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At least 1,441 records · Page 80

A full-dimensional quantum dynamics study of the mode specificity in the H + HOD abstraction reaction

We employ the initial state-selected time-dependent wave packet approach to an atom-triatom reaction to study the H + HOD → OH + HD/OD + H{sub 2} reaction without the centrifugal sudden approximation, based on an accurate potential energy surface which was recently developed by neural network fitting to high level ab initio energy points. The total reaction probabilities and integral cross sections, which are the exact coupled-channel results, are calculated for the HOD reactant initially in the ground and several vibrationally excited states, including the bending excited state, OD stretching excited states, OH stretching excited states, and combined excitations of them. The reactivity enhancements from different initial states of HOD are presented, which feature strong bond-selective effects of the reaction dynamics. The current results for the product branching ratios, reactivity enhancements, and relative cross sections are largely improved over the previous calculations, in quantitatively good agreement with experiment. The thermal rate constant for the title reaction and the contributions from individual vibrational states of HOD are also obtained.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Photodissociation of H 2 on Ag and Au Nanoparticles: Effect of Size and Plasmon versus Interband Transitions on Threshold Intensities for Dissociation

This Article provides new insights concerning the simulation of plasmon-driven chemical reactions using real-time TDDFT based on the tight-binding electronic structure code DFTB+, with applications to the dissociation of H 2 on octahedral silver and gold nanoparticles with 19–489 atoms. A new component of these calculations involves sampling a 300 K canonical ensemble to determine the distribution of possible outcomes of the calculations, and with this approach we are able to determine the threshold for dissociation as a function of laser intensity, wavelength, and nanocluster size. We show that the threshold intensity varies as an inverse power of nanocluster size, which makes it possible to extrapolate the results to sizes that are more typical of experimental studies. The intensities obtained from this extrapolation are around a factor of 100 above powers used in the pulsed experiments. This is a closer comparison of theory and experiment than has been obtained in previous real-time simulations, and the remaining discrepancy can be understood in terms of electromagnetic hot spots that are associated with cluster formation. Here, we also compare the influence of plasmon excitation versus interband excitation on reaction thresholds, revealing that for silver clusters plasmon excitation leads to lower thresholds, but for gold clusters interband excitation is more effective. Our study also includes an analysis of charge transfer to and from the H 2 molecule, and a determination of orbital populations during and after the pulse, showing the correlation between metal excitations and the location of the antibonding level of H 2 .

77 NANOSCIENCE AND NANOTECHNOLOGY↗

Numerical investigation of the spatiotemporal distribution of chemical species in an atmospheric surface barrier-discharge

Using a one dimensional time dependent convection-reaction-diffusion model, the temporal and spatial distributions of species propagating downstream of an atmospheric pressure air surface barrier discharge was studied. It was found that the distribution of negatively charged species is more spatially spread compared to positive ions species, which is attributed to the diffusion of electrons that cool down and attach to background gas molecules, creating different negative ions downstream of the discharge region. Given the widespread use of such discharges in applications involving the remote microbial decontamination of surfaces and liquids, the transport of plasma generated reactive species away from the discharge region was studied by implementing mechanical convection through the discharge region. It was shown that increased convection causes the spatial distribution of species density to become uniform. It was also found that many species have a lower density close to the surface of the discharge as convection prevents their accumulation. While for some species, such as NO{sub 2}, convection causes a general increase in the density due to a reduced residence time close to the discharge region, where it is rapidly lost through reactions with OH. The impact of the applied power was also investigated, and it was found that the densities of most species, whether charged or neutral, are directly proportional to the applied power.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

DNA Reaction–Diffusion Attractor Patterns

Abstract Living systems can form and recover complex chemical patterns with precisely sized features in the ranges of tens or hundreds of microns. We show how designed reaction–diffusion processes can likewise produce precise patterns, termed attractor patterns, that reform their precise shape after being perturbed. We use oligonucleotide reaction networks, photolithography, and microfluidic delivery to form precisely controlled attractor patterns and study the responses of these patterns to different localized perturbations. Linear and “hill”‐shaped patterns formed and stabilized into shapes and at time scales consistent with reaction–diffusion models. When patterns were perturbed in particular locations with UV light, they reliably reformed their steady‐state profiles. Recovery also occurred after repeated perturbations. By designing the far‐from‐equilibrium dynamics of a chemical system, this study shows how it is possible to design spatial patterns of molecules that are sustained and regenerated by continually evolving towards a specific steady state configuration.

Dorsey, Phillip James↗

First demonstration of a triton beam using target normal sheath acceleration

Tritiated titanium targets were irradiated by the short-pulse OMEGA EP laser (1.25 kJ, 10 ps) to generate a laser accelerated pulsed beam of tritons by target normal sheath acceleration. Using a Thomson parabola, the beam was found to contain 10 12 tritons per pulse, with a mean energy of 2.2 MeV and an exponential tail reaching up to 10 MeV. In a separate experiment, the triton beam was directed onto a secondary deuterated polyethylene (CD) target to induce deuterium–tritium (D–T) nuclear reactions. Using neutron time-of-flight spectrometers, approximately 10 8 D–T fusion neutrons were observed per laser pulse. Furthermore, this triton beam presents new research opportunities for the study of the 3 H(t, 2n) 4 He reaction and di-neutron transfers to lithium and beryllium that may produce exotic neutron-rich nuclei of interest to basic nuclear science, astrophysics, and inertial confinement fusion technology.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

Surface engineering of hierarchical platinum-cobalt nanowires for efficient electrocatalysis

Despite intense research in past decades, the lack of high-performance catalysts for fuel cell reactions remains a challenge in realizing fuel cell technologies for transportation applications. Here we report a facile strategy for synthesizing hierarchical platinum-cobalt nanowires with high-index, platinum-rich facets and ordered intermetallic structure. These structural features enable unprecedented performance for the oxygen reduction and alcohol oxidation reactions. The specific/mass activities of the platinum-cobalt nanowires for oxygen reduction reaction are 39.6/33.7 times higher than commercial Pt/C catalyst, respectively. Density functional theory simulations reveal that the active threefold hollow sites on the platinum-rich high-index facets provide an additional factor in enhancing oxygen reduction reaction activities. The nanowires are stable in the electrochemical conditions and also thermally stable. Furthermore, this work may represent a key step towards scalable production of high performance platinum-based nanowires for applications in catalysis and energy conversion.

36 MATERIALS SCIENCE↗

In vitro Characterization of Phenylacetate Decarboxylase, a Novel Enzyme Catalyzing Toluene Biosynthesis in an Anaerobic Microbial Community

Anaerobic bacterial biosynthesis of toluene from phenylacetate was reported more than two decades ago, but the biochemistry underlying this novel metabolism has never been elucidated. Here we report results of in vitro characterization studies of a novel phenylacetate decarboxylase from an anaerobic, sewage-derived enrichment culture that quantitatively produces toluene from phenylacetate; complementary metagenomic and metaproteomic analyses are also presented. Among the noteworthy findings is that this enzyme is not the well-characterized clostridial p-hydroxyphenylacetate decarboxylase (CsdBC). However, the toluene synthase under study appears to be able to catalyze both phenylacetate and p-hydroxyphenylacetate decarboxylation. Observations suggesting that phenylacetate and p-hydroxyphenylacetate decarboxylation in complex cell-free extracts were catalyzed by the same enzyme include the following: (i) the specific activity for both substrates was comparable in cell-free extracts, (ii) the two activities displayed identical behavior during chromatographic separation of cell-free extract s, (iii) both activities were irreversibly inactivated upon exposure to O 2, and (iv) both activities were similarly inhibited by an amide analog of p-hydroxyphenylacetate. Based upon these and other data, we hypothesize that the toluene synthase reaction involves a glycyl radical decarboxylase. This first-time study of the phenylacetate decarboxylase reaction constitutes an important step in understanding and ultimately harnessing it for making bio-based toluene.

59 BASIC BIOLOGICAL SCIENCES↗

Production of OH from photolysis of HOCl at 307-309 nm

Laser-induced fluorescence has been used to measure the amount of OH produced in the laser photolysis of HOCl at 310 nm. The HOCl was generated by the Cl2O + H2O and by the HCl + Cl2O reactions. The laser technique samples OH on a microsecond time scale so that secondary radical reactions cannot contribute significantly to the observed signals. The fluorescence signals were calibrated with O3-H2O mixtures, the reactions O3 + h(nu) yields O(1D) + O2 and O(1D) + H2O yields 2OH yielding known amounts of OH. The value for the absorption cross section of HOCl at 310 nm has been determined to be 6 x 10 to the -20th sq cm, assuming K(eq) = 0.082 for the Cl2O + H2O yields 2HOCl system and assuming unit quantum yield for the production of OH. The present investigation further supports earlier experimental work concluding that HOCl will photodissociate rapidly and will not be an important holding tank for chlorine in the stratosphere. These results are in disagreement with theoretical calculations of the UV absorption spectrum of HOCl in the 300-350-nm wavelength region.

Molina, M. J.↗

A large eddy simulation scheme for turbulent reacting flows

The recent development of the dynamic subgrid-scale (SGS) model has provided a consistent method for generating localized turbulent mixing models and has opened up great possibilities for applying the large eddy simulation (LES) technique to real world problems. Given the fact that the direct numerical simulation (DNS) can not solve for engineering flow problems in the foreseeable future (Reynolds 1989), the LES is certainly an attractive alternative. It seems only natural to bring this new development in SGS modeling to bear on the reacting flows. The major stumbling block for introducing LES to reacting flow problems has been the proper modeling of the reaction source terms. Various models have been proposed, but none of them has a wide range of applicability. For example, some of the models in combustion have been based on the flamelet assumption which is only valid for relatively fast reactions. Some other models have neglected the effects of chemical reactions on the turbulent mixing time scale, which is certainly not valid for fast and non-isothermal reactions. The probability density function (PDF) method can be usefully employed to deal with the modeling of the reaction source terms. In order to fit into the framework of LES, a new PDF, the large eddy PDF (LEPDF), is introduced. This PDF provides an accurate representation for the filtered chemical source terms and can be readily calculated in the simulations. The details of this scheme are described.

Gao, Feng↗

Effect of photochemical models on calculated equilibria and cooling rates in the stratosphere

The determination of the relaxation time of a temperature perturbation in the stratosphere must take into account the effects of the absorption of solar energy by ozone, while the ozone density itself is dependent on temperature. A photochemical model, consisting of continuity equations for each of 29 constituents with reaction rates and adjustment times, is used to obtain the vertical distribution of ozone. The altitude range from 35 to 60 km in non-Arctic regions is shown to be in approximate joint radiative-photochemical equilibrium. The temperature and ozone distributions are thus well buffered. Modest changes in ozone and temperature were calculated on the basis of this model from large changes in cooling rates and reaction rates, and the results are shown to be more in line with actual observations. The importance of estimating the mixing ratios for NO and H2O is emphasized.

Blake, D.↗

Directed Flow and the Chiral Magnetic Effect in Ultrarelativistic Collisions with CMS at the LHC (Final Technical Report for DOE Grant # DE-SC0021080)

This Final Technical Report covers the years of activity for the Grant DE-SC0021080. It reflects the efforts of Alice Mignerey, the PI, Timothy Koeth, the co-PI, graduate students Eric Adams and Samuel Lascio, and undergraduates Alyssa Marinelli and Max Bernard. Results from three separate aspects of the project are presented: 1) understanding the radiation damage of the positive and negative sides of the Spectator Reaction Plane Detector (SRPD) for data from the 2018 PbPb run at the CERN LHC. 2) Results of the directed flow in PbPb collisions at √sN N = 5.02 TeV. 3) Activation studies of the sectors of the positive side of the SRPD and radiation damage studies on fused quartz using the Maryland 4-MeV electron accelerator. The most significant result is that the reaction plane derived directed flow for both participant and spectator reaction planes is many times larger than that obtained by ALICE.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

SEARCHING FOR INTERSTELLAR MOLECULE BUTATRIENYLIDENE IN REACTION C{sub 2} + C{sub 2}H{sub 4}

We investigated the reaction C{sub 2}(X {sup 1}{Sigma}{sup +} {sub g}/a {sup 3}{Pi} {sub u}) + C{sub 2}H{sub 4} at collision energy 5.0 kcal mol{sup -1} in a crossed molecular-beam apparatus using selective photoionization. Time-of-flight and photoionization spectra of products C{sub 4}H{sub 3} and C{sub 4}H{sub 2} were measured. From the best simulation of product time-of-flight spectra, a low-energy-biased translational-energy distribution and an isotropic angular distribution are derived for product channels C{sub 4}H{sub 3} + H and C{sub 4}H{sub 2} + H{sub 2} that have average translational-energy releases of 11 and 20 kcal mol{sup -1}, respectively. Product C{sub 4}H{sub 3} is identified as H{sub 2}CCCCH because its ionization threshold 8.0 {+-} 0.2 eV and maximal translational-energy release 42 kcal mol{sup -1} coincide with that of product channel H{sub 2}CCCCH + H. H{sub 2}CCCC (butatrienylidene) and HCCCCH (diacetylene) might have contributions to product C{sub 4}H{sub 2}; both isomers have ionization energies near the measured ionization threshold 10.0 {+-} 0.2 eV and the maximal translational-energy release 62 kcal mol{sup -1} is within the energetic limits of both isomeric product channels. Nonetheless, channel H{sub 2}CCCC + H{sub 2} is suggested to be more dominant than channel HCCCCH + H{sub 2} because the maximal translational-energy release is in good agreement with the available energy of the former channel and the former channel is 3.8 times the branching ratio of the later channel predicted by Rice-Ramsperger-Kassel-Marcus calculations. C{sub 4}H{sub 2} is identified for the first time in the barrierless reaction C{sub 2} + C{sub 2}H{sub 4} which has never been considered in any astronomical chemical networks. This work sheds new light on the formation of butatrienylidene/diacetylene in cold interstellar media where C{sub 2} and C{sub 2}H{sub 4} are abundant.

74 ATOMIC AND MOLECULAR PHYSICS↗

PIROCK: A swiss-knife partitioned implicit–explicit orthogonal Runge–Kutta Chebyshev integrator for stiff diffusion–advection–reaction problems with or without noise

A partitioned implicit–explicit orthogonal Runge–Kutta method (PIROCK) is proposed for the time integration of diffusion–advection–reaction problems with possibly severely stiff reaction terms and stiff stochastic terms. The diffusion terms are solved by the explicit second order orthogonal Chebyshev method (ROCK2), while the stiff reaction terms (solved implicitly) and the advection and noise terms (solved explicitly) are integrated in the algorithm as finishing procedures. It is shown that the various coupling (between diffusion, reaction, advection and noise) can be stabilized in the PIROCK method. The method, implemented in a single black-box code that is fully adaptive, provides error estimators for the various terms present in the problem, and requires from the user solely the right-hand side of the differential equation. Numerical experiments and comparisons with existing Chebyshev methods, IMEX methods and partitioned methods show the efficiency and flexibility of our new algorithm.

97 MATHEMATICS AND COMPUTING↗

Biomass Catalytic Pyrolysis on Ni/ZSM-5: Effects of Nickel Pretreatment and Loading

Here in this work, Ni/ZSM-5 catalysts with varied nickel loadings were evaluated for their ability to produce aromatic hydrocarbons by upgrading of pine pyrolysis vapors. The effect of catalyst pretreatment by hydrogen reduction was also investigated. Results indicate that the addition of nickel increases the yield of aromatic hydrocarbons while simultaneously increasing the conversion of oxygenates, relative to ZSM-5, and these effects are more pronounced with increasing nickel loading. Additionally, while initial activity differences were observed between the oxidized and reduced forms of nickel on ZSM-5 (i.e., NiO/ZSM-5 versus Ni/ZSM-5), the activity of both catalysts converges with increasing time on stream. These reaction results coupled with characterization of pristine and spent catalysts suggest that the catalysts reach similar active states during catalytic pyrolysis, regardless of pretreatment, as NiO undergoes in situ reduction to Ni by biomass pyrolysis vapors. This reduction of NiO to Ni was confirmed by reaction results and characterization by NH 3 temperature-programmed desorption, temperature-programmed reduction, and X-ray diffraction. This finding is significant in that the ability to reduce or eliminate the need for a pre-reaction H 2 reduction of Ni-modified zeolite catalysts could reduce process complexity and operating costs in a biorefinery-based vapor-phase upgrading process to produce biomass-derived fuels and chemicals. The ability to monitor catalyst activity in real time with a molecular beam mass spectrometer used to measure uncondensed, hot pyrolysis vapors allows for an improved understanding of the mechanism for improved activity with Ni addition to ZSM-5, which is attributed to the ability to prevent deactivation by deposition of coke and capping of zeolite micropores.

09 BIOMASS FUELS↗

Understanding H 2 Evolution from the Decomposition of Dibutylmagnesium Isomers Using in-Situ X-ray Diffraction Coupled with Mass Spectroscopy

Alkylmagnesium compounds such as dibutylmagnesium can be effectively decomposed to produce MgH 2 and Mg metal for applications such as hydrogen storage, single site catalysis, and powder metallurgy or as the last step of comprehensive processes to produce Mg metal from magnesium salts. For these applications it is important to understand the decomposition reactions of dibutylmagnesium and to quantify its decomposition products. In this study, to avoid interference from air and moisture, an in situ X-ray diffraction (XRD) coupled with mass spectroscopy system was developed to investigate phase changes and released products in real time for the decomposition reactions. For the dibutylmagnesium (MgBu 2 n-n ) with two n -butyl groups, transformation to MgH 2 occurred at 250 °C and transformation to Mg metal occurred near 384 °C. The diffraction data suggest the possibility of an intermediate phase with one butyl group formed during the transformation to MgH 2 . Decomposition of MgH 2 under vacuum is accelerated by eliminating H 2 from the system as it is evolved. The sec- butyl n -butylmagnesium (MgBu 2 s-n ) was observed to decompose at as low as 50 °C, indicating the increased lability of the sec -butyl group in the dibutylmagnesium isomer. Thermogravimetric analysis (TGA) for the MgBu 2 n-n and MgBu 2 s-n loaded in air-free conditions recorded higher than 98% conversion to MgH 2 .

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Unveiling the Essential Parameters Driving Mineral Reactions during CO2 Storage in Carbonate Aquifers through Proxy Models

Numerical simulation is a commonly employed technique for studying carbon dioxide (CO2) storage processes in porous media, particularly saline aquifers. It enables the representation of diverse trapping mechanisms and the assessment of CO2 retention capacity within the subsurface. The intricate physicochemical phenomena involved necessitate the incorporation of multiphase flow, accurate depiction of fluid and rock properties, and their interactions. Among these factors, geochemical reaction rates and mechanisms are pivotal for successful CO2 trapping in carbonate reactive rocks. However, research on kinetic parameters and the influence of lithology on CO2 storage remains limited. This limitation is partly due to the challenges faced in laboratory experiments, where the time scale of the reactions and the lack of in situ conditions hinder accurate measurement of mineral reaction rates. This study employs proxy models constructed using response surfaces calibrated with simulation results to address uncertainties associated with geochemical reactions. Monte Carlo simulation is utilized to explore a broader range of parameters and identify influential factors affecting CO2 mineralization. The findings indicate that an open database containing kinetic parameters can support uncertainty assessment. Additionally, the proxy models effectively represent objective functions related to CO2 injectivity and mineralization, with calcite dissolution playing a predominant role. pH, calcite concentration, and CO2 injection rate significantly impact dolomite precipitation, while quartz content remains unaffected.

58 GEOSCIENCES↗

Quantitation of Human Papillomavirus DNA in Plasma of Oropharyngeal Carcinoma Patients

Purpose: To determine whether human papillomavirus (HPV) DNA can be detected in the plasma of patients with HPV-positive oropharyngeal carcinoma (OPC) and to monitor its temporal change during radiotherapy. Methods and Materials: We used polymerase chain reaction to detect HPV DNA in the culture media of HPV-positive SCC90 and VU147T cells and the plasma of SCC90 and HeLa tumor-bearing mice, non-tumor-bearing controls, and those with HPV-negative tumors. We used real-time quantitative polymerase chain reaction to quantify the plasma HPV DNA in 40 HPV-positive OPC, 24 HPV-negative head-and-neck cancer patients and 10 non-cancer volunteers. The tumor HPV status was confirmed by p16{sup INK4a} staining and HPV16/18 polymerase chain reaction or HPV in situ hybridization. A total of 14 patients had serial plasma samples for HPV DNA quantification during radiotherapy. Results: HPV DNA was detectable in the plasma samples of SCC90- and HeLa-bearing mice but not in the controls. It was detected in 65% of the pretreatment plasma samples from HPV-positive OPC patients using E6/7 quantitative polymerase chain reaction. None of the HPV-negative head-and-neck cancer patients or non-cancer controls had detectable HPV DNA. The pretreatment plasma HPV DNA copy number correlated significantly with the nodal metabolic tumor volume (assessed using {sup 18}F-deoxyglucose positron emission tomography). The serial measurements in 14 patients showed a rapid decline in HPV DNA that had become undetectable at radiotherapy completion. In 3 patients, the HPV DNA level had increased to a discernable level at metastasis. Conclusions: Xenograft studies indicated that plasma HPV DNA is released from HPV-positive tumors. Circulating HPV DNA was detectable in most HPV-positive OPC patients. Thus, plasma HPV DNA might be a valuable tool for identifying relapse.

62 RADIOLOGY AND NUCLEAR MEDICINE↗