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At least 1,441 records · Page 80
All sourcesNASA NTRSDOE OSTI
DOE OSTI2024

Centralized Interactive Phenomics Resource: an integrated online phenomics knowledgebase for health data users

Development of clinical phenotypes from electronic health records (EHRs) can be resource intensive. Several phenotype libraries have been created to facilitate reuse of definitions. However, these platforms vary in target audience and utility. Here, we describe the development of the Centralized Interactive Phenomics Resource (CIPHER) knowledgebase, a comprehensive public-facing phenotype library, which aims to facilitate clinical and health services research. The platform was designed to collect and catalog EHR-based computable phenotype algorithms from any healthcare system, scale metadata management, facilitate phenotype discovery, and allow for integration of tools and user workflows. Phenomics experts were engaged in the development and testing of the site. The knowledgebase stores phenotype metadata using the CIPHER standard, and definitions are accessible through complex searching. Phenotypes are contributed to the knowledgebase via webform, allowing metadata validation. Data visualization tools linking to the knowledgebase enhance user interaction with content and accelerate phenotype development. The CIPHER knowledgebase was developed in the largest healthcare system in the United States and piloted with external partners. The design of the CIPHER website supports a variety of front-end tools and features to facilitate phenotype development and reuse. Health data users are encouraged to contribute their algorithms to the knowledgebase for wider dissemination to the research community, and to use the platform as a springboard for phenotyping. CIPHER is a public resource for all health data users available at https://phenomics.va.ornl.gov/ which facilitates phenotype reuse, development, and dissemination of phenotyping knowledge.

60 APPLIED LIFE SCIENCES↗
NASA NTRS2017

Description of the TCERT Vetting Reports for Data Release 25

The Q1Q17 DR25 TCERT Vetting Reports are a collection of plots and diagnostics used by the Threshold Crossing Event Review Team (TCERT) to evaluate threshold crossing events (TCEs). While designation of Kepler Objects of Interest (KOIs) and classification of them as Planet Candidates (PCs) or False Positives (FPs) is completely automated via a robotic vetting procedure (the Robovetter) for the Q1Q17 DR25 planet catalog, as described in Thompson et al. (2017), these reports help to visualize the metrics used by the Robovetter and evaluate those robotic decisions for individual objects. For each Q1Q17 DR25 TCE, these reports include the following products: (a) the DV one-page summary, (b) selected pertinent diagnostics and plots from the full DV report, and (c) additional plots and diagnostics not included in the full DV report, including an alternate means of data detrending.

Kepler Objects of Interest↗
DOE OSTI2022

The Dark Energy Survey Bright Arcs Survey: Candidate Strongly Lensed Galaxy Systems from the Dark Energy Survey 5000 Square Degree Footprint

We report the combined results of eight searches for strong gravitational lens systems in the full 5000 square degrees of Dark Energy Survey (DES) observations. The observations accumulated by the end of the third observing season fully covered the DES footprint in five filters (grizY), with an i-band limiting magnitude (at 10σ) of 23.44. In four searches, a list of potential candidates was identified using a color and magnitude selection from the object catalogs created from the first three observing seasons. Three other searches were conducted at the locations of previously identified galaxy clusters. Cutout images of potential candidates were then visually scanned using an object viewer. An additional set of candidates came from a data-quality check of a subset of the color–coadd tiles created from the full DES six-season data set. A short list of the most promising strong-lens candidates was then numerically ranked according to whether or not we judged them to be bona fide strong gravitational lens systems. These searches discovered a diverse set of 247 strong-lens candidate systems, of which 81 are identified for the first time. We provide the coordinates, magnitudes, and photometric properties of the lens and source objects, and an estimate of the Einstein radius for 81 new systems and 166 previously reported systems. This catalog will be of use for selecting interesting systems for detailed follow up, studies of galaxy cluster and group mass profiles, as well as a training/validation set for automated strong-lens searches.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗
DOE OSTI2025

Dark Energy Survey Year 6 Results: Point-Spread Function Modeling

We present the point-spread function (PSF) modeling for weak lensing shear measurement using the full six years of the Dark Energy Survey (DES Y6) data. We review the PSF estimation procedure using the PIFF (PSFs In the Full FOV) software package and describe the key improvements made to PIFF and modeling diagnostics since the DES year three (Y3) analysis: (i) use of external Gaia and infrared photometry catalogs to ensure higher purity of the stellar sample used for model fitting, (ii) addition of color-dependent PSF modeling, the first for any weak lensing analysis, and (iii) inclusion of model diagnostics inspecting fourth-order moments, which can bias weak lensing measurements to a similar degree as second-order modeling errors. Through a comprehensive set of diagnostic tests, we demonstrate the improved accuracy of the Y6 models evident in significantly smaller systematic errors than those of the Y3 analysis, in which all g band data were excluded due to insufficiently accurate PSF models. For the Y6 weak lensing analysis, we include g band photometry data in addition to the riz bands, providing a fourth band for photometric redshift estimation. Looking forward to the next generation of wide-field surveys, we describe several ongoing improvements to PIFF, which will be the default PSF modeling software for weak lensing analyses for the Vera C. Rubin Observatory’s Legacy Survey of Space and Time.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗
NASA NTRS1993

Characteristics of arachnoids from Magellan data

Current high resolution Magellan data enables more detailed geological study of arachnoids, first identified by Barsukov et al. as features characterized by a combination of radar-bright, concentric rings and radiating lineations, named 'arachnoids' on the basis of their spider and web-like appearance. Identification of arachnoids in Magellan data has been based on SAR images, in keeping with the original definition. However, there is some overlap by other workers in identification of arachnoids, corona (predominantly bright rings), and novae (predominantly radiating lineations), as all of these features share some common characteristics. Features used in this survey were chosen based on their classification as arachnoids in Head et al.'s catalog and on SAR characteristics matching Barsukov et al.'s original definition. The 259 arachnoids have been currently identified on Venus, all of which were considered in this study. Fifteen arachnoids from different regions, chosen for their 'type' characteristics and lack of deformation by other regional processes, were studied in depth, using SAR and altimetric data to map and profile these arachnoids in an attempt to better determine their geologic and altimetric characteristics and possible formation sequences.

Dawson, C. B.↗
DOE OSTI2025

Probabilistic Seismic Hazard Analysis for Iraq Based on the Updated Earthquake Catalog (1900-2021) and Ground Motion Characteristics

Onur et al. (2017) compiled the first comprehensive earthquake catalog for Iraq, covering 1900 to 2009 within 26°–40°N latitude and 36°–51°E longitude. This catalog was utilized in a probabilistic seismic hazard assessment (PSHA) by Abdulnaby et al. (2020) to aid in updating Iraq’s building code seismic provisions. Recently, we have updated the earthquake catalog for Iraq by adding earthquakes recorded from 2010 to 2021 and directly calculating moment magnitude (Mw) for about 2,800 earthquakes using the coda envelope methodology and waveform data from the Mesopotamian Seismological Network (MPSN) in Iraq.

58 GEOSCIENCES↗
DOE OSTI2022

White Dwarf Binaries across the H-R Diagram

We created the APOGEE-GALEX-Gaia catalog to study white dwarf (WD) binaries. This database aims to create a minimally biased sample of WD binary systems identified from a combination of GALEX, Gaia, and APOGEE data to increase the number of WD binaries with orbital parameters and chemical compositions. We identify 3414 sources as WD binary candidates, with nondegenerate companions of spectral types between F and M, including main-sequence stars, main-sequence binaries, subgiants, sub-subgiants, red giants, and red clump stars. Among our findings are (a) a total of 1806 systems having inferred WD radii R < 25 R ⊕ , which constitute a more reliable group of WD binary candidates within the main sample; (b) a difference in the metallicity distribution function between WD binary candidates and the control sample of most luminous giants (M H < -3.0); (c) the existence of a population of sub-subgiants with WD companions; (d) evidence for shorter periods in binaries that contain WDs compared to those that do not, as shown by the cumulative distributions of APOGEE radial velocity shifts; (e) evidence for systemic orbital evolution in a sample of 252 WD binaries with orbital periods, based on differences in the period distribution between systems with red clump, main-sequence binary, and sub-subgiant companions and systems with main-sequence or red giant companions; and (f) evidence for chemical enrichment during common envelope (CE) evolution, shown by lower metallicities in wide WD binary candidates (P > 100 days) compared to post-CE (P < 100 days) WD binary candidates.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2023

A Census of the Taurus Star-forming Region and Neighboring Associations with Gaia*

I have used high-precision photometry and astrometry from the third data release of Gaia to perform a survey for members of the Taurus star-forming region and young associations in its vicinity. This work has produced a new catalog of 532 adopted members of Taurus, which has only minor changes relative to the previous catalog from Esplin & Luhman. I have used the Gaia astrometry to divide the Taurus members into 13 groups that have distinct kinematics. Meanwhile, I have identified 1378 candidate members of seven associations near Taurus. All of these associations have histograms of spectral types that peak near M5 (~0.15 M ⊙ ), resembling other young populations in the solar neighborhood. For the Taurus groups and neighboring associations, I have estimated ages from their sequences of low-mass stars in Hertzsprung–Russell diagrams. Most of the Taurus groups have median ages of ~1–3 Myr, while the associations have ages ranging from 13 to 56 Myr. I have used mid-infrared photometry from the Wide-field Infrared Survey Explorer to search for excess emission from circumstellar disks among the candidate members of the associations. Disks are detected for 51 stars, 20 of which are reported for the first time in this work. Some recent studies have proposed that samples of older stars (≳10 Myr) found in the vicinity of Taurus represent a distributed population that is associated with the Taurus cloud complex. However, I find that most of those stars have kinematics that are inconsistent with any relationship with Taurus.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2022

A Hydro-particle-mesh Code for Efficient and Rapid Simulations of the Intracluster Medium

We introduce the cosmological HYPER code based on an innovative hydro-particle-mesh (HPM) algorithm for efficient and rapid simulations of gas and dark matter. For the HPM algorithm, we update the approach of Gnedin & Hui to expand the scope of its application from the lower-density intergalactic medium (IGM) to the higher-density intracluster medium (ICM). While the original algorithm tracks only one effective particle species, the updated version separately tracks the gas and dark matter particles, as they do not exactly trace each other on small scales. For the approximate hydrodynamics solver, the pressure term in the gas equations of motion is calculated using robust physical models. In particular, we use a dark matter halo model, ICM pressure profile, and IGM temperature–density relation, all of which can be systematically varied for parameter-space studies. We show that the HYPER simulation results are in good agreement with the halo model expectations for the density, temperature, and pressure radial profiles. Simulated galaxy cluster scaling relations for Sunyaev–Zel’dovich (SZ) and X-ray observables are also in good agreement with mean predictions, with scatter comparable to that found in hydrodynamic simulations. HYPER also produces lightcone catalogs of dark matter halos and full-sky tomographic maps of the lensing convergence, SZ effect, and X-ray emission. These simulation products are useful for testing data analysis pipelines, generating training data for machine learning, understanding selection and systematic effects, and for interpreting astrophysical and cosmological constraints.

79 ASTRONOMY AND ASTROPHYSICS↗
NASA NTRS1978

Decameter-wave radio observations of Jupiter during the 1977 apparition

A catalog of observations of Jupiter's sporadic decameter wavelength radio emissions obtained with the Goddard Space Flight Center Jupiter Monitor Network between June 1977 and May 1978 is presented. Data were collected using the Goddard Space Flight Center station in Greenbelt, MD. and at facilities installed at Orroral Valley (Canberra), Australia and the Nancay Radio Observatory in France. Observations were obtained daily at frequencies of 16.7 and 22.2 MHz using five-element Yagi antennas at each end of a two-element interferometer. Plots of the two dimensional emission occurrence probability distribution are given.

Alexander, J. K.↗
NASA NTRS1986

A search for Earth-approaching asteroids

New automated methods were developed for the detection and discrimination of Earth-approaching asteriods. Specifically, utilizing state-of-the-art, electron-bombarded, silicon diode, beam scanned, low light level television cameras and the most advanced video processing equipment available. The improvement of the limiting magnitude for a 50% probability of detection, increase the areal search rate, and minimize the burden on humans of the search effort. To this end, three increasingly automated and sophisticated versions of the data acquisition, storage, and processing systems, were designed and implemented. The celestial sphere were searched for Earth-approaching minor planets. An example of this effort is the recent cataloging of 1982 HS=3343 VNEDZEL. This particular high eccentricity, high inclination object is of a type even more rare than are Earth-approaching asteriods. Several of these were found.

Taff, L. G.↗
NASA NTRS1992

SKYMAP: Exploring the Universe in software

SKYMAP is a computer program which produces maps of arbitrary portions of the sky in a variety of projections and coordinate systems. Over the past ten years it has been used to produce finder charts for occultations by planets, display scan and image data from the Spacelab 2 Infrared Telescope, and make maps of fields for astronomical observations at X-ray, optical, infrared, and radio wavelengths. It can display multiple source catalogs, including the HST Guide Star Catalog, as well as solar system objects with astrometric accuracy using the JPL DE-130 ephemeris or tabulated positions. SKYMAP can be tuned to a specific task using an ASCII parameter file which controls how information is displayed on any Tektronix-compatible graphics display. The program contains a variety of interactive graphic and image processing features and has been ported to a variety of computer systems. A recent project visually demonstrates source density variation in various commonly-used all-sky catalogs.

Mink, D. J.↗
NASA NTRS2006

The Swift-BAT Hard X-ray Transient Monitor

The Burst Alert Telescope (BAT) on the Swift satellite is a large field of view instrument that continually monitors the sky to provide the gamma-ray burst trigger for Swift. An average of more than 70% of the sky is observed on a daily basis. The survey mode data is processed on two sets on time scales: from one minute to one day as part of the transient monitor program, and from one spacecraft pointing (approx.20 minutes) to the full mission duration for the hard X-ray survey program. The transient monitor has recently become public through the web site http:// swift.gsfc.nasa.gov/docs/swift/results/transients/. Sky images are processed to detect astrophysical sources in the 15-50 keV energy band and the detected flux or upper limit is calculated for >100 sources on time scales up to one day. Light curves are updated each time that new BAT data becomes available (approx.10 times daily). In addition, the monitor is sensitive to an outburst from a new or unknown source. Sensitivity as a function of time scale for catalog and unknown sources will be presented. The daily exposure for a typical source is approx.1500-3000 seconds, with a 1-sigma sensitivity of approx.4 mCrab. 90% of the sources are sampled at least every 16 days, but many sources are sampled daily. It is expected that the Swift-BAT transient monitor will become an important resource for the high energy astrophysics community.

Krimm, Hans↗
NASA NTRS1993

Multiwavelength observations of unidentified high energy gamma ray sources

As was the case for COS B, the majority of high-energy (greater than 100 MeV) gamma-ray sources detected by the EGRET instrument on GRO are not immediately identifiable with cataloged objects at other wavelengths. These persistent gamma-ray sources are, next to the gamma-ray bursts, the least understood objects in the universe. Even a rudimentary understanding of their nature awaits identifications and follow-up work at other wavelengths to tell us what they are. The as yet unidentified sources are potentially the most interesting, since they may represent unrecognized new classes of astronomical objects, such as radio-quiet pulsars or new types of active galactic nuclei (AGN's). This two-year investigation is intended to support the analysis, correlation, and theoretical interpretation of data that we are obtaining at x ray, optical, and radio wavelengths in order to render the gamma-ray data interpretable. According to plan, in the first year concentration was on the identification and study of Geminga. The second year will be devoted to studies of similar unidentified gamma-ray sources which will become available in the first EGRET catalogs. The results obtained so far are presented in the two papers which are reproduced in the Appendix. In these papers, we discuss the pulse profiles of Geminga, the geometry and efficiency of the magnetospheric accelerator, the distance to Geminga, the implications for theories of polar cap heating, the effect of the magnetic field on the surface emission and environment of the neutron star, and possible interpretations of a radio-quiet Geminga. The implications of the other gamma-ray pulsars which were discovered to have high gamma-ray efficiency are also discussed, and the remaining unidentified COS B sources are attributed to a population of efficient gamma-ray sources, some of which may be radio quiet.

Halpern, Jules P.↗
DOE OSTI2026

SetGo: Metadata Readiness for Scientific AI Datasets

Scientific datasets intended for AI use require both computational readiness for model training and metadata readiness for discovery, sharing, and reuse. The Readiness Engine for Data Integration (REDI) addresses computational readiness, but no corresponding tool evaluates whether a dataset’s metadata are sufficiently complete, governed, and standards-compliant for publication and agent-based consumption. Existing FAIR assessors operate only on published repository records, and no single system covers FAIR compliance, licensing, provenance, governance, reproducibility, and catalog readiness together. We present SetGo, an open-source Python toolkit that assesses and repairs metadata readiness across these six dimensions before a dataset is published or archived. Applied to four scientific corpora, SetGo surfaces deficiencies that general-purpose tools do not detect: ERA5 climate metadata scores 4% on ACDD 1.3 compliance; materials datasets fail OPTIMADE species-definition requirements; and PDB-derived proteomics data carries licensing terms incompatible with standard SPDX identifiers. Guided enrichment raises overall FAIR scores from 52–57% to 81–91%, and a single setgo publish command pushes to Hugging Face Hub, CKAN, or OpenMetadata with ML Commons Croissant 1.0 metadata sidecars. To support interactive and automated workflows, SetGo integrates with coding agents powered by large language models (LLMs) through a /setgo skill that enables natural-language execution of the full assess–enrich–publish loop, with user involvement limited to supplying missing metadata values.

Wilkinson, Sean [ORNL] (ORCID:0000000214437479)↗
NASA NTRS1981

Preliminary orbital parallax catalog

The study is undertaken to calibrate the more reliable parallaxes derived from a comparison of visual and spectroscopic orbits and to encourage observational studies of other promising binaries. The methodological techniques used in computing orbital parallaxes are analyzed. Tables summarizing orbital data and derived system properties are then given. Also given is a series of detailed discussions of the 71 individual systems included in the tables. Data are listed for 57 other systems which are considered promising candidates for eventual orbital parallax determination.

Halliwell, M.↗
DOE OSTI2023

A modERN resource: identification of Drosophila transcription factor candidate target genes using RNAi

Transcription factors (TFs) play a key role in development and in cellular responses to the environment by activating or repressing the transcription of target genes in precise spatial and temporal patterns. In order to develop a catalog of target genes of Drosophila melanogaster TFs, the modERN consortium systematically knocked down the expression of TFs using RNAi in whole embryos followed by RNA-seq. We generated data for 45 TFs which have 18 different DNA-binding domains and are expressed in 15 of the 16 organ systems. The range of inactivation of the targeted TFs by RNAi ranged from log2fold change -3.52 to +0.49. The TFs also showed remarkable heterogeneity in the numbers of candidate target genes identified, with some generating thousands of candidates and others only tens. We present detailed analysis from five experiments, including those for three TFs that have been the focus of previous functional studies (ERR, sens, and zfh2) and two previously uncharacterized TFs (sens-2 and CG32006), as well as short vignettes for selected additional experiments to illustrate the utility of this resource. The RNA-seq datasets are available through the ENCODE DCC (http://encodeproject.org) and the Sequence Read Archive (SRA). TF and target gene expression patterns can be found here: https://insitu.fruitfly.org. These studies provide data that facilitate scientific inquiries into the functions of individual TFs in key developmental, metabolic, defensive, and homeostatic regulatory pathways, as well as provide a broader perspective on how individual TFs work together in local networks during embryogenesis.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2026

Finding the perfect imperfection: Accelerated, computationally driven discovery and design of quantum defects

Optically addressable spin defects have emerged as the leading platforms for quantum sensing and communication in solid-state systems. While traditional efforts have concentrated on a focused set of well-studied defects, recent advances in high-throughput computational methods have shown promise for large-scale exploration of defects across diverse semiconductor hosts. By cataloging key properties of quantum defects in computational databases, high-throughput screening techniques can systematically suggest and design novel candidates. In this article, we highlight recent advances in data-driven quantum defect design aimed at addressing critical materials science challenges such as host materials selection, defect stability, and desirable electronic and optical properties. Here, we emphasize the importance of electronic-structure-guided searches across various materials and illustrate how high-throughput computations contribute to our understanding of design principles for quantum defects. Additionally, we outline ongoing challenges and emerging opportunities in this rapidly developing field.

Xiong, Yihuang [Dartmouth College, Hanover, NH (Un↗