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DOE OSTI2014

Alternative similarity renormalization group generators in nuclear structure calculations

The similarity renormalization group (SRG) has been successfully applied to soften interactions for ab initio nuclear calculations. In almost all practical applications in nuclear physics, an SRG generator with the kinetic energy operator is used. With this choice, a fast convergence of many-body calculations can be achieved, but at the same time substantial three-body interactions are induced even if one starts from a purely two-nucleon (NN) Hamiltonian. Three-nucleon (3N) interactions can be handled by modern many-body methods. However, it has been observed that when including initial chiral 3N forces in the Hamiltonian, the SRG transformations induce a non-negligible four-nucleon interaction that cannot be currently included in the calculations for technical reasons. Consequently, it is essential to investigate alternative SRG generators that might suppress the induction of many-body forces while at the same time might preserve the good convergence. Here in this work we test two alternative generators with operators of block structure in the harmonic oscillator basis. In the no-core shell model calculations for 3 H, 4 He, and 6 Li with chiral NN force, we demonstrate that their performances appear quite promising.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

DOE OSTI2023

Engineering Supramolecular Hybrid Architectures with Directional Organofluorine Bonds

Understanding how chemical modifications alter the atomic‐scale organization of materials is of fundamental importance in materials engineering and the target of considerable efforts in computational prediction. Incorporating covalent and noncovalent interactions in designing crystals while “piggybacking” on the driving force of molecular self‐assembly has augmented efforts to understand the emergence of complex structures using directed synthesis. In this work, microcrystalline powders of the silver 2‐, 3‐, and 4‐fluorobenzenethiolates are prepared and their structures are resolved by small‐molecule serial femtosecond X‐ray crystallography. These three compounds enable the emergence and role of supramolecular synthons in the crystal structures of 3D metal‐organic chalcogenolates to be examined. The unique divergence in their optoelectronic, morphological, and structural behaviors is assessed. The extent of CHF interactions and their influence on the structure and the observed trends in the thermal stability of the crystals are quantified through theoretical calculations and thermogravimetric analysis.

Kotei, Patience A.↗

NASA NTRS1992

Force production mechanisms of a tangential jet on bodies at high alpha

This work explores the mechanisms by which tangential slot blowing creates forces on a body at a high angle of attack. The study is conducted numerically by solving the three-dimensional, compressible-flow Navier-Stokes equations. A tangent-ogive cylinder configuration is used with the blowing slot located both on the nose and on the cylindrical part of the body. The angle of attack used is 30 deg., the Mach no. is 0.2 and the Reynolds no., based on diameter, is 52,000. Several conclusions were made concerning the physical mechanisms by which the jet interacts with the ambient flowfield to produce a side force: (1) A centrifugal force component is created at the wall due to the momentum of the jet being forced to follow the curvature of the surface. (2) A large amount of vorticity is added to the flowfield by the jet. In the region of the slot, the vorticity has the effect of inducing circulation around the body. Downstream of the slot, the vorticity alters the strength of the nose vortices. (3) The position of the nose vortices can be altered to the jet changing the location of separation. And (4), the jet has the ability to excite unstable behavior producing a global change in the character of the flow.

Font, G. I.↗

DOE OSTI2017

Variational Calculation of the Ground State of Closed-Shell Nuclei Up to $A$ = 40

Variational calculations of ground-state properties of 4He, 16O and 40Ca are carried out employing realistic phenomenological two- and three-nucleon potentials. The trial wave function includes twoand three-body correlations acting on a product of single-particle determinants. Expectation values are evaluated with a cluster expansion for the spin-isospin dependent correlations considering up to five-body cluster terms. The optimal wave function is obtained by minimizing the energy expectation value over a set of up to 20 parameters by means of a nonlinear optimization library. We present results for the binding energy, charge radius, point density, single-nucleon momentum distribution, charge form factor, and Coulomb sum rule. We find that the employed three-nucleon interaction becomes repulsive for A ≥ 16. In 16O the inclusion of such a force provides a better description of the properties of the nucleus. In 40Ca instead, the repulsive behavior of the three-body interaction fails to reproduce experimental data for the charge radius and the charge form factor. We find that the high-momentum region of the momentum distributions, determined by the short-range terms of nuclear correlations, exhibit a universal behavior independent of the particular nucleus. The comparison of the Coulomb sum rules for 4He, 16O, and 40Ca reported in this work will help elucidate in-medium modifications of the nucleon form factors.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

DOE OSTI2013

Quantum levitation of nanoparticles seen with ultracold neutrons

Analyzing new experiments with ultracold neutrons (UCNs) we show that physical adsorption of nanoparticles/nanodroplets, levitating in high-excited states in a deep and broad potential well formed by van der Waals/Casimir-Polder (vdW/CP) forces results in new effects on a cross-road of the fields of fundamental interactions, neutron, surface and nanoparticle physics. Accounting for the interaction of UCNs with nanoparticles explains a recently discovered intriguing so-called 'small heating' of UCNs in traps. It might be relevant to the striking conflict of the neutron lifetime experiments with smallest reported uncertainties by adding false effects there.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗

NASA NTRS1992

Propulsion simulator for magnetically suspended wind tunnel models

Simulation of propulsion induced aerodynamic forces and moments, which arise as a result of interactions between propulsive jets and the free stream, is one of the most desired capabilities in magnetic suspension wind tunnels. The feasibility of generating exhaust jets of appropriate characteristics onboard magnetically suspended models was examined. Four concepts of remotely operated propulsion simulators was considered. Three conceptual designs involving conventional technologies such as compressed gas cylinders, liquid monopropellants, and solid propellants were developed. The fourth concept, a laser assisted thruster, which can potentially simulate both inlet and exhaust flows, was found to require very high power levels. The measurement of aerodynamic forces and/or moments were demonstrated, including the effects of exhaust jets, in MSBS wind tunnels. Two propulsion simulator models were developed, a small scale and a large scale unit, both using compressed, liquified CO2 as propellant. Results of the wind tunnel tests with the small scale simulator are discussed.

Joshi, P. B.↗

DOE OSTI2017

Skeletal Dysplasia Mutations Effect on Human Filamins’ Structure and Mechanosensing

Cells’ ability to sense mechanical cues in their environment is crucial for fundamental cellular processes, leading defects in mechanosensing to be linked to many diseases. The actin cross-linking protein Filamin has an important role in the conversion of mechanical forces into biochemical signals. Here, we reveal how mutations in Filamin genes known to cause Larsen syndrome and Frontometaphyseal dysplasia can affect the structure and therefore function of Filamin domains 16 and 17. Employing X-ray crystallography, the structure of these domains was first solved for the human Filamin B. The interaction seen between domains 16 and 17 is broken by shear force as revealed by steered molecular dynamics simulations. The effects of skeletal dysplasia associated mutations of the structure and mechanosensing properties of Filamin were studied by combining various experimental and theoretical techniques. The results showed that Larsen syndrome associated mutations destabilize or even unfold domain 17. Interestingly, those Filamin functions that are mediated via domain 17 interactions with other proteins are not necessarily affected as strongly interacting peptide binding to mutated domain 17 induces at least partial domain folding. Mutation associated to Frontometaphyseal dysplasia, in turn, transforms 16–17 fragment from compact to an elongated form destroying the force-regulated domain pair.

59 BASIC BIOLOGICAL SCIENCES↗

DOE OSTI2018

Experimental Validation of UO 2 Microstructural Evolutions for NEAMS Tool MARMOT (Final Report)

The project was aimed at experimentally validating the NEAMS tool MARMOT for predicting the GB migration and pore and GB interaction in UO 2 oxide fuel under the driving forces of high temperatures and large temperature gradient anticipated in a LWR fuels. By performing the well-aligned experiments and simulations simultaneously using precisely defined initial conditions, the high-quality experiment data will provide a direct benchmarking of the MARMOT code by evaluating the fidelity of physics, materials science principles and models, and the coupling of multi-physics solutions. A bottom up approach will be used by studying each specific behavior while the code will be statistically validated again the overall structural evolution. The GB energy, specific GB mobility, grain growth kinetic, GB interaction with pores, and effects of large temperature gradients will be specifically studied using experiments. The isothermal grain growth, grain growth under large temperature gradient, and pore and GB interactions will be modeled using 2-D or 3-D simulations. Four questions will be answered at the conclusion of this project: Is the anisotropic grain boundary energy model able to better represent a real view the grain property and would it have a significant impact on the grain growth behavior? Is the classical Zener pinning model in MARMOT sufficient for representing the retarding effect on grain gain boundary migration from pores? Does the temperature gradient have a minimum impact on the average grain growth behavior at varied average temperatures and temperature gradients? Does the pore migrate towards the high temperature domain at the velocities predicted by MARMOT code?

11 NUCLEAR FUEL CYCLE AND FUEL MATERIALS↗

DOE OSTI2014

Solving The Long-Standing Problem Of Nuclear Reactions At The Highest Microscopic Level: Annual Continuation And Progress Report

The aim of this project is to develop a comprehensive framework that will lead to a fundamental description of both structural properties and reactions of light nuclei in terms of constituent protons and neutrons interacting through nucleon-nucleon (NN) and three-nucleon (NNN) forces. This project will provide the research community with the theoretical and computational tools that will enable: (1) an accurate prediction for fusion reactions that power stars and Earth-based fusion facilities; (2) an improved description of the spectroscopy of exotic nuclei, including light Borromean systems; and (3) a fundamental understanding of the three-nucleon force in nuclear reactions and nuclei at the drip line. To achieve this goal, we build upon a promising technique emerged recently as a candidate to reach a fundamental description of low-energy binary reactions between light ions, that is the ab initio no-core shell model combined with the resonating-group method (NCSM/RGM). This approach has demonstrated the capability to describe binary reactions below the three-body breakup threshold based, up to now, on similarity-renormalization-group (SRG) 5 evolved NN only potentials. To advance the understanding of nuclear reactions at low energies and light exotic nuclei, this project aims at extending the NCSM/RGM approach to include the full range of NNN interactions as well as the treatment of three-cluster bound and continuum states. Three-nucleon interactions are unavoidable components of a fundamental nuclear Hamiltonian obtained in a low-energy effective theory. In addition, three-nucleon force terms are induced by the SRG procedure and have to be taken into account for such a transformation to be unitary in many-body calculations. At the same time, the introduction of three-body cluster states is key to achieve a microscopic description of Borromean systems as well as three-body breakup reactions. This project will both enhance the fundamentality and enlarge the scope of our microscopic description of nuclear properties. A successful completion of this project will result in improved accuracy of the 3 He( 3 He,2p) 4 He and 3 He(α,γ) 7 Be reaction rates and consequently, in enhancement of the predictive capability of the standard solar model. In addition, we will study also the mirror reactions 3 H( 3 H,2n) 4 He and 3 H(α,γ) 7 Li (a key reaction for the production of 7 Li in the standard big-bang nucleosynthesis), and the spectroscopy of the 6 He, 6 Be, and 11 Li nuclei.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

DOE OSTI2025

Evidence for the existence and ecological relevance of fast-cycling mineral-associated organic matter

Longstanding theories and models classify mineral-associated organic matter as the large ( ~ 60%) but slow-cycling and persistent portion of soil organic matter. Strong physico-chemical interactions and diffusion limitations restrict the turnover of mineral-associated organic matter, allowing carbon and nitrogen bound therein to persist in soil for as long as centuries to millennia. However, mineral-associated organic matter is a chemically and functionally diverse pool with a substantial portion cycling at relatively fast (i.e., minutes to years) timescales. Despite a growing body of evidence for the heterogenous and multi-pool nature of mineral-associated organic matter, we lack consensus on how to conceptualize and directly quantify fast-cycling mineral-associated organic matter and its ecological significance. We demonstrate that the dynamic qualities of fast-cycling mineral-associated organic matter vary based on 1) the chemistry of the mineral particles and organic matter, 2) the complex set of interactions between organic matter and the mineral matrix, and 3) the presence and strength of destabilizing forces that lead to decomposition or loss of mineral-associated organic matter (i.e., plant-microbe interactions, agricultural intensification, and climate change). Finally, we discuss potential implications and research opportunities for how we measure, manage, and model the dynamic subfraction of this otherwise persistent pool of soil organic matter.

Biological and medical sciences↗

DOE OSTI2016

Mesoscale Particle-Based Model of Electrophoretic Deposition

In this paper, we present and evaluate a semiempirical particle-based model of electrophoretic deposition using extensive mesoscale simulations. We analyze particle configurations in order to observe how colloids accumulate at the electrode and arrange into deposits. In agreement with existing continuum models, the thickness of the deposit increases linearly in time during deposition. Resulting colloidal deposits exhibit a transition between highly ordered and bulk disordered regions that can give rise to an appreciable density gradient under certain simulated conditions. The overall volume fraction increases and falls within a narrow range as the driving force due to the electric field increases and repulsive intercolloidal interactions decrease. We postulate ordering and stacking within the initial layer(s) dramatically impacts the microstructure of the deposits. Finally, we find a combination of parameters, i.e., electric field and suspension properties, whose interplay enhances colloidal ordering beyond the commonly known approach of only reducing the driving force.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

DOE OSTI2015

MAGNETOHYDRODYNAMIC EFFECTS ON PULSED YOUNG STELLAR OBJECT JETS. I. 2.5D SIMULATIONS

In this paper, we explore the dynamics of radiative axisymmetric magnetohydrodynamic (MHD) jets at high resolution using adaptive mesh refinement methods. The goal of the study is to determine both the dynamics and emission properties of such jets. To that end, we have implemented microphysics enabling us to produce synthetic maps of Hα and [S II]. The jets are pulsed either sinusoidally or randomly via a time-dependent ejection velocity which leads to a complicated structure of internal shocks and rarefactions as has been seen in previous simulations. The high resolution of our simulations allows us to explore in great detail the effect of pinch forces (due to the jet's toroidal magnetic field) within the ''working surfaces'' where pulses interact. We map the strong Hα emission marking shock fronts and the strong [S II] emission inside cooling regions behind shocks as observed with high-resolution images of jets. We find that pinch forces in the stronger field cases produce additional emission regions along the axis as compared with purely hydrodynamic runs. These simulations are a first step to understanding the full three-dimensional emission properties of radiative MHD jets.

79 ASTRONOMY AND ASTROPHYSICS↗

DOE OSTI2017

Standardization of accelerator irradiation procedures for simulation of neutron induced damage in reactor structural materials

Self-ion irradiation is widely used as a method to simulate neutron damage in reactor structural materials. Accelerator-based simulation of void swelling, however, introduces a number of neutron-atypical features which require careful data extraction and in some cases introduction of innovative irradiation techniques to alleviate these issues. We briefly summarize three such atypical features: defect imbalance effects, pulsed beam effects, and carbon contamination. The latter issue has just been recently recognized as being relevant to simulation of void swelling and is discussed here in greater detail. It is shown that carbon ions are entrained in the ion beam by Coulomb force drag and accelerated toward the target surface. Beam-contaminant interactions are modeled using molecular dynamics simulation. By applying a multiple beam deflection technique, carbon and other contaminants can be effectively filtered out, as demonstrated in an irradiation of HT-9 alloy by 3.5 MeV Fe ions.

Environmental Molecular Sciences Laboratory↗

DOE OSTI2017

Material property analytical relations for the case of an AFM probe tapping a viscoelastic surface containing multiple characteristic times

We explore the contact problem of a flat-end indenter penetrating intermittently a generalized viscoelastic surface, containing multiple characteristic times. This problem is especially relevant for nanoprobing of viscoelastic surfaces with the highly popular tapping-mode AFM imaging technique. By focusing on the material perspective and employing a rigorous rheological approach, we deliver analytical closed-form solutions that provide physical insight into the viscoelastic sources of repulsive forces, tip-sample dissipation and virial of the interaction. We also offer a systematic comparison to the well-established standard harmonic excitation, which is the case relevant for dynamic mechanical analysis (DMA) and for AFM techniques where tip–sample sinusoidal interaction is permanent. This comparison highlights the substantial complexity added by the intermittent-contact nature of the interaction, which precludes the derivation of straightforward equations as is the case for the well-known harmonic excitations. The derivations offered have been thoroughly validated through numerical simulations. Despite the complexities inherent to the intermittent-con-tact nature of the technique, the analytical findings highlight the potential feasibility of extracting meaningful viscoelastic properties with this imaging method.

36 MATERIALS SCIENCE↗

DOE OSTI2018

First-principles calculations and experimental studies of: XYZ 2 thermoelectric compounds: Detailed analysis of van der Waals interactions

First-principles calculations can accelerate the search for novel high-performance thermoelectric materials. However, the prediction of the thermoelectric properties is strongly dependent on the approximations used for the calculations. Here, thermoelectric properties were calculated with different computational approximations ( i.e. , PBE-GGA, HSE06, spin–orbit coupling and DFT-D3) for three layered XYZ 2 compounds (TmAgTe 2 , YAgTe 2 , and YCuTe 2 ). In addition to the computations, the structural, electrical and thermal properties of these compounds were measured experimentally and compared to the computations. Furthermore, an enhanced prediction of the crystal structure and heat capacity was achieved with the inclusion of van der Waals interactions due to more accurate modeling of the interatomic forces. In particular, a large shift of the acoustic phonons and low-frequency optical phonons to lower frequencies was observed from the dispersion-optimized structure. From the phonon dispersion curves of these compounds, the ultralow thermal conductivity in the investigated XYZ 2 compounds could be described by a recent developed minimum thermal conductivity model. Additionally, for the prediction of the electrical conductivity, a temperature-dependent relaxation time was used, and it was limited by acoustic phonons. While HSE06 has only a small influence on the electrical properties due to a computed band gap energy of >0.25 eV, the inclusion of both van der Waals interactions and spin–orbit coupling leads to a more accurate band structure, resulting in better prediction of electrical properties. Furthermore, the experimental thermoelectric properties of YAgTe 2 , TmAg 0.95 Zn 0.05 Te 2 and TmAg 0.95 Mg 0.05 Te 2 were measured, showing an increase in zT of TmAg 0.95 Zn 0.05 Te 2 by more than 35% ( zT = 0.47 ± 0.12) compared to TmAgTe 2 .

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

NASA NTRS2018

Consequences of Different Air-Sea Feedbacks on Ocean Using MITgcm and MERRA-2 Forcing: Implications for Coupled Data Assimilation Systems

Ocean surface flux estimates from atmospheric and oceanic reanalyses contain errors that compensate for inaccuracies in the respective atmosphere and ocean models used to generate these reanalyses. A conundrum for climate studies is the discrepancy between surface fluxes that minimize model-data differences for an atmosphere-only model vs surface fluxes that minimize model-data differences for an ocean model. As a first step towards a consistent coupled ocean-atmosphere data-assimilation (DA) system, we compare surface net heat flux from a state-of-the-art atmospheric reanalysis, the Modern-Era Retrospective analysis for Research and Applications, Version 2 (MERRA-2), to net heat flux from a state-of-the-art ocean state estimate, the Estimating the Circulation and Climate of the Ocean Version 4 (ECCO-v4). The possible impacts of the MERRA-2 and ECCO-v4 air-sea net heat flux difference in a coupled DA system were assessed using a set of experiments designed to imitate different “flavors” of a coupled DA system in an ocean-only setup. This was done by forcing the ECCO-v4 underlying ocean model - the Massachusetts Institute of Technology general circulation model (MITgcm) - with different sets of MERRA-2 fields and utilizing different forcing methods. By doing so we were able to turn off different air-sea feedbacks which, in a coupled DA setup, are partially muted by the constraining observations. The set of experiments, therefore, represents a range of active feedbacks in different “flavors” of coupled data-assimilation systems. For the period 1992–2011, MERRA-2 net heat flux has a global mean difference of -4.9 Wm(exp -2) relative to ECCO-v4. When MERRA-2 surface fields are used to force MITgcm, imbalances in the energy and the hydrological cycles of MERRA-2, which are directly related to the fact that MERRA-2 was created without an interactive ocean, propagate to the ocean. The experiment in which MITgcm is forced with MERRA-2 fluxes (MERRA-2-flux experiment) results in a 2.5°C global mean Sea Surface Temperature (SST) cooling, a 1m reduction in global mean sea level, and other drastic changes in the large scale ocean circulation relative to those resulting when the MITgcm is forced with the optimized ECCO-v4 net heat flux (the ECCO-v4 experiment itself). When MITgcm is forced with MERRA-2 state variables (MERRA-2-state experiment), the SST is somewhat restored to the observed SST, but the errors are shifted to the water cycle, resulting in a global mean sea level increase of 2.7 m. To further explore the pros and cons of these two approaches, we introduce a new intermediate forcing method in which the ocean is forced with turbulent fluxes but has a long wave feedback. This method, unlike MERRA-2 state, preserves the MERRA-2 water and salinity cycles, and it reduces the SST error compared to the MERRA-2-flux experiment, but the SST is not as good as that in the MERRA-2-state experiment. Our results have implications for ocean-model forcing recipes and clearly reveal the undesirable consequences of limiting the feedbacks in either these types of experiments or in coupled DA.

Ehud Strobach↗

DOE OSTI2021

Quantifying the Long‐Range Coupling of Electronic Properties in Proteins with ab initio Molecular Dynamics**

Abstract The delicate interplay of covalent and non‐covalent interactions in proteins is inherently quantum mechanical and highly dynamic in nature. To directly interrogate the evolving nature of the electronic structure of proteins, we carry out 100‐ps‐scale ab initio molecular dynamics simulations of three representative small proteins with range‐separated hybrid density functional theory. We quantify the nature and length‐scale of the coupling of residue‐specific charge probability distributions in these proteins. While some nonpolar residues exhibit expectedly narrow charge distributions, most polar and charged residues exhibit broad, multimodal distributions. Even for nonpolar residues, we observe sequence‐specific deviations corresponding to charge accumulation or depletion that would be challenging to capture in a fixed charge force field. We quantify the effect of residue‐residue interactions on charge distributions first with linear cross‐correlations. We then show how additional insight can be gained from evaluating the mutual information of charge distributions. We show that a significant number of residues couple most strongly with residues that are distant in both sequence and space over a range of secondary structures including α‐helical, β‐sheet, disulfide bridging, and lasso motifs. The mutual information analysis is necessary to capture coupling between some polar and charged residues that would be otherwise missed.

Yang, Zhongyue↗

DOE OSTI2021

InteraChem: Virtual Reality Visualizer for Reactive Interactive Molecular Dynamics

Interactive molecular dynamics in virtual reality (IMD-VR) simulations provide a digital molecular playground for students as an alternative or complement to traditional molecular modeling kits or 2D illustrations. Previous IMD-VR studies have used molecular mechanics to enable simulations of macromolecules such as proteins and nanostructures for the classroom setting with considerable success. Here, we present the InteraChem molecular visualizer, intended for reactive IMD-VR simulation using semiempirical and ab initio methods. InteraChem visualizes not only the molecular geometry but also (1) isosurfaces such as molecular orbitals and electrostatic potentials and (2) two-dimensional graphs of time-varying simulation quantities such as kinetic/potential energy, internal coordinates, and user-applied force. Additionally, InteraChem employs speech recognition to facilitate user interaction and introduces a novel “atom happiness” visualization using emojis to indicate the energetic feasibility of a particular bonding arrangement. Furthermore, we include a set of accompanying exercises that we have used to teach chemical reactivity in small molecular systems.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗