction. The ANN is a component of Machine Learning (ML) data analysis. The practical application of ML to criticality safety has been funded through the Y-12 Plant Directed Research and Demonstration (PDRD) program to support criticality safety and emergency planning efforts. The initial effort considered function fitting of criticality excursion data. Recent efforts successfully extended the ANN to criticality safety code validation. The initial ANN work applied to criticality excursions centered around multivariate function fitting of static (tabular) data taken from the French Consequences Radiologiques d'un Accident de Criticite (CRAC) and SILENE reactor campaigns. The former report (LeCorche) summarized important tabular data for the first 44 CRAC experiments. The initial ANN was trained to specific time-independent inputs, then applied to predict peak fission rate and total fissions for a wide variety of fissile solutions process conditions. This work extends that effort to apply the ANN paradigm to dynamic prediction of time-dependent criticality excursion experiment data. A dynamic criticality excursion in fissile solution represents a complex multiphysics phenomenon. Factors include among other things, coupled neutronic, multiphase fluid flow, temperature, pressure, acoustic shock, boiling heat transfer, reactivity feedback, and radiolytic gas considerations. There have been many efforts to model (over time) as coupled ordinary and (space) as partial differential equations (ODE, PDE). The ANN representation noted here does not rely on solving explicit ODE or PDEs. Rather the intent is to demonstrate that as a time series, the criticality excursion can be predicted by training specific ANN architectures to experimental input and output time series exclusively. The rationale for extending this work to the time-dependent regime is important in developing a 'criticality excursion emulator' solely on the basis of learning characteristics from experiment dynamic data. An emulator is different than a computer code simulator driven by the solution of ODEs and PDEs given select 'tuning parameters' that match outputs to experiments. A criticality excursion emulator, derived exclusively from an ANN or ML, could predict most likely excursion characteristics, trained from historic dynamic experiment data, presented with input values within the range of those experiments. The work noted shows that generic time-series ANN architectures can be satisfactorily applied to the prediction of dynamic, extremely chaotic criticality excursion power given an initial time dependent input series. In reality, an excursion emulator could be driven by user-supplied initial (t=0), time independent or constant values to generate time dependent outputs. Thus ongoing work includes developing a custom ANN such that initial dynamic conditions would be predicted. Those results then serve as inputs to a customized ANN architecture currently in development. (author)

42 ENGINEERING↗

Maize specialized metabolome networks reveal organ-preferential mixed glycosides

Despite the scientific and economic importance of maize, little is known about its specialized metabolism. Here, five maize organs were profiled using different reversed-phase liquid chromatography-mass spectrometry methods. The resulting spectral metadata, combined with candidate substrate-product pair (CSPP) networks, allowed the structural characterization of 427 of the 5,420 profiled compounds, including phenylpropanoids, flavonoids, benzoxazinoids, and auxin-related compounds, among others. Only 75 of the 427 compounds were already described in maize. Analysis of the CSPP networks showed that phenylpropanoids are present in all organs, whereas other metabolic classes are rather organ-enriched. Frequently occurring CSPP mass differences often corresponded with glycosyl- and acyltransferase reactions. The interplay of glycosylations and acylations yields a wide variety of mixed glycosides, bearing substructures corresponding to the different biochemical classes. For example, in the tassel, many phenylpropanoid and flavonoid-bearing glycosides also contain auxin-derived moieties. The characterized compounds and mass differences are an important step forward in metabolic pathway discovery and systems biology research.

59 BASIC BIOLOGICAL SCIENCES↗

The INSTEP Monitoring Network: Merging High-and-Low Cost Measurements to Characterize California Wildfires

Despite challenges with data quality and scope, low-cost sensor networks have skyrocketed in popularity over the last 15 years, making air quality data available on refined spatial scales. More recently, studies have leveraged both high and low-quality instruments to create stronger “hybrid” models, with most studies focusing on particulate matter. Low-cost measurements typically represent ground-level emissions only, providing context for human health issues from climate change-driven events such as wildfires. Since low-cost sensors’ capabilities are localized, daily events and microclimates tend to dominate the data rather than larger regional or atmospheric trends. Likewise, their low cost explains their high uncertainty. In contrast, some regulatory-grade instruments produce column measurements as well, providing reliable information on a broader scope. To bridge this gap while expanding into gas-phase measurements, we deployed 12 air quality sensor packages in California, USA during the 2022 wildfire season. These INSTEP (Inexpensive Network Sensor Technology Exploring Pollution) monitors measure carbon monoxide (CO), carbon dioxide (CO2), ozone (O3), nitrogen dioxide (NO2), and several hydrocarbons including methane (CH4) and formaldehyde (HCHO). Half of the monitors were co-located with remote sensing spectrometers: NASA Pandora and Total Column Carbon Observing Network (TCCON). The overlap in pollutants includes NO2, O3, and HCHO between the INSTEP monitors and the Pandora column measurements. TCCON covers column CO, CO2, and CH4, rounding out our comparison. Most of the monitors were distributed throughout the San Francisco Bay area, and an additional three were located within 100 km of Los Angeles. The sites ranged in geographic and population characteristics, including desert, mountainous, coastal, and urban locations. Since varying environmental conditions such as temperature and pressure are known to challenge sensor performance, we will apply newer sensor “calibration” techniques meant to combat this. We will normalize our sensor signals by z-scoring them prior to applying a single calibration model in the form of multivariate linear regression or an artificial neural network. While this technique has been validated for the hydrocarbon and ozone sensor types (metal oxide), it has not yet been tested on electrochemical and non-dispersive infrared sensors, which are also used in the INSTEP monitors. This will serve as a test to see if this normalization technique – or another – is most effective in accounting for environmental differences among sensors. Related data analysis efforts have found success with a variety of geospatial analysis techniques, including weighted network models in which high-quality instruments are given higher weights than their low-cost counterparts. Our preliminary analysis will focus on kriging, which uses a Gaussian algorithm to assign weights, providing estimated pollution levels at locations between monitors. Smoke trajectory and evolution will also be considered using both measurement types. We also aim to baseline subtract our emission estimates from each region to determine which portion of emissions are regional and local, further characterizing burn differences in northern and southern California fires. Future directions include using INSTEP jointly with TEMPO satellite data, and mobile deployments on aircraft and uncrewed aerial vehicles (UAV).

Low-cost sensors↗

Molecular Dynamics Simulation on the Effect of MgO/Al{sub 2}O{sub 3} Ratio on Structure and Properties of Blast Furnace Slag Under Different Basicity Conditions

The SiO{sub 2}-Al{sub 2}O{sub 3}-CaO-MgO is the basic structural system of blast furnace slag and the composition directly affects the performance of the slag. Molecular dynamics simulations were carried out to analyze the local structure, structural unit, bond angle, transport properties, and enthalpy of the slag with the increase of MgO/Al{sub 2}O{sub 3} mass ratio under different basicity conditions. It was found that the change of MgO/Al{sub 2}O{sub 3} ratio does not affect the short-range order structure, but it will reduce the overall stability of the network structure. Through the analysis of the structural unit of the slag, it was found that the polymerization degree of the system decreases with the increase of MgO/Al{sub 2}O{sub 3} ratio, indicating that the complex network structure of the system is partially depolymerized. Besides, the self-diffusion coefficients of each ion were concluded and the magnitudes were observed to be in the following order: Mg{sup 2+}>Ca{sup 2+}>Al{sup 3+}>O{sup 2-}>Si{sup 4+}. The diffusivity of the slag increases with the increase of MgO/Al{sub 2}O{sub 3} ratio and the corresponding viscosity decreases. And the enthalpy of the slag is increased with the increase of MgO/Al{sub 2}O{sub 3} ratio or basicity, therefore the fuel consumption should also be properly adjusted during the operation of blast furnace to ensure the target temperature.

36 MATERIALS SCIENCE↗

YOLO for Radio Frequency Signal Classification

Radio frequency signal classification plays a pivotal role in various applications, including spectrum management, wireless security, and cognitive radio. Extant signal classification methods require significant data throughput and are not multilabel. We propose a novel approach to radio frequency signal classification by leveraging the You Only Look Once (YOLO) object detection method. YOLO is a state-of-the-art deep learning model renowned for its real-time object detection capabilities in computer vision applications. We adapt YOLO for signal classification to enable the automatic and efficient identification of various signal types within a power spectral density image. Index Terms—radio-frequency analysis, object detection, neural networks, machine learning, deep learning.

42 ENGINEERING↗

The Impact of Microgrids on Transmission Network Congestion Management

This work presents a preliminary analysis considering impact of a grid-connected microgrid on network transmission of the power system. The locational marginal prices of the power system are used to strategically place the microgrid to avoid congestion problems. In addition, a Monte Carlo simulation approach is implemented to confirm that network congestion can be attenuated if appropriate price-based signals are set to define the import and export dynamic between the two systems.

24 POWER TRANSMISSION AND DISTRIBUTION↗

Robust and non-fragile finite time H{sub ∞} synchronization control for complex networks with uncertain inner coupling

This paper addresses robust finite time H{sub ∞} synchronization problem for non-fragile complex networks with uncertain inner coupling. In order to achieve synchronization, a non-fragile controller subjected to randomly occurring perturbations will be considered. By constructing a suitable Lyapunov–Krasovskii functional and utilizing reciprocally convex approach, the criteria for the networks are established in terms of linear matrix inequalities (LMIs). Theoretical analysis and numerical simulations about robust finite time H{sub ∞} synchronization for uncertain inner coupling complex networks are presented.

97 MATHEMATICS AND COMPUTING↗

Singularities, swallowtails and Dirac points. An analysis for families of Hamiltonians and applications to wire networks, especially the Gyroid

Motivated by the Double Gyroid nanowire network we develop methods to detect Dirac points and classify level crossings, aka. singularities in the spectrum of a family of Hamiltonians. The approach we use is singularity theory. Using this language, we obtain a characterization of Dirac points and also show that the branching behavior of the level crossings is given by an unfolding of A{sub n} type singularities. Which type of singularity occurs can be read off a characteristic region inside the miniversal unfolding of an A{sub k} singularity. We then apply these methods in the setting of families of graph Hamiltonians, such as those for wire networks. In the particular case of the Double Gyroid we analytically classify its singularities and show that it has Dirac points. This indicates that nanowire systems of this type should have very special physical properties. - Highlights: Black-Right-Pointing-Pointer New method for analytically finding Dirac points. Black-Right-Pointing-Pointer Novel relation of level crossings to singularity theory. Black-Right-Pointing-Pointer More precise version of the von-Neumann-Wigner theorem for arbitrary smooth families of Hamiltonians of fixed size. Black-Right-Pointing-Pointer Analytical proof of the existence of Dirac points for the Gyroid wire network.

77 NANOSCIENCE AND NANOTECHNOLOGY↗

Modeling and Analysis of Eavesdropping Attack in 802.11ad mmWave Wireless Networks

Next generation wireless communication networks utilizing 60 GHz millimeter wave (mmWave) frequency bands are expected to achieve multi-gigabit throughput with the use of highly directional phased-array antennas. These directional signal beams provide enhanced security to the legitimate networks due to the increased difficulties of eavesdropping. However, there still exists significant possibility of eavesdropping since 1) the reflections of the signal beam from ambient reflectors enables opportunistic stationary eavesdropping attacks, and; 2) carefully designed beam exploration strategy enables active nomadic eavesdropping attack. This paper discusses eavesdropper attack strategies for 802.11ad mmWave systems and provides the first analytical model to characterize the success possibility of eavesdropping in both opportunistic stationary attacks and active nomadic attacks. We derive the success probability of eavesdropping considering the ambient reflectors in the environment and errors introduced in the beam exploration strategies of the proposed eavesdropping attacker models. We study the success probability for both opportunistic stationary attack scenario and active nomadic attack scenario through numerical simulations. In addition to numerical simulations, we also evaluate the proposed attacker models using an 802.11ad test bed consisting of commercially available off-the-shelf devices.

99 GENERAL AND MISCELLANEOUS↗

Performance analysis and acceleration of explicit integration for large kinetic networks using batched GPU computations

Abstract—We demonstrate the systematic implementation of recently-developed fast explicit kinetic integration algorithms that solve efficiently N coupled ordinary differential equations (subject to initial conditions) on modern GPUs. We take representative test cases (Type Ia supernova explosions) and demonstrate two or more orders of magnitude increase in efficiency for solving such systems (of realistic thermonuclear networks coupled to fluid dynamics). This implies that important coupled, multiphysics problems in various scientific and technical disciplines that were intractable, or could be simulated only with highly schematic kinetic networks, are now computationally feasible. As examples of such applications we present the computational techniques developed for our ongoing deployment of these new methods on modern GPU accelerators. We show that similarly to many other scientific applications, ranging from national security to medical advances, the computation can be split into many independent computational tasks, each of relatively small-size. As the size of each individual task does not provide sufficient parallelism for the underlying hardware, especially for accelerators, these tasks must be computed concurrently as a single routine, that we call batched routine, in order to saturate the hardware with enough work.

Haidar Ahmad, Azzam↗

Early Alarm: Robust Event Analysis for Power Systems using 1-D Fully Convolutional Network

This work presents a novel deep learning model for early, accurate, and robust detection, recognition, and temporal localization of multi-type events in large-scale power systems. The proposed method develops a unified 1-D fully convolutional network (FCN) model that takes time series of raw frequency signals measured from a power system as input, extracts distinguishing features, and predicts at every temporal point in the time series if an event is happening and what the type of the event is. Compared to existing methods, the proposed model eliminates the necessity for hand-crafted feature extraction or complicated data pre-processing, can flexibly handle input signals of arbitrary length, and precisely infer the event occurrence time. Most importantly, the model is intentionally trained with incomplete patterns, such that it is more robust to partial features of an event which is common in real-world online recognition, resulting in early alarm for power system failures. Extensive experimental results demonstrate that the proposed method achieves superior performance to the state-of-the-art, and also shows strong robustness to noise and system oscillations.

Li, Chengcheng↗

Control development and sizing analysis for a 5th generation district heating and cooling network using Modelica

5th generation district heating and cooling system (5GDHC) are a relatively new concept. They use a single district loop near ambient temperature to provide heating and cooling. This paper improves on the modelling and control of a 5GDHC system called the reservoir network. The study updates the sewage heat exchanger plant model to more realistically represent seasonal changes, uses refined pump models with variable efficiency, introduces a ground coupled district pipe model to consider the inertia of the district network and implements a new control strategy for geothermal storage and sewage heat exchanger. The new approach reduced operating costs, mainly due to pumping cost for storage, sewage heat exchanger plant and distribution pump, while increasing the overall robustness of the approach in different sizing conditions. Thanks to the new controller, the pumping consumption was reduced by 21% with respect to the original baseline. Furthermore, the new control makes the system take better advantage of design changes, when reducing borehole field size and increasing the sewage heat exchanger size, the pumping energy savings become 29% with respect to the original baseline. Lastly, borehole field temperature stability was analyzed through 40 years of simulation.

Zanetti, Ettore↗

Convex Relaxations of Maximal Load Delivery for Multi-Contingency Analysis of Joint Electric Power and Natural Gas Transmission Networks

Recent increases in gas-fired power generation have engendered increased interdependencies between natural gas and power transmission systems. These interdependencies have amplified existing vulnerabilities in gas and power grids, where disruptions can require the curtailment of load in one or both systems. Although typically operated independently, coordination of these systems during severe disruptions can allow for targeted delivery to lifeline services, including gas delivery for residential heating and power delivery for critical facilities. To address the challenge of estimating maximum joint network capacities under such disruptions, we consider the task of determining feasible steady-state operating points for severely damaged systems while ensuring the maximal delivery of gas and power loads simultaneously, represented mathematically as the nonconvex joint Maximal Load Delivery (MLD) problem. To increase its tractability, we present a mixed-integer convex relaxation of the MLD problem. Then, to demonstrate the relaxation’s effectiveness in determining bounds on network capacities, exact and relaxed MLD formulations are compared across various multi-contingency scenarios on nine joint networks ranging in size from 25 to 1191 nodes. The relaxation-based methodology is observed to accurately and efficiently estimate the impacts of severe joint network disruptions, often converging to the relaxed MLD problem’s globally optimal solution within ten seconds.

29 ENERGY PLANNING, POLICY, AND ECONOMY↗