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At least 1,459 records · Page 81
All sourcesNASA NTRSDOE OSTI
DOE OSTI2023

Coupling Environmental Whole Mixture Toxicity Screening with Unbiased RNA-Seq Reveals Site-Specific Biological Responses in Zebrafish

Passive sampling device (PSD) extracts paired with developmental toxicity assays in Danio Rerio (zebrafish) are excellent sensors for whole mixture toxicity associated with the bioavailable non-polar organics at environmental sites. We expand this concept by incorporating RNA-Seq in 48-h post fertilization zebrafish statically exposed to PSD extracts from two Portland Harbor Superfund Site locations: river mile 6.5W (RM 6.5W) and river mile 7W (RM 7W). RM 6.5W contained higher concentrations of polycyclic aromatic hydrocarbons (PAHs), but the diagnostic ratios of both extracts indicated similar PAH sourcing and composition. Developmental screens determined RM 6.5W to be more toxic with the most sensitive endpoint being a “wavy” notochord malformation. Differential gene expression from exposure to both extracts was largely parallel, although more pronounced for RM 6.5W. When compared to the gene expression associated with individual chemical exposures, PSD extracts produced some gene signatures parallel to PAHs but were more closely matched by oxygenated-PAHs. Additionally, differential expression, reminiscent of the wavy notochord phenotype, was not accounted for by either class of chemical, indicating the potential of other contaminants driving mixture toxicity. These techniques offer a compelling method for non-targeted hazard characterization of whole mixtures in an in vivo vertebrate system without requiring complete chemical characterization.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2024

Simulation-Based Assessment of Energy Consumption of Alternative Powertrains in Agricultural Tractors

The objectives of this research were to develop simulation models for agricultural tractors with different powertrain technologies and evaluate the energy consumption in typical agricultural operations. Simulation models were developed for conventional, parallel hybrid electric, series hybrid electric, fuel cell hybrid, and battery electric powertrains. Autonomie vehicle simulation software (version 2022) was used for the simulations and the tractor models were simulated in two tilling cycles and in a road transport cycle with a trailer. The alternative powertrains were configured to have at least the same tractive performance as the conventional, diesel engine-powered tractor model. The simulation results showed that the potential of the parallel and series hybrid powertrains to improve energy efficiency depends heavily on the tractor size and the operating cycle conditions. The fuel cell hybrid and battery electric powertrains have a higher potential to reduce energy consumption and emissions but still have inherent technical challenges for practical operation. The battery-powered electric tractor would require improvements in the storage energy density to have a comparable operational performance in comparison to other powertrains. The fuel cell hybrid tractor already provided an adequate operating performance but the availability of hydrogen and refueling infrastructure could be challenging to resolve in the farming context.

32 ENERGY CONSERVATION, CONSUMPTION, AND UTILIZATI↗
DOE OSTI2020

Discovery of Extended Tidal Tails around the Globular Cluster Palomar 13

We use photometry from the DECam Legacy Survey to detect candidate tidal tails extending ~5° on either side of the Palomar 13 globular cluster. The tails are aligned with the proper motion of Palomar 13 and are consistent with its old, metal-poor stellar population. We identify three RR Lyrae stars (RRLs) that are plausibly associated with the tails, in addition to four previously known in the cluster. From these RRLs, we find that the mean distance to the cluster and tails is 23.6 ± 0.2 kpc and estimate the total (initial) luminosity of the cluster to be , consistent with previous claims that its initial luminosity was higher than its current luminosity. Combined with previously determined proper motion and radial velocity measurements of the cluster, we find that Palomar 13 is on a highly eccentric orbit (e ~ 0.8) with a pericenter of ~9 kpc and an apocenter of ~69 kpc, and a recent pericentric passage of the cluster ~75 Myr ago. We note a prominent linear structure in the interstellar dust map that runs parallel to the candidate tidal features, but conclude that reddening due to dust is unlikely to account for the structure that we observe. If confirmed, the Palomar 13 stellar stream would be one of very few streams with a known progenitor system, making it uniquely powerful for studying the disruption of globular clusters, the formation of the stellar halo, and the distribution of matter within our Galaxy.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2021

Dependence of Solar Wind Proton Temperature on the Polarization Properties of Alfvénic Fluctuations at Ion-kinetic Scales

In this work, we use fluctuating magnetic helicity to investigate the polarization properties of Alfvénic fluctuations at ion-kinetic scales in the solar wind as a function of β p , the ratio of proton thermal pressure to magnetic pressure, and θ vB , the angle between the proton flow and local mean magnetic field, B 0 . Using almost 15 yr of Wind observations, we separate the contributions to helicity from fluctuations with wavevectors, k, quasi-parallel and oblique to B 0 , finding that the helicity of Alfvénic fluctuations is consistent with predictions from linear Vlasov theory. This result suggests that the nonlinear turbulent fluctuations at these scales share at least some polarization properties with Alfvén waves. Furthermore, we also investigate the dependence of proton temperature in the β p –θ vB plane to probe for possible signatures of turbulent dissipation, finding that it correlates with θ vB . The proton temperature parallel to B 0 is higher in the parameter space where we measure the helicity of right-handed Alfvénic fluctuations, and the temperature perpendicular to B 0 is higher where we measure left-handed fluctuations. This finding is inconsistent with the general assumption that by sampling different θ vB in the solar wind we can analyze the dependence of the turbulence distribution on θ kB , the angle between k and B 0 . After ruling out both instrumental and expansion effects, we conclude that our results provide new evidence for the importance of local kinetic processes that depend on θ vB in determining proton temperature in the solar wind.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2021

Circumbinary Disk Accretion into Spinning Black Hole Binaries

Supermassive black hole binaries are likely to accrete interstellar gas through a circumbinary disk. Shortly before merger, the inner portions of this circumbinary disk are subject to general relativistic effects. To study this regime, we approximate the spacetime metric of close orbiting black holes by superimposing two boosted Kerr–Schild terms. After demonstrating the quality of this approximation, we carry out very long-term general relativistic magnetohydrodynamic simulations of the circumbinary disk. We consider black holes with spin dimensionless parameters of magnitude 0.9, in one simulation parallel to the orbital angular momentum of the binary, but in another anti-parallel. These are contrasted with spinless simulations. We find that, for a fixed surface mass density in the inner circumbinary disk, aligned spins of this magnitude approximately reduce the mass accretion rate by 14% and counter-aligned spins increase it by 45%, leaving many other disk properties unchanged.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2022

Slow Shock Formation Upstream of Reconnecting Current Sheets

The formation, development, and impact of slow shocks in the upstream regions of reconnecting current layers are explored. Slow shocks have been documented in the upstream regions of magnetohydrodynamic (MHD) simulations of magnetic reconnection as well as in similar simulations with the kglobal kinetic macroscale simulation model. They are therefore a candidate mechanism for preheating the plasma that is injected into the current layers that facilitate magnetic energy release in solar flares. Of particular interest is their potential role in producing the hot thermal component of electrons in flares. During multi-island reconnection, the formation and merging of flux ropes in the reconnecting current layer drives plasma flows and pressure disturbances in the upstream region. These pressure disturbances steepen into slow shocks that propagate along the reconnecting component of the magnetic field and satisfy the expected Rankine–Hugoniot jump conditions. Plasma heating arises from both compression across the shock and the parallel electric field that develops to maintain charge neutrality in a kinetic system. Shocks are weaker at lower plasma β, where shock steepening is slow. While these upstream slow shocks are intrinsic to the dynamics of multi-island reconnection, their contribution to electron heating remains relatively minor compared with that from Fermi reflection and the parallel electric fields that bound the reconnection outflow.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2022

Galaxy Alignments with Surrounding Structure in the Sloan Digital Sky Survey

Using data from the Sloan Digital Sky Survey Legacy Survey, we study the alignment of luminous galaxies with spectroscopic data with the surrounding larger-scale structure as defined by galaxies with only photometric data. We find that galaxies from the red sequence have a statistically significant tendency for their apparent long axes to align parallel to the projected surrounding structure. Red galaxies more luminous than the median of our sample (M r < –21.78) have a mean alignment angle $\langle$Φ$\rangle$ < 45°, indicating preferred parallel alignment, at a significance level >4.5σ on projected scales 0.1 Mpc < r p ≤ 7.5 Mpc. Fainter red galaxies have $\langle$Φ$\rangle$ < 45° at a significance level >4.3σ at scales 1 Mpc < r p < 3 Mpc. At a projected scale r p = 3.0 Mpc, the mean alignment angle decreases steadily with increasing luminosity for red galaxies with M r ≲ –22.5, reaching $\langle$Φ$\rangle$ = 40$^{°}_{.}$49 ± 0$^{°}_{.}$56 for the most luminous 1% (M r ~ –23.57). Galaxies from the blue sequence show no statistically significant tendency for their axes to align with larger-scale structure, regardless of galaxy luminosity. Galaxies in higher-density regions do not show a statistically significant difference in the mean alignment angle from galaxies in lower-density regions; this holds true for the faint blue, luminous blue, faint red, and luminous red subsets.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2023

On the Short-scale Spatial Variability of Electron Inflows in Electron-only Magnetic Reconnection in the Turbulent Magnetosheath Observed by MMS

We investigate the detailed properties of electron inflow in an electron-only reconnection event observed by the four Magnetospheric Multiscale (MMS) spacecraft in the Earth's turbulent magnetosheath downstream of the quasi-parallel bow shock. The lack of ion coupling was attributed to the small-scale sizes of the current sheets, and the observed bidirectional super-Alfvénic electron jets indicate that the MMS spacecraft crossed the reconnecting current sheet on both sides of an active X-line. Remarkably, the MMS spacecraft observed the presence of large asymmetries in the two electron inflows, with the inflows (normal to the current sheet) on the two sides of the reconnecting current layer differing by as much as a factor of four. Furthermore, even though the four MMS spacecraft were separated by less than seven electron skin depths, the degree of inflow asymmetry was significantly different at the different spacecraft. The asymmetry in the inflow speeds was larger with increasing distances downstream from the reconnection site, and the asymmetry was opposite on the two sides of the X-line. We compare the MMS observations with a 2D kinetic particle-in-cell (PIC) simulation and find that the asymmetry in the inflow speeds stems from in-plane currents generated via the combination of reconnection-mediated inflows and parallel flows along the magnetic separatrices in the presence of a large guide field.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2024

Electron Heating in the Transrelativistic Perpendicular Shocks of Tilted Accretion Flows

Abstract General relativistic magnetohydrodynamic (GRMHD) simulations of black hole tilted disks—where the angular momentum of the accretion flow at large distances is misaligned with respect to the black hole spin—commonly display standing shocks within a few to tens of gravitational radii from the black hole. In GRMHD simulations of geometrically thick, optically thin accretion flows, applicable to low-luminosity sources like Sgr A* and M87*, the shocks have transrelativistic speed, moderate plasma beta (the ratio of ion thermal pressure to magnetic pressure is β pi1 ∼ 1–8), and low sonic Mach number (the ratio of shock speed to sound speed is M s ∼ 1–6). We study such shocks with 2D particle-in-cell simulations, and we quantify the efficiency and mechanisms of electron heating for the special case of preshock magnetic fields perpendicular to the shock direction of propagation. We find that the postshock electron temperature T e2 exceeds the adiabatic expectation T e2,ad by an amount T e 2 / T e 2 , ad − 1 ≃ 0.0016 M s 3.6 , nearly independent of the plasma beta and of the preshock electron-to-ion temperature ratio T e1 / T i1 , which we vary from 0.1 to unity. We investigate the heating physics for M s ∼ 5–6 and find that electron superadiabatic heating is governed by magnetic pumping at T e1 / T i1 = 1, whereas heating by B -parallel electric fields (i.e., parallel to the local magnetic field) dominates at T e1 / T i1 = 0.1. Our results provide physically motivated subgrid prescriptions for electron heating at the collisionless shocks seen in GRMHD simulations of black hole accretion flows.

Astronomy & Astrophysics↗
DOE OSTI2024

Cholla-MHD: An Exascale-capable Magnetohydrodynamic Extension to the Cholla Astrophysical Simulation Code

Abstract We present an extension of the massively parallel, GPU native, astrophysical hydrodynamics code Cholla to magnetohydrodynamics (MHD). Cholla solves the ideal MHD equations in their Eulerian form on a static Cartesian mesh utilizing the Van Leer + constrained transport integrator, the HLLD Riemann solver, and reconstruction methods at second and third order. Cholla’s MHD module can perform ≈260 million cell updates per GPU-second on an NVIDIA A100 while using the HLLD Riemann solver and second order reconstruction. The inherently parallel nature of GPUs combined with increased memory in new hardware allows Cholla’s MHD module to perform simulations with resolutions ∼500 3 cells on a single high-end GPU (e.g., an NVIDIA A100 with 80 GB of memory). We employ GPU direct Message Passing Interface to attain excellent weak scaling on the exascale supercomputer Frontier, while using 74,088 GPUs and simulating a total grid size of over 7.2 trillion cells. A suite of test problems highlights the accuracy of Cholla’s MHD module and demonstrates that zero magnetic divergence in solutions is maintained to round off error. We also present new testing and CI tools using GoogleTest, GitHub Actions, and Jenkins that have made development more robust and accurate and ensure reliability in the future.

Astronomy & Astrophysics↗
DOE OSTI2024

A Model for Pair Production Limit Cycles in Pulsar Magnetospheres

Abstract It was recently proposed that the electric field oscillation as a result of self-consistent e ± pair production may be the source of coherent radio emission from pulsars. Direct particle-in-cell simulations of this process have shown that the screening of the parallel electric field by this pair cascade manifests as a limit cycle, as the parallel electric field is recurrently induced when pairs produced in the cascade escape from the gap region. In this work, we develop a simplified time-dependent kinetic model of e ± pair cascades in pulsar magnetospheres that can reproduce the limit-cycle behavior of pair production and electric field screening. This model includes the effects of a magnetospheric current, the escape of e ± , as well as the dynamic dependence of pair production rate on the plasma density and energy. Using this simple theoretical model, we show that the power spectrum of electric field oscillations averaged over many limit cycles is compatible with the observed pulsar radio spectrum.

Astronomy & Astrophysics↗
DOE OSTI2024

Fully Kinetic Simulations of Proton-beam-driven Instabilities from Parker Solar Probe Observations

The expanding solar wind plasma ubiquitously exhibits anisotropic nonthermal particle velocity distributions. Typically, proton velocity distribution functions (VDFs) show the presence of a core and a field-aligned beam. Novel observations made by the Parker Solar Probe (PSP) in the innermost heliosphere have revealed new complex features in the proton VDFs, namely anisotropic beams that sometimes experience perpendicular diffusion. In this study, we use a 2.5D fully kinetic simulation to investigate the stability of proton VDFs with anisotropic beams observed by PSP. Our setup consists of a core and an anisotropic beam population that drift with respect to each other. This configuration triggers a proton beam instability from which nearly parallel fast magnetosonic modes develop. Our results demonstrate that before this instability reaches saturation, the waves resonantly interact with the beam protons, causing perpendicular heating at the expense of the parallel temperature.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2024

Regulation of Solar Wind Electron Temperature Anisotropy by Collisions and Instabilities

Abstract Typical solar wind electrons are modeled as being composed of a dense but less energetic thermal “core” population plus a tenuous but energetic “halo” population with varying degrees of temperature anisotropies for both species. In this paper, we seek a fundamental explanation of how these solar wind core and halo electron temperature anisotropies are regulated by combined effects of collisions and instability excitations. The observed solar wind core/halo electron data in ( β ∥ , T ⊥ / T ∥ ) phase space show that their respective occurrence distributions are confined within an area enclosed by outer boundaries. Here, T ⊥ / T ∥ is the ratio of perpendicular and parallel temperatures and β ∥ is the ratio of parallel thermal energy to background magnetic field energy. While it is known that the boundary on the high- β ∥ side is constrained by the temperature anisotropy-driven plasma instability threshold conditions, the low- β ∥ boundary remains largely unexplained. The present paper provides a baseline explanation for the low- β ∥ boundary based upon the collisional relaxation process. By combining the instability and collisional dynamics it is shown that the observed distribution of the solar wind electrons in the ( β ∥ , T ⊥ / T ∥ ) phase space is adequately explained, both for the “core” and “halo” components.

Yoon, Peter H. (ORCID:0000000181343790)↗
DOE OSTI2025

Simultaneous Observation of Ion-scale Wave Packets with Opposite Polarizations and Their Implications on the Generation Region in the Inner Heliosphere

This paper reports a dispersion analysis of two wave packets simultaneously observed near the local proton gyrofrequency by the Parker Solar Probe. The observed wave event exhibits clear two-banded wave packets both propagating along the magnetic field, characterized by left-handed (L-mode) and right-handed (R-mode) polarizations simultaneously. By incorporating the Doppler shift effect into a linear dispersion analysis, we find two possible scenarios that explain these simultaneous opposite polarizations: (1) Two inherently L-mode waves in the plasma frame, propagate parallel and antiparallel to the solar wind velocity, with similar wave frequencies and wave numbers. The polarization of the antiparallel propagating wave reverses as it moves sunward in the plasma frame while still comoving with the solar wind in the stationary frame. This reversal manifests the polarization of the wave as an R-mode in the spacecraft frame. (2) Simultaneous L-mode and R-mode waves propagate parallel to the solar wind velocity, with different wave frequencies and wave numbers. Concurrent proton observations during the wave event reveal a dominant anisotropic ($T$⟂/$T$ ∥ > 1) core distribution with a drifting beam population. Estimation of the linear growth rate for both L-mode and R-mode waves suggests that both scenarios are plausible, indicating that the observation is near the wave-generation region. We explore the potential impact of these simultaneous waves on solar wind heating and scattering effects, hypothesizing that such waves might enhance efficiency compared to waves with a single wave packet, contingent upon the statistical significance of such waves.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2025

Temporal Properties of Compressible Magnetohydrodynamic Turbulence

Describing the temporal properties of compressible magnetohydrodynamic (MHD) turbulence is a fundamental problem that has important implications for particle acceleration and transport in astrophysical plasmas. Here, by carefully analyzing the spatial and temporal properties of compressible MHD turbulence, we derive a new spectral power density function that is supported by simulations. This new function reveals that the low-frequency fluctuations are dominated by modes with small parallel wavenumbers with respect to the mean background magnetic field. Furthermore, for fluctuations with dynamically significant parallel wavenumbers, broadening around their eigenfrequencies is described by this function, which is in close agreement with simulations. We use this formalism to present the scaling properties of individual MHD modes. Such broadening is a direct consequence of nonlinear processes and is different for the three fundamental MHD modes. Our results provide a new window to investigate the temporal properties of turbulence and will enable further studies on the interaction between compressible MHD turbulence and energetic plasmas.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2020

The Athena++ Adaptive Mesh Refinement Framework: Design and Magnetohydrodynamic Solvers

The design and implementation of a new framework for adaptive mesh refinement calculations are described. It is intended primarily for applications in astrophysical fluid dynamics, but its flexible and modular design enables its use for a wide variety of physics. The framework works with both uniform and nonuniform grids in Cartesian and curvilinear coordinate systems. It adopts a dynamic execution model based on a simple design called a "task list" that improves parallel performance by overlapping communication and computation, simplifies the inclusion of a diverse range of physics, and even enables multiphysics models involving different physics in different regions of the calculation. We describe physics modules implemented in this framework for both nonrelativistic and relativistic magnetohydrodynamics (MHD). These modules adopt mature and robust algorithms originally developed for the Athena MHD code and incorporate new extensions: support for curvilinear coordinates, higher-order time integrators, more realistic physics such as a general equation of state, and diffusion terms that can be integrated with super-time-stepping algorithms. The modules show excellent performance and scaling, with well over 80% parallel efficiency on over half a million threads. The source code has been made publicly available.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2021

GR-Athena++: Puncture Evolutions on Vertex-centered Oct-tree Adaptive Mesh Refinement

Numerical relativity is central to the investigation of astrophysical sources in the dynamical and strong-field gravity regime, such as binary black hole and neutron star coalescences. Current challenges set by gravitational-wave and multimessenger astronomy call for highly performant and scalable codes on modern massively parallel architectures. We present GR-Athena++, a general-relativistic, high-order, vertex-centered solver that extends the oct-tree, adaptive mesh refinement capabilities of the astrophysical (radiation) magnetohydrodynamics code Athena++. To simulate dynamical spacetimes, GR-Athena++ uses the Z4c evolution scheme of numerical relativity coupled to the moving puncture gauge. We demonstrate stable and accurate binary black hole merger evolutions via extensive convergence testing, cross-code validation, and verification against state-of-the-art effective-one-body waveforms. GR-Athena++ leverages the task-based parallelism paradigm of Athena++ to achieve excellent scalability. We measure strong-scaling efficiencies above 95% for up to ~1.2 × 10 4 CPUs and excellent weak scaling is shown up to ~10 5 CPUs in a production binary black hole setup with adaptive mesh refinement. GR-Athena++ thus allows for the robust simulation of compact binary coalescences and offers a viable path toward numerical relativity at exascale.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2025

Planar Collisionless Shock Simulations with the Semi-implicit Particle-in-cell Model FLEKS

This study investigates the applicability of the semi-implicit particle-in-cell code FLexible Exascale Kinetic Simulator (FLEKS) to heliospheric shock simulations. We examine one- and two-dimensional local planar shock simulations, initialized using MHD states with upstream conditions representative of plasmas in the hypersonic, β ∼ 1 regime, for both quasi-perpendicular and quasi-parallel configurations. The refined algorithm in FLEKS proves robust, enabling accurate shock simulations with a grid resolution on the order of the electron inertial length d e . Our simulations successfully capture key shock features, including shock structures (foot, ramp, overshoot, and undershoot), upstream and downstream waves (fast magnetosonic, whistler, Alfvén ion-cyclotron, and mirror modes), and non-Maxwellian particle distributions. Crucially, we find that at least two spatial dimensions are critical for accurately reproducing downstream-wave physics in quasi-perpendicular shocks and capturing the complex dynamics of quasi-parallel shocks, including surface rippling, shocklets, short, large-amplitude magnetic structures, magnetic reconnection, and jets. Furthermore, our parameter studies demonstrate the impact of mass ratio and grid resolution on shock physics. This work provides valuable guidance for selecting appropriate physical and numerical parameters for shock simulations using a semi-implicit PIC method, paving the way for incorporating kinetic shock processes into large-scale collisionless plasma simulations with the MHD-AEPIC model.

plasma astrophysics↗