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NASA NTRS2003

Model-Data Assimilation of Internal Waves during ASIAEX-2001

In recent Asian Seas International Acoustics Experiment (ASIAEX), extensive moorings have been deployed around the continental shelf break area in the northeast of South China Sea in May 2001. Simultaneous RADARSAT SAR images have been collected during the field test to integrate with the in-situ measurements from moorings, ship-board sensors, and CTD casts. Besides it provides synoptic information, satellite imagery is very useful for tracking the internal waves, and locating surface fronts and mesoscale features. During ASIAEX in May 2001, many large internal waves were observed at the test area and were the major oceanic features for acoustic volume interaction. Based on the internal wave distribution maps compiled from satellite data, the wave crest can be as long as 200 km with amplitude of 100 m. Environmental parameters have been calculated based on extensive CTD casts data near the ASIAEX area. Nonlinear internal wave models have been applied to integrate and assimilate both SAR and mooring data. Using SAR data in deep water as an initial condition, numerical simulations produce the wave evolution on the continental shelf and compared reasonably well with the mooring measurements at the downstream station. The shoaling, turning, and dissipation of large internal waves on the shelf break, elevation solitons, and wave-wave interaction have been studied and are very important issues for acoustic propagation. The internal wave effects on acoustic modal coupling has been implicated and discussed.

Liu, Antony↗
NASA NTRS2003

GRB 011121: A Collimated Outflow into Wind-Blown Surroundings

We report optical and near-infrared follow-up observations of GRB 011121 collected predominantly at ESO telescopes in Chile. We discover a break in the afterglow light curve after 1.3 days, which implies an initial jet opening angle of about 9 deg. The jet origin of this break is supported by the fact that the spectral energy distribution is achromatic during the first four days. During later phases, GRB 011121 shows significant excess emission above the flux predicted by a power law, which we interpret as additional light from an underlying supernova. In particular, the spectral energy distribution of the optical transient approximately 2 weeks after the burst is clearly not of power-law type, but can be presented by a black body with a temperature of approx. 6000 K. The deduced parameters for the decay slope as well as the spectral index favor a wind scenario, i.e. an outflow into a circum-burst environment shaped by the stellar wind of a massive GRB progenitor. Due to its low redshift of z=0.36, GRB 011121 has been the best example for the GRB-supernova connection until GRB 030329, and provides compelling evidence for a circum-burster wind region expected to exist if the progenitor was a massive star.

Greiner, J.↗
NASA NTRS2003

The Radio Afterglow of GRB030329 at Centimetre Wavelengths: Evidence for Multiple Jets or a Structured Jet

We present our centimetre wavelength (1.4, 2.3 and 4.9 GHz) light curves of the afterglow of GRB030329, which were obtained with the Westerbork Synthesis Radio Telescope. Modelling the data according to a collimated afterglow results in a jet-break time t(sub j) of 17 days. This is in contrast with earlier results obtained at higher frequencies, which indicate t(sub j) to be around 10 days. Furthermore, with respect to the afterglow model, some additional flux at the lower frequencies is present when these light curves reach their maximum. We subsequently show that the afterglow can be modelled with two or more components with progressively later jet breaks. From these results we infer that the jet is in fact a structured or a layered jet, where the ejecta with lower Lorentz factors produce additional flux which becomes visible at late times in the lowest frequency bands.

Rol, E.↗
NASA NTRS2003

The Achromatic Light Curve of the Optical Afterglow of GRB 030226 at a Redshift of z Approximately 2

Abstract. We report on optical and near-infrared (NIR) follow-up observations of the afterglow of GRB 030226, mainly performed with the telescopes at ESO La Silla and Paranal, with additional data obtained at other places. Our first observations started 0.2 days after the burst when the afterglow was at a magnitude of R approximately equal to 19 . One week later the magnitude of the afterglow had fallen to R=25, and at two weeks after the burst it could no longer be detected (R > 26). Our VLT blueband spectra show two absorption line systems at redshifts z = 1.962 +/- 0.001 and at z = 1.986 +/- 0.001, placing the redshift of the burster close to 2. Within our measurement errors no evidence for variations in the line strengths has been found between 0.2 and 1.2 days after the burst. An overabundance of alpha-group elements might indicate that the burst occurred in a chemically young interstellar region shaped by the nucleosynthesis from type II supernovae. The spectral slope of the afterglow shows no signs for cosmic dust along the line of sight in the GRB host galaxy, which itself remained undetected (R > 26.2). At the given redshift no supernova component affected the light from the GRB afterglow, so that the optical transient was essentially only powered by the radiation from the GRB fireball, allowing for a detailed investigation of the color evolution of the afterglow light. In our data set no obvious evidence for color changes has been found before, during, or after the smooth break in the light curve approximately 1 day after the burst. In comparison with investigations by others, our data favor the interpretation that the afterglow began to develop into a homogeneous interstellar medium before the break in the light curve became apparent.

Klose, S.↗
NASA NTRS2004

Ionization Cross Sections and Dissociation Channels of DNA Bases by Electron Collisions

Free secondary electrons are the most abundant secondary species in ionizing radiation. Their role in DNA damage, both direct and indirect, is an active area of research. While indirect damage by free radicals, particularly by the hydroxyl radical generated by electron collision with water. is relatively well studied, damage by direct electron collision with DNA is less well understood. Only recently Boudaiffa et al. demonstrated that electrons at energies well below ionization thresholds can induce substantial yields of single- and double-strand breaks in DNA by a resonant, dissociative attachment process. This study attracted renewed interest in electron collisions with DNA, especially in the low energy region. At higher energies ionization becomes important. While Monte Carlo track simulations of radiation damage always include ionization, the probability of dissociative ionization, i.e., simultaneous ionization and dissociation, is ignored. Just like dissociative attachment, dissociative ionization may be an important contributor to double-strand breaks since the radicals and ions produced by dissociative ionization, located in the vicinity of the DNA coil, can readily interact with other parts of the DNA. Using the improved binary-encounter dipole (iBED) formulation, we calculated the ionization cross sections of the four DNA bases, adenine, cytosine, guanine, and thymine, by electrons at energies from threshold to 1 KeV. The present calculation gives cross sections approximately 20% lower than the results by Bemhardt and Paretzke using the Deutsch-Mark and Binary-Encounter-Bethe (BEB) formalisms. The difference is most likely due to the lack of a shielding term in the dipole potential used in the Deutsch-Mark and BEB formalisms. The dissociation channels of ionization for the bases are currently being studied.

Huo, Winifred M.↗
NASA NTRS2004

Ionization Cross Sections and Dissociation Channels of the DNA Sugar-Phosphate Backbone by Electron Collisions

It has been suggested that the genotoxic effects of ionizing radiation in living cells are not caused by the highly energetic incident radiation, but rather are induced by less energetic secondary species generated, the most abundant of which are free electrons.' The secondary electrons will further react to cause DNA damage via indirect and direct mechanisms. Detailed knowledge of these mechanisms is ultimately important for the development of global models of cellular radiation damage. We are studying one possible mechanism for the formation cf DNA strand breaks involving dissociative ionization of the DNA sugar-phosphate backbone induced by secondary electron co!lisions. We will present ionization cross sections at electron collision energies between threshold and 10 KeV using the improved binary encounter dipole (iBED) formulation' Preliminary results of the possible dissociative ionization pathways will be presented. It is speculated that radical fragments produced from the dissociative ionization can further react, providing a possible mechanism for double strand breaks and base damage.

Dateo, Christopher↗
NASA NTRS2004

Probing a GRB Progenitor at a Redshift of z=2: A Comprehensive Observing Campaign of the Afterglow of GRB 030226l

We report results from a comprehensive optical/near-infrared follow-up observing campaign of the afterglow of GRB 030226, including VLT spectroscopy and polarimetry, supplemented by Chandra X-ray and BOOTES-1 rapid response observations. First observations at ESO started 0.2 days after the burst when the afterglow was at a magnitude of R approx. 19. The multi-color light curve of the afterglow, with a break around 1 day after the burst, is achromatic within the observational uncertainties even during episodes of short-term fluctuations. Close to the break time the degree of linear polarization of the afterglow light was less than 1.1%, consistent with low intrinsic polarization observed in other afterglows. VLT spectra show a foreground absorber of Mg II at a redshift z=1.042 and two absorption line systems at redshifts z=1.962+/-0.001 and at z=1.986+/-0.001, placing the lower limit for the redshift of the GRB close to 2. The kinematics and the composition of the absorbing clouds is very similar to those observed in the afterglow of GRB 021004, supporting the view that at least some GRBs are physically related to the explosion of a Wolf-Rayet star.

Klose, S.↗
NASA NTRS2004

Low Earth Orbital Atomic Oxygen Interactions With Materials

Atomic oxygen is formed in the low Earth orbital environment (LEO) by photo dissociation of diatomic oxygen by short wavelength (< 243 nm) solar radiation which has sufficient energy to break the 5.12 eV O2 diatomic bond in an environment where the mean free path is sufficiently long (~ 108 meters) that the probability of reassociation or the formation of ozone (O3) is small. As a consequence, between the altitudes of 180 and 650 km, atomic oxygen is the most abundant species. Spacecraft impact the atomic oxygen resident in LEO with sufficient energy to break hydrocarbon polymer bonds, causing oxidation and thinning of the polymers due to loss of volatile oxidation products. Mitigation techniques, such as the development of materials with improved durability to atomic oxygen attack, as well as atomic oxygen protective coatings, have been employed with varying degrees of success to improve durability of polymers in the LEO environment. Atomic oxygen can also oxidize silicones and silicone contamination to produce non-volatile silica deposits. Such contaminants are present on most LEO missions and can be a threat to performance of optical surfaces. The LEO atomic oxygen environment, its interactions with materials, results of space testing, computational modeling, mitigation techniques, and ground laboratory simulation procedures and issues are presented.

Banks, Bruce A.↗
NASA NTRS2003

Quantifying clustered DNA damage induction and repair by gel electrophoresis, electronic imaging and number average length analysis

Assessing DNA damage induction, repair and consequences of such damages requires measurement of specific DNA lesions by methods that are independent of biological responses to such lesions. Lesions affecting one DNA strand (altered bases, abasic sites, single strand breaks (SSB)) as well as damages affecting both strands (clustered damages, double strand breaks) can be quantified by direct measurement of DNA using gel electrophoresis, gel imaging and number average length analysis. Damage frequencies as low as a few sites per gigabase pair (10(9)bp) can be quantified by this approach in about 50ng of non-radioactive DNA, and single molecule methods may allow such measurements in DNA from single cells. This review presents the theoretical basis, biochemical requirements and practical aspects of this approach, and shows examples of their applications in identification and quantitation of complex clustered damages.

NASA Program Biological Systems Research↗
NASA NTRS2002

Anaerobic conditions improve germination of a gibberellic acid deficient rice

Dwarf plants are useful in research because multiple plants can be grown in a small area. Rice (Oryza sativa L.) is especially important since its relatively simple genome has recently been sequenced. We are characterizing a gibberellic acid (GA) mutant of rice (japonica cv 'Shiokari,' line N-71) that is extremely dwarf (20 cm tall). Unfortunately, this GA mutation is associated with poor germination (70%) under aerobic conditions. Neither exogenous GA nor a dormancy-breaking heat treatment improved germination. However, 95% germination was achieved by germinating the seeds anaerobically, either in a pure N2 environment or submerged in unstirred tap water. The anaerobic conditions appear to break a mild post-harvest dormancy in this rice cultivar. Copyright 2002 Crop Science Society of America.

Non-NASA Center↗
NASA NTRS2003

Truly incomplete and complex exchanges in prematurely condensed chromosomes of human fibroblasts exposed in vitro to energetic heavy ions

Confluent human fibroblast cells (AG1522) were irradiated with gamma rays, 490 MeV/nucleon silicon ions, or iron ions at either 200 or 500 MeV/nucleon. The cells were allowed to repair at 37 degrees C for 24 h after exposure, and a chemically induced premature chromosome condensation (PCC) technique was used to condense chromosomes in the G2 phase of the cell cycle. Incomplete and complex exchanges were analyzed in the irradiated samples. To verify that chromosomal breaks were truly unrejoined, chromosome aberrations were analyzed using a combination of whole-chromosome specific probes and probes specific for the telomere region of the chromosome. Results showed that the frequency of unrejoined chromosome breaks was higher after irradiation with the heavy ions of high LET, and consequently the ratio of incomplete to complete exchanges increased steadily with LET up to 440 keV/microm, the highest LET included in the present study. For samples exposed to 200 MeV/nucleon iron ions, chromosome aberrations were analyzed using the multicolor FISH (mFISH) technique, which allows identification of both complex and truly incomplete exchanges. Results of the mFISH study showed that 0.7 and 3 Gy iron ions produced similar ratios of complex to simple exchanges and incomplete to complete exchanges; these ratios were higher than those obtained after exposure to 6 Gy gamma rays. After 0.7 Gy of iron ions, most complex aberrations were found to involve three or four chromosomes, which is a likely indication of the maximum number of chromosome domains traversed by a single iron-ion track.

NASA Discipline Radiation Health↗
NASA NTRS2002

Clustered DNA damages induced in human hematopoietic cells by low doses of ionizing radiation

Ionizing radiation induces clusters of DNA damages--oxidized bases, abasic sites and strand breaks--on opposing strands within a few helical turns. Such damages have been postulated to be difficult to repair, as are double strand breaks (one type of cluster). We have shown that low doses of low and high linear energy transfer (LET) radiation induce such damage clusters in human cells. In human cells, DSB are about 30% of the total of complex damages, and the levels of DSBs and oxidized pyrimidine clusters are similar. The dose responses for cluster induction in cells can be described by a linear relationship, implying that even low doses of ionizing radiation can produce clustered damages. Studies are in progress to determine whether clusters can be produced by mechanisms other than ionizing radiation, as well as the levels of various cluster types formed by low and high LET radiation.

NASA Discipline Radiation Health↗
NASA NTRS2002

Silencing expression of the catalytic subunit of DNA-dependent protein kinase by small interfering RNA sensitizes human cells for radiation-induced chromosome damage, cell killing, and mutation

Targeted gene silencing in mammalian cells by RNA interference (RNAi) using small interfering RNAs (siRNAs) was recently described by Elbashir et al. (S. M. Elbashir et al., Nature (Lond.), 411: 494-498, 2001). We have used this methodology in several human cell strains to reduce expression of the Prkdc (DNA-PKcs) gene coding for the catalytic subunit of the DNA-dependent protein kinase (DNA-PKcs) that is involved in the nonhomologous end joining of DNA double-strand breaks. We have also demonstrated a radiosensitization for several phenotypic endpoints of radiation damage. In low-passage normal human fibroblasts, siRNA knock-down of DNA-PKcs resulted in a reduced capacity for restitution of radiation-induced interphase chromosome breaks as measured by premature chromosome condensation, an increased yield of acentric chromosome fragments at the first postirradiation mitosis, and an increased radiosensitivity for cell killing. For three strains of related human lymphoblasts, DNA-PKcs-targeted siRNA transfection resulted in little or no increase in radiosensitivity with respect to cell killing, a 1.5-fold decrease in induced mutant yield in TK6- and p53-null NH32 cells, but about a 2-fold increase in induced mutant yield in p53-mutant WTK1 cells at both the hypoxanthine quanine phosphoribosyl transferase (hprt) and the thymidine kinase loci.

Non-NASA Center↗
NASA NTRS2002

Bystander effects in radiation-induced genomic instability

Exposure of GM10115 hamster-human hybrid cells to X-rays can result in the induction of chromosomal instability in the progeny of surviving cells. This instability manifests as the dynamic production of novel sub-populations of cells with unique cytogenetic rearrangements involving the "marker" human chromosome. We have used the comet assay to investigate whether there was an elevated level of endogenous DNA breaks in chromosomally unstable clones that could provide a source for the chromosomal rearrangements and thus account for the persistent instability observed. Our results indicate no significant difference in comet tail measurement between non-irradiated and radiation-induced chromosomally unstable clones. Using two-color fluorescence in situ hybridization we also investigated whether recombinational events involving the interstitial telomere repeat-like sequences in GM10115 cells were involved at frequencies higher than random processes would otherwise predict. Nine of 11 clones demonstrated a significantly higher than expected involvement of these interstitial telomere repeat-like sequences at the recombination junction between the human and hamster chromosomes. Since elevated levels of endogenous breaks were not detected in unstable clones we propose that epigenetic or bystander effects (BSEs) lead to the activation of recombinational pathways that perpetuate the unstable phenotype. Specifically, we expand upon the hypothesis that radiation induces conditions and/or factors that stimulate the production of reactive oxygen species (ROS). These reactive intermediates then contribute to a chronic pro-oxidant environment that cycles over multiple generations, promoting chromosomal recombination and other phenotypes associated with genomic instability.

NASA Discipline Radiation Health↗
NASA NTRS2000

Geology and geochemistry of paleosols developed on the Hekpoort Basalt, Pretoria Group, South Africa

The Hekpoort paleosols comprise a regional paleoweathering horizon developed on 2.224 +/- 0.021 Ga basaltic andesite lavas at the top of the Hekpoort Formation of the Pretoria Group, Transvaal Supergroup, South Africa. In five separate profiles, from outcrops along road cuts near Waterval Onder and the Daspoort Tunnel and in three drill cores from the Bank Break Area (BB3, BB8, and BB14), the top of the paleosol is a sericite-rich zone. The sericite zone grades downward into a chlorite-rich zone. In core BB8 and in the road cut at the Daspoort Tunnel, we sampled the underlying or parent basaltic andesite into which the chlorite zone grades. We did not obtain samples of the parent material at Waterval Onder and in cores BB3 and BB14, but chemical analyses indicate that the chlorite and sericite zones in these profiles derive from underlying lavas similar to the ones we sampled in core BB8 and at the Daspoort Tunnel. The presence of apparent rip-up clasts of the paleosol in the overlying ironstones of the Strubenkop Formation in the cores from Bank Break makes it very unlikely that most of the alteration was a result of interactions with hydrothermal fluids. Desiccation cracks at the top of the paleosol that were filled with sand during the deposition of the overlying sediments at Waterval Onder point to a subaerial weathering origin. Very little, if any, Al, Ti, Zr, V, or Cr moved a discernible distance during weathering of any of the five profiles. The vertical distribution of Fe, Mg, Mn, Ni, and Co indicates that these elements were largely removed from the top of the soil during weathering. The overall abundance of these elements in each of the profiles indicates that a significant fraction of the complement lost from the top subsequently reprecipitated in the lower portion of the soil as constituents of an Fe2(+) -rich smectite. The loss of Fe from the top of the soil during weathering of the Hekpoort paleosols indicates that atmospheric PO2 was less than 8 x 10(-4) atm about 2.22 Ga. Fe2(+) -rich smectite should only precipitate during soil formation if atmospheric PCO2 is less than or equal to 2 x 10(-2) atm (Rye, Kuo, and Holland, 1995). Ca and Na were largely lost during weathering. Some Na was apparently added to the sericite zone in cores BB3, BB8, and BB14 after weathering. All five profiles are enriched in K and Rb, and most are enriched in Ba. The distribution of these elements indicates that they all were added during post-weathering hydrothermal metasomatism. Rb-Sr analysis of the paleosol at the Daspoort Tunnel indicates that metasomatism last affected that profile 1.925 +/- 0.032 Ga (Macfarlane and Holland, 1991).

Non-NASA Center↗
NASA NTRS2004

Elemental Abundance Variations Observed in Solar Energetic Particle Events During Solar Cycle 23

We report on observations of the abundances of elements from Helium to Nickel in over 50 different solar energetic particle events using the Solar Isotope Spectrometer (SIS) on-board the Advanced Composition Explorer (ACE) spacecraft. It had originally been expected that the energy spectra of different elements would show spectral roll-overs at energies related to the Q/M ratio of each element. Due to the partial stripping of Fe and essentially complete stripping of O, it was expected that the Fe/O ratio would be observed to decrease with increasing energy. While many events show this pattern, others have Fe/O which is constant with energy, while for yet others Fe/O actually increases with energy. Events having constant Fe/O could simply have their spectral breaks outside of the observed energy range. However, events which show increasing Fe/O cannot be explained within the framework of spectral breaks. Possible explanations include injection of remnant heavy ions from earlier impulsive events, hybrid Events consisting of a combination of flare-accelerated and shock-accelerated particles from a single solar event, and some new physical process in shock acceleration. We will report on efforts to distinguish these possible explanations.

vonRosenvinge, T. T.↗
NASA NTRS1994

Accurate Simulation of Acoustic Emission Sources in Composite Plates

Acoustic emission (AE) signals propagate as the extensional and flexural plate modes in thin composite plates and plate-like geometries such as shells, pipes, and tubes. The relative amplitude of the two modes depends on the directionality of the source motion. For source motions with large out-of-plane components such as delaminations or particle impact, the flexural or bending plate mode dominates the AE signal with only a small extensional mode detected. A signal from such a source is well simulated with the standard pencil lead break (Hsu-Neilsen source) on the surface of the plate. For other sources such as matrix cracking or fiber breakage in which the source motion is primarily in-plane, the resulting AE signal has a large extensional mode component with little or no flexural mode observed. Signals from these type sources can also be simulated with pencil lead breaks. However, the lead must be fractured on the edge of the plate to generate an in-plane source motion rather than on the surface of the plate. In many applications such as testing of pressure vessels and piping or aircraft structures, a free edge is either not available or not in a desired location for simulation of in-plane type sources. In this research, a method was developed which allows the simulation of AE signals with a predominant extensional mode component in composite plates requiring access to only the surface of the plate.

Prosser, W. H.↗
NASA NTRS1991

AE Source Orientation by Plate Wave Analysis

Lead breaks (Hsu-Neilsen source) were used to generate simulated acoustic emission signals in an aluminum plate at angles of 0, 30, 60, and 90 degrees with respect to the plane of the plate. This was accomplished by breaking the lead on slots cut into the plate at the respective angles. The out-of-plane and in-plane displacement components of the resulting signals were detected by broad band transducers and digitized. Analysis of the waveforms showed them to consist of the extensional and flexural plate modes. The amplitude of both components of the two modes was dependent on the source orientation angle. This suggests that plate wave analysis may be used to determine the source orientation of acoustic emission sources.

Gorman, Michael R.↗