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All sourcesNASA NTRSDOE OSTI
DOE OSTI2020

Making Northway, Alaska Resilient and Sustainable Through Energy Efficiency and Solar Power

This project implemented energy efficiency measures and installed 6 kW solar arrays on three community buildings in Northway, Alaska, in a collaboration between the Department of Energy - Office of Indian Energy Policy and Programs, the Northway Village Council (NVC), the Tanana Chiefs Conference (TCC), and the Alaska Native Tribal Health Consortium (ANTHC). Northway is a small community in interior Alaska, close to the Canadian border, with high fuel and energy costs: $3.00 per gallon of diesel and $0.56 per kWh, respectively, in 2016, when the project began. The energy efficiency and solar power installation plans aligned with Northway’s long-term energy goals of increasing renewable energy and decreasing reliance on fossil fuels, per the Northway Community Energy Action Plan, the Alaska Interior Regional Energy Plan, and TCC Comprehensive Economic Development Strategy. The project focused on three buildings: (1) the community hall (and later office) building, (2) the washeteria building, and (3) the water/sewer garage. It included multiple directions for energy efficiency measures, such as installing LED lighting upgrades, programmable thermostats, vending machine energy misers, efficient pumps, and adding glycol loops at the water/sewer plant. Since the village has a high potential for solar energy, in order to increase resilience and decrease costs, solar systems were installed on three community buildings. Later, a battery was installed in the community hall to capture solar power produced but not used during the day, and allow the flexibility to use that power during evening and night, further decreasing the reliance on grid power for that building. Electricity savings realized by the village between 2011-2012 and 2018-2019 by improving energy efficiencies in the buildings and adding solar was 23%. This is despite the community hall doubling in size during the same time period. If that is taken into consideration (by adding community hall usage into the 2011-2012 usage one additional time), the energy savings from 2011-2012 to 2018-2019 was 37%.

14 SOLAR ENERGY↗
DOE OSTI2022

Microgrid Conceptual Design Guidebook | 2022

This guide is meant to assist communities – from residents to energy experts to decision makers – in developing a conceptual microgrid design that meets site-specific energy resilience goals. Using the framework described in this guidebook, stakeholders can come together and start to quantify site-specific vulnerabilities, identify the most significant risks to delivery of electricity, and establish electric outage tolerances across the community. In addition to establishing minimum service needs, this framework encourages communities to consider broader sustainability goals and policy constraints and begin to estimate up-front costs associated with the installation of alternative microgrid solutions. The framework guides a community through data collection and a high-level assessment of its needs, constraints, and priorities, prior to engaging engineers, vendors, and contractors. The first sections of this guidebook provide a high-level primer on electric systems. The latter sections include guidance for step-by-step data gathering and analysis of site conditions. The ultimate product resulting from the stepwise approach is a conceptual microgrid design. A conceptual design is defined as an initial design (10%-20% complete) that considers the specific threats, needs, limitations, and investment options for a given location. Going through this exercise and developing the conceptual microgrid design as a community ensures the same community members who will ultimately live with the solution are the developers of its foundational design. Often, these are also the very same people who understand system tolerances and needs the best and are therefore the ideal candidates for establishing these criteria. Especially when it comes to evaluating critical infrastructure, it is the community that best understands the most critical services. The framework is intended to facilitate a systematic approach to planning for resilience and provide a deeper understanding of how to use a framework to make decisions around microgrid solutions. Like many processes where tradeoffs need to be considered, this is often an iterative process. If this guide serves to help educate and empower communities who are beginning the process of deploying a microgrid, it has met the goal of its authors.

24 POWER TRANSMISSION AND DISTRIBUTION↗
DOE OSTI2025

Makah Tribe Strategic Energy Plan

The U.S. Department of Energy’s (DOE) Energy Transitions Initiative Partnership Project (ETIPP) connects remote and island communities, regional partners, and the DOE national laboratories to support communities as they seek to build resilience in their energy systems. The Makah Tribe faces several energy challenges, including frequent power outages and the potential for an extended outage due to an earthquake or tsunami. The Tribe joined ETIPP in 2022 to address those challenges, seeking to build energy resilience and sovereignty in the community. The Makah Tribe, Spark Northwest, the Pacific Northwest National Laboratory (PNNL), and the National Renewable Energy Laboratory (NREL) collaborated to develop a strategic energy plan as part of the second cohort of ETIPP communities. The long-term energy vision of the Makah Tribe includes increasing energy efficiency in the community, improving energy management capacity, and developing the renewable energy generation and storage sufficient to independently power the Reservation for one year. Additionally, the ETIPP team worked with Makah leadership, staff, and community members to identify a set of community priorities, values, and goals to guide energy development as the Tribe takes the incremental steps toward their vision for energy sovereignty. Those energy values include ecosystem-based management, energy sovereignty and project ownership, workforce development and capacity, economic opportunity, community wellbeing and priorities, and emergency disaster resilience. To understand what would be needed for a year for energy independence, the PNNL team conducted an assessment to determine the current energy usage of the Tribe and also modeled several scenarios for future energy use. Using the energy usage values, the team estimated how two types of renewable energy technology, specifically locally deployed solar and small-scale wind, could contribute towards the energy independence goal. The energy baseline and resource assessment produced the following key findings:

29 ENERGY PLANNING, POLICY, AND ECONOMY↗
DOE OSTI2021

Disturbance triggers non-linear microbe–environment feedbacks

Abstract. Conceptual frameworks linking microbial community membership, properties, and processes with the environment and emergent function have been proposed but remain untested. Here we refine and test a recent conceptual framework using hyporheic zone sediments exposed to wetting–drying transitions. Our refined framework includes relationships between cumulative properties of a microbial community (e.g., microbial membership, community assembly properties, and biogeochemical rates), environmental features (e.g., organic matter thermodynamics), and emergent ecosystem function. Our primary aim was to evaluate the hypothesized relationships that comprise the conceptual framework and contrast outcomes from the whole and putatively active bacterial and archaeal communities. Throughout the system we found threshold-like responses to the duration of desiccation. Membership of the putatively active community – but not the whole bacterial and archaeal community – responded due to enhanced deterministic selection (an emergent community property). Concurrently, the thermodynamic properties of organic matter (OM) became less favorable for oxidation (an environmental component), and respiration decreased (a microbial process). While these responses were step functions of desiccation, we found that in deterministically assembled active communities, respiration was lower and thermodynamic properties of OM were less favorable. Placing the results in context of our conceptual framework points to previously unrecognized internal feedbacks that are initiated by disturbance and mediated by thermodynamics and that cause the impacts of disturbance to be dependent on the history of disturbance.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2020

Remediation of Temporary Storage Sites in Support of the Port Hope Area Initiative - 20295

The Port Hope Area Initiative is a community-based solution for the long-term management of historic low level radioactive waste (LLRW) resulting from 60 years of uranium and radium processing operations in the Town of Port Hope which is located in Ontario, Canada. The Eldorado refinery, on the north shore of Lake Ontario, began refining radium-226 from pitchblende ore, later transitioning to the refining of uranium. Through the history of the operation, LLRW was deposited throughout the town of Port Hope as a result of fugitive emissions from the plant and/or through the re-use of process residues as building material and backfill. Historical clean-up activities conducted in the late 1970's involved the remediation of approximately 400 properties and the relocation of 100,000 cubic metres of contaminated soil to a disposal facility in Chalk River operated by Atomic Energy of Canada Limited (AECL). Owing to space limitations at that disposal facility, any LLRW identified through construction monitoring since that time has been stored in the community at three temporary storage sites located throughout the town. These include: the Centre Pier mound that contained approximately of 19,800 m{sup 3} of LLRW-impacted soil that originated from the construction of a new water treatment plant; two mounds located at a licensed storage facility containing LLRW obtained from residential clean-up activities (11,000 m{sup 3}); and a small pad adjacent to the municipal sewage treatment plant containing 2200 m{sup 3} of LLRW-containing sludge. With the construction of a new long-term waste management facility (LTWMF) that has been designed to house all of the LLRW identified within Port Hope, the three sites were early candidates for remediation. The clean-up of the three temporary storage sites was a significant milestone for the Port Hope Area Initiative. After a decade of planning and consultation, this work represents the first sites in the municipality to be remediated with the waste being safety removed and transferred to the newly constructed LTWMF. This paper discusses the challenges associated with the clean-up activities for these three sites and the strategies employed to address those challenges. These included weather-related challenges, owing to the seasons over which the work was conducted as well as those associated with working within a closely-knit community. Canadian Nuclear Laboratories (CNL), working on behalf of the federal government, has worked diligently to develop a positive and trusting relationship with the community. Consequently, the successful execution of this project needed to be sensitive to, and respectful of the needs of the community. In addition to the usual Health, Safety and Environment training, project staff received community awareness training that spoke to the history of this community-based initiative and the expected behavior when working within the community. Transportation routes were defined based on safety and the need to minimize disruption to local traffic while haul-times where scheduled around school bus hours to enhance public safety. The successful completion of this first of many remediation projects to be completed under the Port Hope Area Initiative reflected years of careful planning. Nevertheless, there were a number of 'lessons learned' that have been applied on other ongoing projects be completed under the Port Hope Area Initiative. (authors)

12 MANAGEMENT OF RADIOACTIVE AND NON-RADIOACTIVE W↗
DOE OSTI2022

Calista Energy Management Assistance Initiative

The Calista Energy Management Assistance Initiative (CEMAI) provided technical assistance and capacity building for 56 Tribal communities in the Calista Region of Alaska as an effort to reduce costs, improve operational efficiency, enhance human capacity, and job opportunities. CEMAI catalyzed and guided numerous efforts into a consolidated and effective initiative that brought rural energy best practices, economies of scale, operational efficiencies, human capacity, and economic development to the forefront. Calista Corporation (Calista) is one of thirteen Alaska Native Regional Corporations created under the Alaska Native Claims Settlement Act of 1971 (ANCSA) in the settlement of aboriginal land claims. Calista was incorporated in Alaska on June 12, 1972. The Calista Region covers Alaska’s Bethel and Kusilvak (formerly Wade Hampton) Census areas and includes 56 communities. Calista partnered with Nuvista Light and Electric Cooperative (Nuvista) on the Department of Energy, Office of Indian Energy (DOE-OIE), CEMAI project. Nuvista is a non-profit that seeks to reduce energy costs and provide renewable sources of energy to the people of western Alaska. It is founded and led by a non-profit, Tribe, Native Corporations (including Calista), energy organizations, and Alaska Native stakeholders in the Yukon-Kuskokwim Delta (YK-D) Region; covering the same service boundaries and communities served by Calista. This partnership allowed Calista to direct the project work with local energy experts to respond to community needs. In this arrangement, Calista added credibility and regional accountability while Nuvista added energy-specific expertise and skill set in project management. The delivery of the CEMAI Workplan included short-term or on-demand responses to specific technical assistance requests from communities in addition to longer-term strategically directed activities such as workshops, coordinated training, and capacity development efforts across the region. CEMAI’s Workplan aimed to enhance communities’ readiness for establishing renewable energy projects and implementing energy efficiency initiatives. The CEMAI objectives included: (1) Identifying common operational needs and improvement opportunities for entities with an energy interest or responsibility. (2) Providing access to multi-level expertise to address existing challenges. (3) Developing specialized training programs to build local capacity and community readiness. (4) Nurturing the creation of regional support networks. (5) Increasing access to regional, state, and federal energy initiatives, funding, and expertise. (6) Improving technical skills, provide livable wages, and job opportunities.

29 ENERGY PLANNING, POLICY, AND ECONOMY↗
DOE OSTI2023

LA100 Equity Strategies. Chapter 1: Justice as Recognition

The LA100 Equity Strategies project synthesizes community guidance with robust research, modeling, and analysis to identify strategy options that can increase equitable outcomes in Los Angeles' clean energy transition. Grounded in the analysis of past and ongoing energy inequities and engagement with underserved communities, the project presents community-guided and community-tailored strategies that aim to operationalize recognition and procedural justice. This chapter focuses on recognition justice, identifying and analyzing past and present social, cultural, and institutional barriers to affordable and clean energy for LA communities, as well as disparities in the distribution of energy system burdens and benefits. Acknowledging historical and structural factors behind current energy inequities is a first step in developing energy equity strategies for the Los Angeles Department of Water and Power (LADWP) to achieve distributional justice - the just and equitable distribution of energy benefits and burdens in LA's energy transition. Recognition, procedural, and distributional justice are the three tenets of energy justice around which the LA100 Equity Strategies project is organized. In the United States, theory and practice around justice have historically focused on unequal distribution of environmental benefits and burdens. The historical siting of hazardous infrastructure such as power plants and transportation corridors in communities of color and low-income communities has disproportionately concentrated negative environmental impacts in their neighborhoods. Those inequities are reproduced via programs, policies, and other efforts (e.g., zoning and regulations, rebates and incentives, lending, investment, and financing) that directly affect people's lives and livelihoods. In recent decades, energy justice scholars and activists broadened their analysis to examine how environmental inequities intersect with other forms of social difference in the distribution of energy benefits and burdens. This approach investigates how differences in class, race, gender, age, and abilities, among others, intersect to understand the social, cultural, and institutional processes that create and perpetuate energy inequities. The LA100 Equity Strategies project embraces this approach to developing a more just clean energy future for LA. Because recognizing and understanding past and existing inequities is vital to addressing them in ways that ensure an equitable energy transition for all Angelenos, this chapter focuses on identifying and analyzing the challenges and inequities of LA's past and existing energy system, including LADWP programs.

community↗
DOE OSTI2024

The Iowa Tribe of Kansas and Nebraska: Advancing Clean, Resilient, and Sovereign Energy

The Iowa Tribe of Kansas and Nebraska (ITKN) is a federally recognized Native American Tribe located along the Missouri River on the border of northeast Kansas and southeastern Nebraska. There are over 800 residents (Tribal citizens and non-Tribal) who live on the reservation, as well as more than 500 people who visit or work on the reservation on a daily basis. The ITKN faces many energy challenges, including rising service costs and dozens of power outages annually that impact resident well-being and business activities on Tribal lands. Power service issues are made more challenging by the remoteness of the reservation, which is 20 miles from the nearest town. Despite this, the ITKN has a long history of cultural and economic resilience: Local self-reliance, environmental stewardship, respecting the carrying capacity of the land, and strengthening the community are Tribal communities' traditional strengths. Long-term energy goals for the ITKN are centered around achieving energy sovereignty. Priority actions include: (1) Establishing a Tribal Utility Authority (TUA) to promote social welfare and community development.; (2) Deploying renewable community microgrids with ground-mount solar arrays and sustainable energy storage systems to advance energy sovereignty, resilience, and reliability. To advance these goals, the ITKN partnered with the U.S. Department of Energy's (DOE's) Communities LEAP (Local Energy Action Program) pilot. From August 2022 to March 2024, the ITKN community coalition collaborated with technical assistance providers at DOE's National Renewable Energy Laboratory (NREL) and Sandia National Laboratories to evaluate TUA planning needs and microgrid deployment scenarios. This fact sheet provides an overview of the results and outcomes from the Communities LEAP technical assistance process.

Communities Leap↗
DOE OSTI2023

Working with Trusted Local Organizations to Address Impediments to Cost-Effective and Holistic Building Performance Improvements

Commercial buildings are at the heart of any community. Investments towards the health and performance of community buildings can support a wide range of critical community and individual benefits; however, many buildings have been left behind in these investments due to a spectrum of barriers, especially those located in underserved communities. This portfolio of work stands with the intent that if we can create solutions to support the hardest-to-reach commercial buildings in gaining equitable access to energy efficiency, zero energy, and zero carbon solutions, we can support all commercial buildings with these goals. To understand success and barriers, and identify new, innovative, and impactful solutions, NREL is taking a four-part approach to: 1. Develop a methodology for defining affordability in commercial buildings and understand its impact on underserved communities, 2. Work with trusted, local organizations to address barriers that impede access to cost-effective, holistic, building performance improvements, 3. Support minority-focused developer incubator programs for, and within, underserved communities, and 4. Identify overlapping value streams that support underserved community and utility needs.

barriers↗
DOE OSTI2023

Centering Energy and Environmental Justice in the Buildings Energy Sector

We face incredible challenges for decarbonizing our economy and raising the standard of living for all members of our society at the same time. Historical energy efficiency efforts have been effective in making small steps, but they fall far short of the massive changes we need to make, and they completely miss helping communities of disadvantage (e.g. low-income, African American, Hispanic American, Native American and tribal nations, etc). Business as usual efforts do not take the time to connect with and understand the challenges of these historical underinvested communities and therefore have not been effective at helping these communities. The Biden Harris Administration has set ambitious goals for decarbonization of our economy that include a requirement that 40% of efforts support energy and environmental justice communities. If we are to meet our decarbonization goals, it is imperative that we change our approach to research, development, and deployment of new technologies. The Department of Energy has set energy justice as a priority and is working with the national laboratories to change our approaches. This paper starts with definitions of what we mean by energy and environmental justice and how they apply to building technologies and deployment efforts. We provide several examples of how historical efforts have succeeded and how they have failed to account for challenges of communities of disadvantage. We identify market and technology barriers to decarbonization and energy efficiency for specific technologies and how these barriers are exacerbated for disadvantaged communities. From these examples, we propose a new framework for integrating energy and environmental justice into all aspects of technology development, deployment, and policy efforts within the building energy sector.

29 ENERGY PLANNING, POLICY, AND ECONOMY↗
DOE OSTI2024

Abiotic and biotic factors jointly influence the contact and environmental transmission of a generalist pathogen

The joint influence of abiotic and biotic factors is important for understanding the transmission of generalist pathogens. Abiotic factors such as temperature can directly influence pathogen persistence in the environment and will also affect biotic factors, such as host community composition and abundance. At intermediate spatial scales, the effects of temperature, community composition, and host abundance are expected to contribute to generalist pathogen transmission. We use a simple transmission model to explain and predict how host community composition, host abundance, and environmental pathogen persistence times can independently and jointly influence transmission. Our transmission model clarifies how abiotic and biotic factors can synergistically support the transmission of a pathogen. The empirical data show that high community competence, high abundance, and low temperatures correlate with high levels of transmission of ranavirus in larval amphibian communities. Discrete wetlands inhabited by larval amphibians in the presence of ranavirus provide a compelling case study comprising distinct host communities at a spatial scale anticipated to demonstrate abiotic and biotic influence on transmission. We use these host communities to observe phenomena demonstrated in our theoretical model. These findings emphasize the importance of considering both abiotic and biotic factors, and concomitant direct and indirect mechanisms, in the study of pathogen transmission and should extend to other generalist pathogens with the capacity for environmental transmission.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2023

Deployment Readiness Framework Subtask 1.2 Outreach Report: Common Themes Among Clean Energy Transition Technical Assistance Projects

Island and remote coastal communities face an uncertain energy future. These communities build, operate, and maintain energy infrastructure in extremely challenging environments and pay the highest prices for electricity and fuels. Moreover, climate change increasingly affects grid reliability, resiliency, and, ultimately, the cost of energy. Marine energy could address many of the challenges faced by island and remote coastal communities, but these communities often have limited resources and capacity to invest in complex energy and coastal resilience issues. The Deployment Readiness Framework (DRF) is being developed to support community-driven energy transitions in these coastal communities and to better understand the readiness of communities for marine energy demonstration and operation. Led by the National Renewable Energy Laboratory and Pacific Northwest National Laboratory, the DRF builds on the Energy Transitions Initiative Partnership Project (ETIPP) supported in part by the U.S. Department of Energy's Water Power Technologies Office. This report details the results from the stakeholder outreach and engagement effort linked to the previously reported literature review.

16 TIDAL AND WAVE POWER↗
DOE OSTI2023

Bringing Low- and Moderate-Income Solar Financing Models to Scale (Final Technical Report (FTR))

In this final report, the Clean Energy States Alliance(CESA) and its project partners describe their work to accelerate the development of solar projects for three distinct subsets of the low- to moderate-income(LMI) solar market: single-family homes, manufactured homes, and community institutions, including multifamily affordable housing. For each market sector, the project team undertook research, outreach, and market-building activities. By advancing promising LMI solar financing innovations for different housing types and spreading them to new locations, the Scaling Up Solar for Under-Resourced Communities project has built momentum to scale up LMI solar. Although the report describes some research pertaining to solar adoption in LMI communities, this project was original in that it focused on two specific models to tackle single-family homes and community institutions. Until this project, very little research dedicated to solar for manufactured homes existed. For each market sector, the project team undertook research, outreach, and market-building activities. For the single-family homes sector, the project encouraged states to adapt a program model based on a successful Connecticut initiative that has brought solar to thousands of LMI homeowners. For manufactured homes, the project analyzed the potential for using solar for that housing sector and worked with states, utilities, and other stakeholders to launch pilot projects or programs. For community institutions, the project team worked with foundations, lenders, and community service organizations to inventory, analyze, and communicate models for philanthropic investment that accelerate the deployment of solar and solar+storage in multifamily affordable housing, health centers, and other LMI-serving community institutions.

14 SOLAR ENERGY↗
DOE OSTI2024

Best Practices for Equitable Solar Workforce Development

The Midwest Renewable Energy Association (MREA) was selected to serve as a lead organization for the U.S. Department of Energy Solar Energy Technology Office’s Equitable Solar Communities of Practice initiative. This project, facilitated through a partnership with ENERGYWERX, aimed to develop strategies to support the expansion of equitable benefits in solar adoption across the U.S. Specifically, the MREA was chosen to lead the solar workforce development community of practice, focusing on scaling the U.S. solar workforce, to meet growing industry demands and ensure that these opportunities are accessible and beneficial to all communities. For the purpose of this initiative, we define the solar workforce in line with the National Solar Jobs Census, which defines a solar worker as someone who spends a majority of their time on solar-related work. This also includes workers who spend a plurality of their time on solar tasks. It’s important to note that manufacturing jobs were not included in this research, as the focus is primarily on solar installation, development, and related roles. To achieve the goals of the Equitable Solar Communities of Practice initiative, the MREA leveraged existing resources and engaged a diverse core team and group of stakeholders including industry professionals, educators, policymakers, and community leaders. The MREA began with a literature review and gap analysis to identify existing best practices and gaps in the solar workforce. This was followed by a community convening to gather insights from a wide range of stakeholders. The findings informed the best practices and pathways to scale the benefits of solar workforce development, focusing on training programs, workforce services, apprenticeship, and justice, inclusion, and sustainability. This report outlines the background, methodology, findings, and conclusions drawn from the landscape and gap analysis, providing valuable insights into workforce needs and training program capacities across the U.S. The outcomes of this research are presented in this report and contain recommendations for optimizing workforce development and training funding to support the equitable growth of the solar industry, ensuring that the transition to solar energy is inclusive and beneficial for all communities.

14 SOLAR ENERGY↗
DOE OSTI2020

Soil microbial EPS resiliency is influenced by carbon source accessibility

The adaptability of soil microbial communities to prolonged periods of drought is influenced by their ability to produce extracellular polymeric substances (EPS) with sufficient water retention properties. Microbial EPSs as water reservoirs during drought have been extensively investigated, but it remains unknown how carbon substrate accessibility to soil microbial communities will affect the chemical properties of the EPS they generate, and whether this in turn will alter their water retention ability. In this work, we observed that the accessibility of carbon substrates influenced microbial community structure and, consequently, the chemical properties of EPS produced by the microbial communities. Further, our results demonstrated that an insoluble carbon substrate (i.e., chitin), stimulated microbial communities to produce EPS with better water retention properties in comparison to a soluble carbon substrate (i.e., N-acetylglucosamine; NAG). In all, this study demonstrates the importance of carbon substrate accessibility by soil microorganisms in regulating the community structure and consequently, the EPS carbon chemistry, which in turn can greatly influence the adaptability of soil microbial communities to drought.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2022

Plant-associated fungi support bacterial resilience following water limitation

Abstract Drought disrupts soil microbial activity and many biogeochemical processes. Although plant-associated fungi can support plant performance and nutrient cycling during drought, their effects on nearby drought-exposed soil microbial communities are not well resolved. We used H218O quantitative stable isotope probing (qSIP) and 16S rRNA gene profiling to investigate bacterial community dynamics following water limitation in the hyphospheres of two distinct fungal lineages (Rhizophagus irregularis and Serendipita bescii) grown with the bioenergy model grass Panicum hallii. In uninoculated soil, a history of water limitation resulted in significantly lower bacterial growth potential and growth efficiency, as well as lower diversity in the actively growing bacterial community. In contrast, both fungal lineages had a protective effect on hyphosphere bacterial communities exposed to water limitation: bacterial growth potential, growth efficiency, and the diversity of the actively growing bacterial community were not suppressed by a history of water limitation in soils inoculated with either fungus. Despite their similar effects at the community level, the two fungal lineages did elicit different taxon-specific responses, and bacterial growth potential was greater in R. irregularis compared to S. bescii-inoculated soils. Several of the bacterial taxa that responded positively to fungal inocula belong to lineages that are considered drought susceptible. Overall, H218O qSIP highlighted treatment effects on bacterial community structure that were less pronounced using traditional 16S rRNA gene profiling. Together, these results indicate that fungal–bacterial synergies may support bacterial resilience to moisture limitation.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2021

Soil microbiome predictability increases with spatial and taxonomic scale

Soil microorganisms shape ecosystem function, yet it remains an open question whether we can predict the composition of the soil microbiome in places before observing it. Furthermore, it is unclear whether the predictability of microbial life exhibits taxonomic- and spatial-scale dependence, as it does for macrobiological communities. Here, we leverage multiple large-scale soil microbiome surveys to develop predictive models of bacterial and fungal community composition in soil, then test these models against independent soil microbial community surveys from across the continental United States. We find remark- able scale dependence in community predictability. The predictability of bacterial and fungal communities increases with the spatial scale of observation, and fungal predictability increases with taxonomic scale. These patterns suggest that there is an increasing importance of deterministic versus stochastic processes with scale, consistent with findings in plant and animal communities, suggesting a general scaling relationship across biology. Biogeochemical functional groups and high-level taxonomic groups of microorganisms were equally predictable, indicating that traits and taxonomy are both powerful lenses for understanding soil communities. Here, by focusing on out-of-sample prediction, these findings suggest an emerging generality in our understanding of the soil microbiome, and that this understanding is fundamentally scale dependent

Biogeography↗
DOE OSTI2022

CRISPR-based engineering of phages for in situ bacterial base editing

Investigation of microbial gene function is essential to the elucidation of ecological roles and complex genetic interactions that take place in microbial communities. While microbiome studies have increased in prevalence, the lack of viable in situ editing strategies impedes experimental progress, rendering genetic knowledge and manipulation of microbial communities largely inaccessible. Here, we demonstrate the utility of phage-delivered CRISPR-Cas payloads to perform targeted genetic manipulation within a community context, deploying a fabricated ecosystem (EcoFAB) as an analog for the soil microbiome. First, we detail the engineering of two classical phages for community editing using recombination to replace nonessential genes through Cas9-based selection. We show efficient engineering of T7, then demonstrate the expression of antibiotic resistance and fluorescent genes from an engineered λ prophage within an Escherichia coli host. Next, we modify λ to express an APOBEC-1-based cytosine base editor (CBE), which we leverage to perform C-to-T point mutations guided by a modified Cas9 containing only a single active nucleolytic domain (nCas9). We strategically introduce these base substitutions to create premature stop codons in-frame, inactivating both chromosomal ( lacZ ) and plasmid-encoded genes (mCherry and ampicillin resistance) without perturbation of the surrounding genomic regions. Furthermore, using a multigenera synthetic soil community, we employ phage-assisted base editing to induce host-specific phenotypic alterations in a community context both in vitro and within the EcoFAB, observing editing efficiencies from 10 to 28% across the bacterial population. The concurrent use of a synthetic microbial community, soil matrix, and EcoFAB device provides a controlled and reproducible model to more closely approximate in situ editing of the soil microbiome.

59 BASIC BIOLOGICAL SCIENCES↗