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At least 1,459 records · Page 81

Fragile Earth: AI for Climate Mitigation, Adaptation, and Environmental Justice

The Fragile EarthWorkshop is a recurring event that gathers the research community to find and explore howdata science can measure and progress climate and social issues, following the framework of the United Nations Sustainable Development Goals (SDGs).Fragile Earth 2022: AI for Climate Mitigation, Adaptation, and Environmental Justice is a workshop taking place as part of the ACM's KDD 2022 Conference on research in knowledge discovery and data mining and their applications. The dates for the Conference are August 14-18, 2022.

Abe, Naoki↗

Distributed-Memory Parallel JointNMF

Joint Nonnegative Matrix Factorization (JointNMF) is a hybrid method for mining information from datasets that contain both feature and connection information. We propose distributed-memory parallelizations of three algorithms for solving the JointNMF problem based on Alternating Nonnegative Least Squares, Projected Gradient Descent, and Projected Gauss-Newton. We extend well-known communication-avoiding algorithms using a single processor grid case to our coupled case on two processor grids. We demonstrate the scalability of the algorithms on up to 960 cores (40 nodes) with 60% parallel efficiency. The more sophisticated Alternating Nonnegative Least Squares (ANLS) and Gauss-Newton variants outperform the first-order gradient descent method in reducing the objective on large-scale problems. We perform a topic modelling task on a large corpus of academic papers that consists of over 37 million paper abstracts and nearly a billion citation relationships, demonstrating the utility and scalability of the methods.

Eswar, Srinivas↗

Noise-Resilient and Reduced Depth Approximate Adders for NISQ Quantum Computing

The "Noisy intermediate-scale quantum" NISQ machine era primarily focuses on mitigating noise, controlling errors, and executing high-fidelity operations, hence requiring shallow circuit depth and noise robustness. Approximate computing is a novel computing paradigm that produces imprecise results by relaxing the need for fully precise output for error-tolerant applications including multimedia, data mining, and image processing. We investigate how approximate computing can improve the noise resilience of quantum adder circuits in NISQ quantum computing. We propose five designs of approximate quantum adders to reduce depth while making them noise-resilient, in which three designs are with carryout, while two are without carryout. We have used novel design approaches that include approximating the Sum only from the inputs (pass-through designs) and having zero depth, as they need no quantum gates. The second design style uses a single CNOT gate to approximate the SUM with a constant depth of O(1). We performed our experimentation on IBM Qiskit on noise models including thermal, depolarizing, amplitude damping, phase damping, and bitflip: (i) Compared to exact quantum ripple carry adder without carryout the proposed approximate adders without carryout have improved fidelity ranging from 8.34% to 219.22%, and (ii) Compared to exact quantum ripple carry adder with carryout the proposed approximate adders with carryout have improved fidelity ranging from 8.23% to 371%. Further, the proposed approximate quantum adders are evaluated in terms of various error metrics.

Gaur, Bhaskar↗

The Role of Data Filtering in Open Source Software Ranking and Selection

Faced with more than 100M open source projects, a more manageable small subset is needed for most empirical investigations. More than half of the research papers in leading venues investigated filtering projects by some measure of popularity with explicit or implicit arguments that unpopular projects are not of interest, may not even represent "real" software projects, or that less popular projects are not worthy of study. However, such filtering may have enormous effects on the results of the studies if and precisely because the sought-out response or prediction is in any way related to the filtering criteria.This paper exemplifies the impact of this common practice on research outcomes, specifically how filtering of software projects on GitHub based on inherent characteristics affects the assessment of their popularity. Using a dataset of over 100,000 repositories, we used multiple regression to model the number of stars -a commonly used proxy for popularity- based on factors such as the number of commits, the duration of the project, the number of authors and the number of core developers. Our control model included the entire dataset, while a second filtered model considered only projects with ten or more authors. The results indicated that while certain characteristics of the repository consistently predict popularity, the filtering process significantly alters the relationships between these characteristics and the response. We found that the number of commits exhibited a positive correlation with popularity in the control sample but showed a negative correlation in the filtered sample. These findings highlight the potential biases introduced by data filtering and emphasize the need for careful sample selection in empirical research of mining software repositories. We recommend that empirical work should either analyze complete datasets such as World of Code, or employ stratified random sampling from a complete dataset to ensure that filtering is not biasing the results.

Malviya Thakur, Addi↗

Studying CPU and memory utilization of applications on Fujitsu A64FX and Nvidia Grace Superchip

ARM-based manycore CPU architectures are well-positioned to provide the rising memory throughput requirements of modern data intensive scientific applications in High Performance Computing (HPC). The Fujitsu A64FX CPU platform is based on the ARM v8.2A architecture, and is the processor of the flagship Japanese supercomputer - "Fugaku", which was previously ranked as the #1 supercomputer in the world according to the Top500 list. The Nvidia Grace superchip features 144 Neoverse V2 cores based on the ARMv9 architecture with 4x128b SVE2, providing exceptional computational power. The chip supports up to 480GB of memory, making it ideal for AI, machine learning, and scientific computing workloads. In this paper, we conduct a thorough performance exploration of a variety of parallel bandwidth-sensitive benchmarks and applications compiled with the native Fujitsu compiler on a Fugaku A64FX compute node and ARM (LLVM) Compiler on an NVIDIA Grace superchip compute node, engaging all the computational cores per cluster using OpenMP multithreading (assuming the cores can drive the available bandwidth). Our ultimate goals are to study the resource utilization of scientific applications and benchmarks on A64FX and Grace superchip, considering graph application scenarios ( GAP Benchmark suite) and eleven appli- cation proxies from the Rodinia heterogeneous benchmark suite (considering domains such as Data Mining, Bioinformatics, Fluid Dynamics, Pattern Recognition, etc.). Through exhaustive performance monitoring, we quantify the resource utilization of diverse OpenMP-based HPC applications on both the Fujitsu A64FX and the Nvidia Grace Superchip platforms.

benchmarking, Performance Analysis, High performan↗

From Rules to Reasoning: A Survey of Large Language Model-Based Approaches to Scientific Hypothesis and Idea Generation

Scientific hypothesis generation represents a fundamental challenge in contemporary research due to exponentially expanding literature volumes and increasing disciplinary specialization. Large language models (LLMs) have emerged as transformative tools for automated scientific discovery, moving beyond traditional rule-based and literature-mining approaches. Four paradigmatic approaches define current LLM-driven hypothesis generation: direct prompting and fine-tuning methods, knowledge-enhanced frameworks integrating retrieval-augmented generation (RAG), multi-agent collaborative systems simulating research teams, and reasoning-focused approaches implementing cognitive architectures. Domain-specific applications demonstrate statistical equivalence to human expert performance in social psychology, experimental validation in biomedical research, and near-expert quality in astronomy. Evaluation methodologies encompass human expert assessment, LLM-as-judge frameworks, and comprehensive benchmarking systems. Technical challenges include hallucination management, knowledge integration limitations, and balancing novelty with feasibility. Future directions emphasize hybrid neural-symbolic architectures and sophisticated human-AI collaboration models for responsible scientific discovery acceleration.

AI-driven discovery↗

Electrolyte Study for High-Nickel LiNi 0.9 Mn 0.05 Co 0.05 O 2 Cathodes

With an increasing demand for intermittent renewable energy and electric vehicles, it is imperative to develop lithium-ion batteries with Earth-abundant cathode materials. Cobalt (Co) is preferred to be kept at a minimum because of its high cost and limited mining options, yet it has played an essential role in the high-performance transition metal oxides (TMOs). Herein, we report work from Argonne National Laboratory, conducted under the U.S. DoE's Vehicle Technologies Office, Deep Dive consortium on Next-Generation Cathodes, to optimize electrolytes for LiNi 0.9 Mn 0.05 Co 0.05 O 2 . LiNi 0.9 Mn 0.05 Co 0.05 O 2 is a high-Ni TMO benchmark as it outperforms most other TMOs under standard cycling conditions. In this study, we use the figure-of-merit approach to optimize electrolytes for this novel cathode material. Dual-salt carbonate electrolytes containing lithium difluorooxyphosphate and hexafluorophosphates were found to be the best for capacity retention and slowing the impedance rise. Importantly, transition metal dissolution and lithium inventory losses in the solid electrolyte interface were found to be the major causes for capacity fade.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

TEAL

TEAL is a financial performance calculator plugin for the RAVEN code, framework, resolving around the computation of Net Present Value and associated financial metrics. TEAL can make use of inflation rates, taxation, escalation factors, capital expenditure economy of scale scaling factors. The unique feature of TEAL is the capability to be linked with RAVEN external models and build corresponding cash flows using the variables computed by those external models. In addition to be able to use the capability to generate cash flows derived from complex physical models generated by RAVEN, another distinctive feature of TEAL is the capability to provide financial risk/probabilistic metrics that can empower RAVEN to perform optimization/analysis driven by financial risk augmentations. Optimization, robust optimization, parametric studies, large parallel simulations, sensitivity analysis, data mining, etc. are just some of the capabilities that can be leveraged.

Alfonsi, Andrea↗

Reposcanner

SAND2023-05455O Reposcanner provides a highly modular, extensible framework for defining routines for mining data from software repositories and performing analyses on that data to yield valuable insights on team behaviors. Reposcanner features seamless support for different version control platforms like GitHub, Gitlab, and Bitbucket; smart parsing of URLs; intelligent credential management capabilities; and a comprehensive test suite. Reposcanner is connected to the Exascale Computing Project and is intended for research purposes.

Mundt, Miranda↗

Moment Tensor Inversion Toolkit

The MTINV toolkit (2002-present) is a collection of computer codes and applications written to invert for the moment tensor of a seismic source given the three components of ground motion recorded at regional seismic stations (e.g., Ichinose et al., 2003). The computer codes and workflow are organized to generate moment tensor solutions for a range of source depths and origin times because of the trade-off between these two quantities. The metric used is the variance reduction and variance reduction modulated by the percent double-couple to determine the best-fit moment-tensor solution. We can solve for a deviatoric moment tensor with a constraint added for no isotropic component although this constraint can be lifted for estimating the full moment tensor like mining collapses or explosion sources.

Ichinose, GeneA↗

LIB Design Module for Grid Energy System Application

We will employ a machine learning approach with intelligent data mining and database construction to analyze enormous data repositories for identifying and extracting geographic-dependent cell design specifications from publicly accessible grid-scale energy storage usage databases in an automated way at scale.

Liu, Dianying [Pacific Northwest National Laborato↗

Verifiable Fuel Cycle Simulation

The Verifiable Fuel Cycle Simulation (VISION) is a system-dynamics model of the entire nuclear fuel cycle, from mining to disposal, using user-defined deployment scenarios, fuel recipes, and recycling parameters. It is written in the PowerSim simulation environment and utilized MS Excel to manage data inputs and outputs.

Hays, RossD (0000000184587539)↗

ChemEcho v1.0

ChemEcho is a tool that converts tandem mass spectra into embeddings used to build machine learning (ML) models with fully explainable predictions. It provides an API for transforming raw tandem mass spectral data into embeddings, along with functions for training and validating ML models. Additionally, it includes utilities for retrieving and cleaning training data. ChemEcho is broadly applicable in ML pipelines that use tandem mass spectra for a variety of tasks, such as chemical classification or bioactivity mining. While there are existing methods to generate embeddings from fragmentation data, ChemEcho's approach ensures that predictions remain interpretable, enabling experts to evaluate results and generate hypotheses about the underlying data.

Harwood, Thomas [Lawrence Berkeley National Labora↗

Interplays In The Rare Earth Element Value Chain

An imbalance problem exists in the rare earth element (REE) market with cerium and lanthanum being more abundant and less valuable than REEs used in permanent magnets such as neodymium, praseodymium, and dysprosium. Research has been conducted on new applications for abundant REEs to improve mining economics. However, potential market impacts of these applications on individual REE commodities are unknown. A system dynamics model was built to investigate the impacts of a new aluminum-cerium (Al-Ce) alloy that can theoretically utilize three separate cerium forms: cerium carbonate, cerium oxide, or cerium metal. Cerium carbonate currently possesses the lowest price of the three available forms making it initially the most favorable choice. However, model results showed that cerium oxide could provide the best economics for future Al-Ce alloy deployment because its larger market size buffers major shocks to price.

Severson, Michael [Idaho National Laboratory (INL)↗

SpacerExtractor v0.9

The SpacerExtractor tool is meant to robustly identify and extract CRISPR spacers from metagenome short reads. Working from a database of known CRISPR repeats, SpacerExtractor quickly scans short reads for the corresponding repeat sequences, extract the potential spacer between two repeats, apply several quality control, denoising, and clustering steps, and provides a full non-redundant complement of spacers for each detected repeat. Because of the high variability observed at CRISPR loci, this read mining approach typically recovers a much larger diversity of spacers than can be found in assembled contigs. SpacerExtractor also includes commands to run CRISPR-Cas Typer on a new set of genomes or MAGs, and add newly predicted repeats to the repeat database.

Bushnell, Brian↗