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At least 1,441 records · Page 80

Identification of small-molecule protein–protein interaction inhibitors for NKG2D

NKG2D (natural-killer group 2, member D) is a homodimeric transmembrane receptor that plays an important role in NK, γδ + , and CD8 + T cell-mediated immune responses to environmental stressors such as viral or bacterial infections and oxidative stress. However, aberrant NKG2D signaling has also been associated with chronic inflammatory and autoimmune diseases, and as such NKG2D is thought to be an attractive target for immune intervention. Here, in this study, we describe a comprehensive small-molecule hit identification strategy and two distinct series of protein–protein interaction inhibitors of NKG2D. Although the hits are chemically distinct, they share a unique allosteric mechanism of disrupting ligand binding by accessing a cryptic pocket and causing the two monomers of the NKG2D dimer to open apart and twist relative to one another. Leveraging a suite of biochemical and cell-based assays coupled with structure-based drug design, we established tractable structure–activity relationships with one of the chemical series and successfully improved both the potency and physicochemical properties. Together, we demonstrate that it is possible, albeit challenging, to disrupt the interaction between NKG2D and multiple protein ligands with a single molecule through allosteric modulation of the NKG2D receptor dimer/ligand interface.

59 BASIC BIOLOGICAL SCIENCES↗

Roses in the nonperturbative current response of artificial crystals

In two-dimensional artificial crystals with large real-space periodicity, the nonlinear current response to a large applied electric field can feature a strong angular dependence, which encodes information about the band dispersion and Berry curvature of isolated electronic Bloch minibands. Within the relaxation-time approximation, we obtain analytic expressions up to infinite order in the driving field for the current in a band-projected theory with time-reversal and trigonal symmetry. For a fixed field strength, the dependence of the current on the direction of the applied field is given by rose curves whose petal structure is symmetry constrained and is obtained from an expansion in real-space translation vectors. We illustrate our theory with calculations on periodically buckled graphene and twisted double bilayer graphene, wherein the discussed physics can be accessed at experimentally relevant field strengths.

36 MATERIALS SCIENCE↗

Theory of topological exciton insulators and condensates in flat Chern bands

Excitons are the neutral quasiparticles that form when Coulomb interactions create bound states between electrons and holes. Due to their bosonic nature, excitons are expected to condense and exhibit superfluidity at sufficiently low temperatures. In interacting Chern insulators, excitons may inherit the nontrivial topology and quantum geometry from the underlying electron wavefunctions. We theoretically investigate the excitonic bound states and superfluidity in flat-band insulators pumped with light. We find that the exciton wavefunctions exhibit vortex structures in momentum space, with the total vorticity being equal to the difference of Chern numbers between the conduction and valence bands. Moreover, both the exciton binding energy and the exciton superfluid density are proportional to the Brillouin-zone average of the quantum metric and the Coulomb potential energy per unit cell. Spontaneous emission of circularly polarized light from radiative decay is a detectable signature of the exciton vorticity. We propose that the vorticity can also be experimentally measured via the nonlinear anomalous Hall effect, whereas the exciton superfluidity can be detected by voltage-drop quantization through a combination of quantum geometry and Aharonov–Casher effect. Topological excitons and their superfluid phase could be realized in flat bands of twisted Van der Waals heterostructures.

Science & Technology - Other Topics↗

Cobalt-based pyroxenes: A new playground for Kitaev physics

Recent advances in the study of cobaltites have unveiled their potential as a promising platform for realizing Kitaev physics in honeycomb systems and the Ising model in weakly coupled chain materials. In this manuscript, we explore the magnetic properties of pyroxene SrCoGe 2 O 6 using a combination of neutron scattering, ab initio methods, and linear spin-wave theory. Through careful examination of inelastic neutron scattering powder spectra, we propose a modified Kitaev model to accurately describe the twisted chains of edge-sharing octahedra surrounding Co 2+ ions. The extended Kitaev–Heisenberg model, including a significant anisotropic bond-dependent exchange term with K/|J| = 0.96, is identified as the key descriptor of the magnetic interactions in SrCoGe 2 O 6 . Furthermore, our heat capacity measurements reveal an effect of an external magnetic field (approximately 13 T) which shifts the system from a fragile antiferromagnetic ordering with T N = 9 K to a field-induced state. We argue that pyroxenes, particularly those modified by substituting Ge with Si and its less extended p orbitals, emerge as a platform for the Kitaev model. This opens up possibilities for advancing our understanding of Kitaev physics.

36 MATERIALS SCIENCE↗

State-dependent motion of a genetically encoded fluorescent biosensor

Genetically encoded biosensors can measure biochemical properties such as small-molecule concentrations with single-cell resolution, even in vivo. Despite their utility, these sensors are “black boxes”: Very little is known about the structures of their low- and high-fluorescence states or what features are required to transition between them. We used LiLac, a lactate biosensor with a quantitative fluorescence-lifetime readout, as a model system to address these questions. X-ray crystal structures and engineered high-affinity metal bridges demonstrate that LiLac exhibits a large interdomain twist motion that pulls the fluorescent protein away from a “sealed,” high-lifetime state in the absence of lactate to a “cracked,” low-lifetime state in its presence. Understanding the structures and dynamics of LiLac will help to think about and engineer other fluorescent biosensors.

Rosen, Paul C. (ORCID:000000017414454X)↗

Electric field reversals resulting from voltage waveform tailoring in Ar/O 2 capacitively coupled plasmas sustained in asymmetric systems

The etching of nanometer scale high-aspect-ratio (HAR) features into dielectric materials in low pressure radio frequency excited plasmas is often accompanied by charge accumulation inside the features which can slow etching rates and produce distortions such as twisting. The intra feature charging is at least partially produced by differences in electron and ion energy and angular distributions (EADs). Positive ions, accelerated to high energies having narrow angular spreads by the sheath electric field, can penetrate deeply into HAR features. Electrons typically arrive at the wafer with nearly thermal and isotropic distributions and do not penetrate deeply into HAR features. These disparities lead to differential charging of the inside of the feature, which can lead to reductions in etch rate and feature distortion due to ion deflection. With in-creasing aspect ratio of features, charging challenges are expected to continue for the foreseeable future. In this work, the use of tailored voltage waveforms in geometrically asymmetric capacitively coupled plasmas sustained in Ar/O 2 at 40 mTorr was computationally investigated with the goal of shaping the EAD of electrons incident onto the substrate to address differential charging. The tailored waveform consisted of a sinusoidal wave and its higher harmonics with a fundamental frequency of 1 MHz. Further, we found that electric field reversals in the sheath and presheath can occur during the anodic portion of the cycle. The electric field reversal increases the energy and decreases the angular spread of electrons incident onto the substrate. The magnitude of the electric field reversal can be controlled by the phase angle of the even harmonics and the gas composition. Due to its electronegative nature, increasing mole fractions of O 2 impedes electron transport to the surface which further increases the electric field reversal.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

Non-Hermitian topological states in 2D line-graph lattices: evolving triple exceptional points on reciprocal line graphs

Non-Hermitian (NH) topological states, such as the doubly-degenerate nodes dubbed as exceptional points (EPs) in Bloch band structure of 2D lattices driven by gain and loss, have attracted much recent interest. We demonstrate theoretically that in the three-site edge-centered lattices, i.e. the so-called line-graph lattices, such as kagome lattice which is a line graph of hexagonal lattice, there exist three types of triply-degenerate EPs evolving intriguingly on another set of line graphs in the reciprocal space. A single TEP (STEP) with ±1/3 topological charge moves faithfully along the edges of reciprocal line graphs with varying gain and loss, while two STEPs merge distinctively into one unconventional orthogonal double TEP (DTEP) with ±2/3 charge at the vertices, which is characterized with two ordinary self-orthogonal eigenfunctions but one surprising 'orthogonal' eigenfunction. Differently, in a modified line-graph lattice with an off-edge-center site, the ordinary coalesced state of DTEPs emerges with three identical self-orthogonal eigenfunctions. Such NH states and their evolution can be generally realized in various artificial systems, such as photonic and sonic crystals, where light and sonic vortex beams with different fractional twisting can be found. Our findings shed new light on fundamental understanding of gapless topological states in NH systems in terms of creation and evolution of high-order EPs, and open up new research directions to further link line graph and flow network theory coupled with topological physics, especially under non-equilibrium gain/loss conditions.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Wind turbine blade design with airfoil shape control using invertible neural networks

Wind turbine blade design is a highly multidisciplinary process that involves aerodynamics, structures, controls, manufacturing, costs, and other considerations. More efficient blade designs can be found by controlling the airfoil cross-sectional shapes simultaneously with the bulk blade twist and chord distributions. Prior work has focused on incorporating panel-based aerodynamic solvers with a blade design framework to allow for airfoil shape control within the design loop in a tractable manner. Including higher fidelity aerodynamic solvers, such as computational fluid dynamics, makes the design problem computationally intractable. In this work, we couple an invertible neural network trained on high-fidelity airfoil aerodynamic data to a turbine design framework to enable the design of airfoil cross sections within a larger blade design problem. We detail the methodology of this coupled framework and showcase its efficacy by aerostructurally redesigning the IEA 15-MW reference wind turbine blade. The coupled approach reduces the cost of energy by 0.9% compared to a more conventional design approach. This work enables the inclusion of high-fidelity aerodynamic data earlier in the design process, reducing cycle time and increasing certainty in the performance of the optimal design.

17 WIND ENERGY↗

3d TQFTs from Argyres–Douglas theories

We construct a new class of three-dimensional topological quantum field theories (3d TQFTs) by considering generalized Argyres–Douglas theories on S 1 × M 3 with a non-trivial holonomy of a discrete global symmetry along the S 1 . For the minimal choice of the holonomy, the resulting 3d TQFTs are non-unitary and semisimple, thus distinguishing themselves from theories of Chern–Simons and Rozansky–Witten types respectively. Changing the holonomy performs a Galois transformation on the TQFT, which can sometimes give rise to more familiar unitary theories such as the ${\left({G}_{2}\right)}_{1}$ and ${\left({F}_{4}\right)}_{1}$ Chern–Simons theories. Our construction is based on an intriguing relation between topologically twisted partition functions, wild Hitchin characters, and chiral algebras which, when combined together, relate Coulomb branch and Higgs branch data of the same 4d $\mathcal{N}=2$ theory. Finally, we test our proposal by applying localization techniques to the conjectural $\mathcal{N}=1$ UV Lagrangian descriptions of the (A 1 , A 2 ), (A 1 , A 3 ) and (A 1 , D 3 ) theories.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Duality defect of the monster CFT

Abstract We show that the fermionization of the Monster CFT with respect to Z 2 A is the tensor product of a free fermion and the Baby Monster CFT. The chiral fermion parity of the free fermion implies that the Monster CFT is self-dual under the Z 2 A orbifold, i.e. it enjoys the Kramers–Wannier duality. The Kramers–Wannier duality defect extends the Monster group to a larger category of topological defect lines that contains an Ising subcategory. We introduce the defect McKay – Thompson series defined as the Monster partition function twisted by the duality defect, and find that the coefficients can be decomposed into the dimensions of the (projective) irreducible representations of the Baby Monster group. We further prove that the defect McKay–Thompson series is invariant under the genus-zero congruence subgroup 16 D 0 of P S L ( 2 , Z ) .

Physics↗

A perturbative CFT dual for pure NS–NS AdS 3 strings

We construct a conformal field theory dual to string theory on AdS 3 with pure NS–NS flux. It is given by a symmetric orbifold of a linear dilaton theory deformed by a marginal operator from the twist-2 sector. We compute two- and three-point functions on the CFT side to 4th order in conformal perturbation theory at large N. They agree with the string computation at genus 0, thus providing ample evidence for a duality. We also show that the full spectra of both short and long strings on the CFT and the string side match. Furthermore, the duality should be understood as perturbative in N –1 .

97 MATHEMATICS AND COMPUTING↗

Full-film dry transfer of MBE-grown van der Waals materials

Abstract Molecular beam epitaxy (MBE) has been used to create high-quality, large-scale two-dimensional van der Waals (2D vdW) materials. However, due to the strong adhesion between the substrate and deposited materials, the peel-off and dry transfer of MBE-grown vdW films onto other substrates has been challenging. This limits the study and use of MBE films for heterogeneous integration including stacked and twisted heterostructures. In this work, we develop a polymer-assisted dry transfer method and successfully perform full-film transfer of various MBE-grown 2D vdW materials including transition metal dichalcogenides, topological insulators and 2D magnets. In particular, we transfer air-sensitive 2D magnets, characterize their magnetic properties, and compare them with as-grown materials. The results show that the transfer technique does not degrade the magnetic properties, with the Curie temperature and hysteresis loops exhibiting similar behaviors after the transfer. Our results enable further development of heterogeneous integration of 2D vdW materials based on MBE growth.

Li, Ziling (ORCID:0000000203537036)↗

Chandra view of Abell 407: the central compact group of galaxies and the interaction between the radio AGN and the ICM

ABSTRACT Abell 407 (A407) is a unique galaxy cluster hosting a central compact group of nine galaxies (named as ‘Zwicky’s Nonet’; G1–G9 in this work) within a 30 kpc radius region. The cluster core also hosts a luminous radio active galactic nucleus (AGN), 4C 35.06 with helically twisted jets extending over 200 kpc. With a 44 ks Chandra observation of A407, we characterize the X-ray properties of its intracluster medium and central galaxies. The mean X-ray temperature of A407 is 2.7 keV and the M200 is $1.9 \times 10^{14}\, {\mathrm{M}_{\odot }}$. We suggest that A407 has a weak cool core at r < 60 kpc scales and at its very centre, <1–2 kpc radius, a small galaxy corona associated with the strong radio AGN. We also conclude that the AGN 4C 35.06 host galaxy is most likely G3. We suggest that the central group of galaxies is undergoing a ‘slow merge’ procedure. The range of the merging time-scale is 0.3 ∼ 2.3 Gyr and the stellar mass of the future brightest cluster galaxy (BCG) will be $7.4\times 10^{11} \, \mathrm{M}_{\odot }$. We find that the regions that overlap with the radio jets have higher temperature and metallicity. This is consistent with AGN feedback activity. The central entropy is higher than that for other clusters, which may be due to the AGN feedback and/or merging activity. With all these facts, we suggest that A407 is a unique and rare system in the local universe that could help us to understand the formation of a massive BCG.

79 ASTRONOMY AND ASTROPHYSICS↗

Discovery of extreme, roughly daily superflares on the recurrent nova V2487 Oph

ABSTRACT V2487 Oph is a recurrent nova with detected eruptions in 1900 and 1998. Startlingly, V2487 Oph shows flares, called ‘Superflares’, with up to 1.10 mag amplitude, fast rises of under one-minute, always with an initial impulsive spike followed by a roughly exponential tail, typically one-hour durations, and with random event times averaging once-per-day. The typical flare energy E is over 1038 erg, while the yearly energy budget is 1041 erg. V2487 Oph Superflares obey three relations; the number distribution of flare energies scales as E−2.34 ± 0.35, the waiting time from one flare to the next is proportional to E of the first event, and flare durations scale as E0.44 ± 0.03. Scenarios involving gravitational energy and nuclear energy fail to satisfy the three relations. The magnetic energy scenario, however, can explain all three relations. This scenario has magnetic field lines above the disc being twisted and amplified by the motions of their footprints, with magnetic reconnection releasing energy that comes out as Superflare light. This exact mechanism is already well known to occur in white light solar flares, in ordinary M-type flare stars, and in the many Superflare stars observed all across the H-R diagram. Superflares on Superflare stars have rise times, light-curve shapes, and durations that are very similar to those on V2487 Oph. So we conclude that the V2487 Oph Superflares are caused by large-scale magnetic reconnection. V2487 Oph is now the most extreme Superflare star, exhibiting the largest known flare energy (1.6 × 1039 erg) and the fastest occurrence rate.

Schaefer, Bradley E.↗

Lagrangian statistics of a shock-driven turbulent dynamo in decaying turbulence

Small-scale fluctuating magnetic fields of order nG are observed in supernova shocks and galaxy clusters, where its amplification is likely caused by the Biermann battery mechanism. However, these fields cannot be amplified further without the turbulent dynamo, which generates magnetic energy through the stretch-twist-fold (STF) mechanism. Thus, we present here novel 3D magnetohydrodynamic (MHD) simulations of a laser-driven shock propagating into a stratified, multiphase medium, to investigate the post-shock turbulent magnetic field amplification via the turbulent dynamo. The configuration used here is currently being tested in the shock tunnel at the National Ignition Facility (NIF). In order to probe the statistical properties of the post-shock turbulent region, we use 384 × 512 × 384 tracers to track its evolution through the Lagrangian framework, thus providing a high-fidelity analysis of the shocked medium. Our simulations indicate that the growth of the magnetic field, which accompanies the near-Saffman kinetic energy decay (E kin ∝ t -1.15 ) without turbulence driving, exhibits slightly different characteristics as compared to periodic box simulations. Seemingly no distinct phases exist in its evolution because the shock passage and time to observe the magnetic field amplification during the turbulence decay are very short (~0.3 of a turbulent turnover time). Yet, the growth rate is still consistent with those expected for compressive (curl-free) turbulence driving in subsonic, compressible turbulence. Phenomenological understanding of the dynamics of the magnetic and velocity fields are also elucidated via Lagrangian frequency spectra, which are consistent with the expected inertial range scalings in the Eulerian–Lagrangian bridge.

79 ASTRONOMY AND ASTROPHYSICS↗

Properties of a fading AGN from SDSS-IV MaNGA

ABSTRACT We identify a fading AGN SDSS J220141.64+115124.3 from the internal Product Launch-11 (MPL-11) in Mapping Nearby Galaxies at Apache Point Observatory (MaNGA) survey. The central region with a projected radius of $\sim$2.4 kpc is characterized as LINER-like line ratios while the outskirts extended to $\sim$15 kpc show Seyfert-like line ratios. The ${\rm{[O {\small III}]}}$$\lambda$5007 luminosity of the Seyfert regions is a factor of 37 (2) higher than the LINER regions without (with) dust attenuation correction, suggesting that the AGN activity decreases at least $\sim$8 $\times$ 10$^3$ yr ($\sim$2.4 kpc/light-speed) ago. We model the emission line spectra in the central region with double Gaussian components (a narrow core and a broad wing) and analyse the properties of each component. The narrow core component mostly co-rotates with the stellar disc, whereas the broad wing component with a median of the velocity dispersion $\sim$300 km s$^{-1}$ is related to a wind outflow. The kinematic position angle (PA) of the ionized gas shows an $\sim 20^{\circ }$ twist from the galaxy centre to 1.5 effective radius. The median of the PA difference between the gas and stellar components is as large as $\sim 50^{\circ }$ within 0.4 effective radius. The tidal feature in DESI image and star–gas misalignment suggest this galaxy is a merger remnant. Combining all these observational results as well as public available X-ray and MIR luminosities, we confirm this is a fading AGN, the merger process kick-started the central engine to quasar phase which ionized gas composed of tidal debris, and now the activity of the central black hole decreases. The discontinuity in ${\rm{[O {\small III}]}}$$\lambda$5007 flux and EQW maps is due to multiple AGN outbursts triggered by merger remnant gas inflows.

Mo, Hao (ORCID:0000000234430768)↗

Structures of CTCF–DNA complexes including all 11 zinc fingers

The CCCTC-binding factor (CTCF) binds tens of thousands of enhancers and promoters on mammalian chromosomes by means of its 11 tandem zinc finger (ZF) DNA-binding domain. In addition to the 12–15-bp CORE sequence, some of the CTCF binding sites contain 5' upstream and/or 3' downstream motifs. Here, we describe two structures for overlapping portions of human CTCF, respectively, including ZF1–ZF7 and ZF3–ZF11 in complex with DNA that incorporates the CORE sequence together with either 3' downstream or 5' upstream motifs. Like conventional tandem ZF array proteins, ZF1–ZF7 follow the right-handed twist of the DNA, with each finger occupying and recognizing one triplet of three base pairs in the DNA major groove. ZF8 plays a unique role, acting as a spacer across the DNA minor groove and positioning ZF9–ZF11 to make cross-strand contacts with DNA. We ascribe the difference between the two subgroups of ZF1–ZF7 and ZF8–ZF11 to residues at the two positions -6 and -5 within each finger, with small residues for ZF1–ZF7 and bulkier and polar/charged residues for ZF8–ZF11. ZF8 is also uniquely rich in basic amino acids, which allows salt bridges to DNA phosphates in the minor groove. Highly specific arginine–guanine and glutamine–adenine interactions, used to recognize G:C or A:T base pairs at conventional base-interacting positions of ZFs, also apply to the cross-strand interactions adopted by ZF9–ZF11. The differences between ZF1–ZF7 and ZF8–ZF11 can be rationalized structurally and may contribute to recognition of high-affinity CTCF binding sites.

59 BASIC BIOLOGICAL SCIENCES↗

Tunable quantum anomalous Hall effects in ferromagnetic van der Waals heterostructures

ABSTRACT The quantum anomalous Hall effect (QAHE) has unique advantages in topotronic applications, but it is still challenging to realize the QAHE with tunable magnetic and topological properties for building functional devices. Through systematic first-principles calculations, we predict that the in-plane magnetization induced QAHE with Chern numbers C = ±1 and the out-of-plane magnetization induced QAHE with high Chern numbers C = ±3 can be realized in a single material candidate, which is composed of van der Waals (vdW) coupled Bi and MnBi2Te4 monolayers. The switching between different phases of QAHE can be controlled in multiple ways, such as applying strain or (weak) magnetic field or twisting the vdW materials. The prediction of an experimentally available material system hosting robust, highly tunable QAHE will stimulate great research interest in the field. Our work opens a new avenue for the realization of tunable QAHE and provides a practical material platform for the development of topological electronics.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗