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At least 1,477 records · Page 82

Neurofilament protein defines regional patterns of cortical organization in the macaque monkey visual system: a quantitative immunohistochemical analysis

Visual function in monkeys is subserved at the cortical level by a large number of areas defined by their specific physiological properties and connectivity patterns. For most of these cortical fields, a precise index of their degree of anatomical specialization has not yet been defined, although many regional patterns have been described using Nissl or myelin stains. In the present study, an attempt has been made to elucidate the regional characteristics, and to varying degrees boundaries, of several visual cortical areas in the macaque monkey using an antibody to neurofilament protein (SMI32). This antibody labels a subset of pyramidal neurons with highly specific regional and laminar distribution patterns in the cerebral cortex. Based on the staining patterns and regional quantitative analysis, as many as 28 cortical fields were reliably identified. Each field had a homogeneous distribution of labeled neurons, except area V1, where increases in layer IVB cell and in Meynert cell counts paralleled the increase in the degree of eccentricity in the visual field representation. Within the occipitotemporal pathway, areas V3 and V4 and fields in the inferior temporal cortex were characterized by a distinct population of neurofilament-rich neurons in layers II-IIIa, whereas areas located in the parietal cortex and part of the occipitoparietal pathway had a consistent population of large labeled neurons in layer Va. The mediotemporal areas MT and MST displayed a distinct population of densely labeled neurons in layer VI. Quantitative analysis of the laminar distribution of the labeled neurons demonstrated that the visual cortical areas could be grouped in four hierarchical levels based on the ratio of neuron counts between infragranular and supragranular layers, with the first (areas V1, V2, V3, and V3A) and third (temporal and parietal regions) levels characterized by low ratios and the second (areas MT, MST, and V4) and fourth (frontal regions) levels characterized by high to very high ratios. Such density trends may correspond to differential representation of corticocortically (and corticosubcortically) projecting neurons at several functional steps in the integration of the visual stimuli. In this context, it is possible that neurofilament protein is crucial for the unique capacity of certain subsets of neurons to perform the highly precise mapping functions of the monkey visual system.

Non-NASA Center↗

From 2D to 4D: a containerized workflow and browser to explore dynamic chromatin architecture

Background Characterizing the physical organization of the genome is essential for understanding long-range gene regulation, chromatin compartmentalization, and epigenetic accessibility. Hi-C experiments generate two-dimensional (2D) genome-wide contact maps of chromatin interactions by capturing the spatial proximity between genomic loci, which reveal interaction frequencies but lack the spatial resolution needed to interpret the three-dimensional (3D) genome structure(s). Emerging evidence suggests that epigenetic regulation is closely linked to 3D genome architecture, and that structural changes over time (4D) drive key biological processes in development, disease, and environmental response. Thus, integrating 3D structure with functional data is critical for a more complete understanding of genome regulation. Previous work, most notably the 4DHiC chromosome modeling framework, has shown that physical multi-dimensional modeling approaches rooted in polymer physics and molecular dynamics can resolve these structures at biologically meaningful resolutions by integrating temporal Hi-C data with physical constraints to uncover dynamic chromosome reorganization. Thus, molecular dynamics simulations, constrained by Hi-C contact matrices, can resolve fine-scale structural changes and reveal functionally significant transitions in chromatin conformation. Results Herein, we present the 4D Genome Browser Workflow (4DGBWorkflow) and the 4D Genome Browser (4DGB). The algorithm is based on the 4DHiC method, and the containerized tool is an end-to-end workflow that can transform, filter, and view 4D epigenomics and chromatin datasets, allowing non-specialists to apply three-dimensional modeling principles to diverse datasets and experimental conditions. The software executes on a laptop running macOS, Linux or Windows. From input Hi-C files (.hic), the 4DGBWorkflow produces 3D reconstructions of chromosomes, integrates the reconstruction with track data (e.g., epigenetic marks, transcriptome profiles), and provides comparative visualization of the results in a single workflow. Conclusions The 4DGBWorkflow and 4D Genome Browser are open-source tools for comparative analysis and visualization of 4D chromosome datasets, including chromatin architecture and epigenomic signals. Automatic integration of Hi-C data with molecular dynamics democratizes the construction of time resolved 3D genome structures, simplifying complex simulations and data integration schemes.

3D Genome Browser↗

Dark matter in 3D

We discuss the relevance of directional detection experiments in the post-discovery era and propose a method to extract the local dark matter phase space distribution from directional data. The first feature of this method is a parameterization of the dark matter distribution function in terms of integrals of motion, which can be analytically extended to infer properties of the global distribution if certain equilibrium conditions hold. The second feature of our method is a decomposition of the distribution function in moments of a model independent basis, with minimal reliance on the ansatz for its functional form. We illustrate our method using the Via Lactea II N-body simulation as well as an analytical model for the dark matter halo. Furthermore, we conclude that O(1000) events are necessary to measure deviations from the Standard Halo Model and constrain or measure the presence of anisotropies.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Innovative Imagery System for Enhanced Habitability Onboard ISS: Desired Features and Possible Hardware Applications

With the advent of the ISS and the experience of Russian, European, and US crewmembers on Mir, the importance of the psychological element in long duration missions is increasingly recognized. An integrated imagery system or Magic Window System could enhance the habitability, performance, and productivity for long term stays in space. Because this is type of system is a new concept for space, functional and technical requirements need to be determined. As part of a three-year project, the functional and technical requirements for an Imagery System onboard the International Space Station (ISS) have been explored. Valuable information was gathered from a survey completed by participants that had been in analog environments (remote/isolated) such as Antarctica, Aquarius, ISS crewmember debriefs, and crew support meetings to identify key functions desired for an integrated Magic Window System. Exercise and medical care activities were identified as areas that could benefit from such a system. It was determined that for exercise, it was worth exploring the concept of displaying a dynamic screen that changes as the crewmember's speed changes while showing physiological measures in a combined display. In terms of enhancing the interfaces for medical care activities, the Magic Window System could show video clips along side procedures for just-in-time training scenarios through a heads-up display. In addition, the portability, usability, and reliability were stressed as important considerations for an integrated system of technologies or Magic Window System. In addition, a review of state-of-the-art screens and other existing technologies such as tablet PCs and Personal Digital Assistants (PDAs) was conducted and contributed to defining technical requirements and feasibility of systems. Some heuristic evaluations of large displays and PDAs were conducted. Finally, feasibility for implementation onboard ISS has been considered. Currently, specific headset units are undergoing usability testing. The outcome of these activities will be valuable to determine the best candidates for an integrated system that could accommodate different needs depending on task.

Whitmore, Mihriban↗

Adjoint and Importance in Monte Carlo Application

The use of the Monte Carlo method for the study of deep penetration of radiation into and through shields entails the use of sophisticated methods of variance reduction to make such calculations economical or even feasible. This paper presents an exposition of the most useful methods of variance reduction. The exposition is unified by consistent exploitation of adjoint formulations to estimate expected values, as in previous work, and further to evaluate the variance of the resulting estimates., The connection between adjoint formulations and the choice of biasing schemes is also investigated. In particular, it is shown that the value function (the solution of the integral equation of the adjoint formulation) is always a good choice for importance function biasing; a sharp upper bound, independent of the particular problem, is found for the resulting variance. Predicted (analytic) and experimental (Monte Carlo) results are also given for a simple one-dimensional problem.

DIFFERENTIAL EQUATIONS↗

Lieb-Thirring inequality for a model of particles with point interactions

We consider a model of quantum-mechanical particles interacting via point interactions of infinite scattering length. In the case of fermions we prove a Lieb-Thirring inequality for the energy, i.e., we show that the energy is bounded from below by a constant times the integral of the particle density to the power (5/3).

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Additively Manufactured Photovoltaic Inverter (AMPVI)

Successful integration of hundreds of gigawatts of solar photovoltaics (PV) into the electric power system requires transformative power conversion system design that optimizes various trade-offs among conflicting objectives, such as performance, reliability, functionality, and cost. To address this need, National Renewable Energy Laboratory, Oak Ridge National Laboratory, and Purdue University teamed up to develop a unique PV inverter design. The Additively Manufactured Photovoltaic Inverter (AMPVI) combines newer wide bandgap high-voltage silicon carbide (SiC) semiconductor devices with revolutionary concepts such as additive manufacturing and multi-objective magnetic design optimization. The AMPVI will not only provide superior technical capabilities in terms of energy conversion but also mitigate market barriers for SiC-based PV inverters. The benefits for this design will include better utilization of PV power due to higher DC voltage, lower operations and maintenance costs, better system efficiency, longer system lifetime, and advanced grid support functionalities for easier grid integration. All these advantages will lead to a significant reduction of the levelized cost of energy for PV systems. Activities in Budget Period 1 (BP1) of this 3-year integrated project were focused on development and component-level validation of the foundational building blocks needed for the AMPVI. Multiple interrelated tasks were completed in parallel during work towards the initial development of the high-voltage SiC-based power block, gate driver, controller board, and control algorithms. Initial development of magnetic design tools and initial inverter thermal and mechanical design was also completed in this period. All these activities ensured that the initial prototype (called “alpha-prototype”) power block and controller would be ready after BP1 for integration into the first inverter prototype (i.e., the alpha-prototype inverter) in BP2.

14 SOLAR ENERGY↗

Generalized proportional-plus-derivative compensators for a class of uncertain plants

Controller design for a class of systems consisting of a positive-real transfer function P(s) followed by an integrator is considered. A generalized proportional-plus-derivative compensator is proposed for robustly stabilizing a class of uncertain plants represented by a positive-real transfer function followed by an integrator. The novel feature of the proposed compensator is that the proportional and rate gains used are transfer functions rather than constants, which allows more design freedom and offers the potential for better performance with guaranteed robust stability. The results obtained are for single-input/single-output systems. If the results are extended to the multivariable case, they will then be applicable to realistic flexible spacecraft.

Joshi, Suresh M.↗

A combined integrating and differentiating matrix formulation for boundary value problems on rectangular domains

Integrating and differentiating matrices allow the numerical integration and differential of functions whose values are known at points of a discrete grid. Previous derivations of these matrices were restricted to one dimensional grids or to rectangular grids with uniform spacing in at least one direction. Integrating and differentiating matrices were developed for grids with nonuniform spacing in both directions. The use of these matrices as operators to reformulate boundary value problems on rectangular domains as matrix problems for a finite dimensional solution vector is considered. The method requires nonuniform grids which include near boundary points. An eigenvalue problem for the transverse vibrations of a simply supported rectangular plate is solved to illustrate the method.

Lakin, W. D.↗

A combined integrating- and differentiating-matrix formulation for boundary-value problems on rectangular domains

Integrating and differentiating matrices allow the numerical integration and differential of functions whose values are known at points of a discrete grid. Previous derivations of these matrices were restricted to one dimensional grids or to rectangular grids with uniform spacing in at least one direction. Integrating and differentiating matrices were developed for grids with nonuniform spacing in both directions. The use of these matrices as operators to reformulate boundary value problems on rectangular domains as matrix problems for a finite dimensional solution vector is considered. The method requires nonuniform grids which include near boundary points. An eigenvalue problem for the transverse vibrations of a simply supported rectangular plate is solved to illustrate the method.

Lakin, W. D.↗

3D RISM theory with fast reciprocal-space electrostatics

The calculation of electrostatic solute-solvent interactions in 3D RISM (“three-dimensional reference interaction site model”) integral equation theory is recast in a form that allows for a computational treatment analogous to the “particle-mesh Ewald” formalism as used for molecular simulations. In addition, relations that connect 3D RISM correlation functions and interaction potentials with thermodynamic quantities such as the chemical potential and average solute-solvent interaction energy are reformulated in a way that calculations of expensive real-space electrostatic terms on the 3D grid are completely avoided. These methodical enhancements allow for both, a significant speedup particularly for large solute systems and a smoother convergence of predicted thermodynamic quantities with respect to box size, as illustrated for several benchmark systems.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

SWIFT BAT Survey of AGN

We present the results1 of the analysis of the first 9 months of data of the Swift BAT survey of AGN in the 14-195 keV band. Using archival X-ray data or follow-up Swift XRT observations, we have identified 129 (103 AGN) of 130 objects detected at [b] > 15deg and with significance > 4.8-delta. One source remains unidentified. These same X-ray data have allowed measurement of the X-ray properties of the objects. We fit a power law to the logN - log S distribution, and find the slope to be 1.42+/-0.14. Characterizing the differential luminosity function data as a broken power law, we find a break luminosity logL*(ergs/s)= 43.85+/-0.26. We obtain a mean photon index 1.98 in the 14-195 keV band, with an rms spread of 0.27. Integration of our luminosity function gives a local volume density of AGN above 10(exp 41) erg/s of 2.4x10(exp -3) Mpc(sup -3), which is about 10% of the total luminous local galaxy density above M* = -19.75. We have obtained X-ray spectra from the literature and from Swift XRT follow-up observations. These show that the distribution of log nH is essentially flat from nH = 10(exp 20)/sq cm to 10(exp 24)/sq cm, with 50% of the objects having column densities of less than 10(exp 22)/sq cm. BAT Seyfert galaxies have a median redshift of 0.03, a maximum log luminosity of 45.1, and approximately half have log nH > 22.

Tueller, J.↗

Integrable Variable Dissipation Systems on the Tangent Bundle of a Multi-Dimensional Sphere and Some Applications

This paper is a survey of integrable cases in dynamics of a multi-dimensional rigid body under the action of a nonconservative force field. We review both new results and results obtained earlier. Problems examined are described by dynamical systems with so-called variable dissipation with zero mean. The problem of the search for complete sets of transcendental first integrals of systems with dissipation is quite topical; a large number of works are devoted to it. We introduce a new class of dynamical systems that have a periodic coordinate. Due to the existence of nontrivial symmetry groups of such systems, we can prove that these systems possess variable dissipation with zero mean, which means that on the average for a period with respect to the periodic coordinate, the dissipation in the system is equal to zero, although in various domains of the phase space, either energy pumping or dissipation can occur. Based on the facts obtained, we analyze dynamical systems that appear in the dynamics of a multi-dimensional rigid body and obtain a series of new cases of complete integrability of the equations of motion in transcendental functions, which can be expressed through a finite combination of elementary functions. As applications, we study dynamical equations of motion arising in the study of the plane and spatial dynamics of a rigid body interacting with a medium and also a possible generalization of the obtained methods to the study of general systems arising in the qualitative theory of ordinary differential equations, in the theory of dynamical systems, and also in oscillation theory.

97 MATHEMATICS AND COMPUTING↗

Heavy-light mesons on the light front

Abstract We study the heavy-light mesons within basis light-front quantization. The resulting mass spectra of D , $$D_s$$ D s , B , and $$B_s$$ B s agree reasonably well with experiments. We also predict states which could be measured in the near future. In the light-front formalism, we calculate the light-front wave functions and additional experimental observables, such as parton distribution functions, distribution amplitudes, and decay constants by means of integrations over light-front wave functions. We also provide ratios of decay constants for selected pseudoscalar meson decays ( $$D_s$$ D s to D and $$B_s$$ B s to B ) as they may prove to be theoretically more robust and more reliably determined in experiments. We find that our ratios are systematically smaller than existing experiments and other approaches by 5–18%.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗