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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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At least 1,441 records · Page 80
All sourcesNASA NTRSDOE OSTI
DOE OSTI2021

Critical Literature Review of Quantitative Sustainability Assessment Methods for the Circular Economy

The circular economy (CE) has been proposed to be an operational framework for sustainable development that decouples economic growth from resource consumption. The CE ambition is to maximize the retention of value in products, materials, and resources in the economy over time with the help of CE strategies such as selling a service rather than a product, reusing and repairing products or their components, and recycling. The social, economic, and environmental performances of CE strategies need to be measured against their linear counterparts to avoid strategies that increase circularity but have other unintended externalities. However, there is currently no tool specifically designed to compare circular to linear systems and, thus, various methods from different fields have been applied. This session aims at reviewing, contrasting, and critiquing different methods that have been applied to assess the CE until now, along with an up to date state of the science in this field. Methods from the industrial ecology field have most often been applied to study the CE. However, the transition to CE involves both technological improvements as well as social changes. New business models such as collaborative consumption models (e.g., Uber or Airbnb) are examples of the new patterns of production and consumption of the CE, which may be difficult to analyze from a purely industrial ecology perspective. Methods from complexity science and humanities could therefore complement the industrial ecology perspective to extend the scope of the analysis. Such an approach could also answer a longstanding criticism of the CE which, in contrast with sustainability, solely focuses on the environment and the economy. Moreover, the hybridization of two or more existing methods can yield additional capabilities, which may enable the exploration of additional CE-related research questions. The 90 minutes session will have several presentations and conclude with a moderated, interactive panel discussion on how methods from different fields could be combined to harness their relative strengths.

circular economy↗
DOE OSTI2026

Automated and High-Throughput Phase Separation Control for Supramolecular Polymer Blends Enabled by Machine Learning

Supramolecular polymer blends (SPBs) offer tunable morphologies that dictate their macroscopic properties, yet their rational design is limited by the absence of predictive structure−morphology models. Here, we introduce a data-driven highthroughput workflow that integrates modular polymer synthesis, robotic formulation, automated morphology characterization, and machine learning (ML) for accelerated SPB discovery. Using a plug-and-play synthetic strategy, 33 hydrogen-bonding endfunctional homopolymers were prepared and orthogonally combined to generate 260 SPBs in 1 day. A fully automated atomic force microscopy (AFM) pipeline enabled systematic imaging, producing 2340 morphology data sets with minimal human intervention. Domain spacings were extracted through complementary imageprocessing methods and used to train ML models. A support vector regression (SVR) model accurately predicted target phase-separation sizes (50, 100, and 150 nm), which were experimentally validated. This work demonstrates the power of coupling high-throughput experimentation with ML to accelerate morphology discovery and provides one of the first large-scale experimental data sets for supramolecular polymer systems.

ML-guided polymer design↗
DOE OSTI2022

The microbiome of a bacterivorous marine choanoflagellate contains a resource-demanding obligate bacterial associate

Abstract Microbial predators such as choanoflagellates are key players in ocean food webs. Choanoflagellates, which are the closest unicellular relatives of animals, consume bacteria and also exhibit marked biological transitions triggered by bacterial compounds, yet their native microbiomes remain uncharacterized. Here we report the discovery of a ubiquitous, uncultured bacterial lineage we name Candidatus Comchoanobacterales ord. nov., related to the human pathogen Coxiella and physically associated with the uncultured marine choanoflagellate Bicosta minor . We analyse complete ‘Comchoano’ genomes acquired after sorting single Bicosta cells, finding signatures of obligate host-dependence, including reduction of pathways encoding glycolysis, membrane components, amino acids and B-vitamins. Comchoano encode the necessary apparatus to import energy and other compounds from the host, proteins for host-cell associations and a type IV secretion system closest to Coxiella’s that is expressed in Pacific Ocean metatranscriptomes. Interactions between choanoflagellates and their microbiota could reshape the direction of energy and resource flow attributed to microbial predators, adding complexity and nuance to marine food webs.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2021

Go with the flow: modeling unique biological flows in engineered in vitro platforms

Interest in recapitulating in vivo phenomena in vitro using organ-on-a-chip technology has grown rapidly and with it, attention to the types of fluid flow experienced in the body has followed suit. These platforms offer distinct advantages over in vivo models with regards to human relevance, cost, and control of inputs (e.g., controlled manipulation of biomechanical cues from fluid perfusion). Given the critical role biophysical forces play in several tissues and organs, it is therefore imperative that engineered in vitro platforms capture the complex, unique flow profiles experienced in the body that are intimately tied with organ function. In this review, we outline the complex and unique flow regimes experienced by three different organ systems: blood vasculature, lymphatic vasculature, and the intestinal system. Here, we highlight current state-of-the-art platforms that strive to replicate physiological flows within engineered tissues while introducing potential limitations in current approaches.

42 ENGINEERING↗
DOE OSTI2025

Pseudomonas aeruginosa : One Health approach to deciphering hidden relationships in Northern Portugal

Abstract Aims Antimicrobial resistance in Pseudomonas aeruginosa represents a major global challenge in public and veterinary health, particularly from a One Health perspective. This study aimed to investigate antimicrobial resistance, the presence of virulence genes, and the genetic diversity of P. aeruginosa isolates from diverse sources. Methods and results The study utilized antimicrobial susceptibility testing, genomic analysis for resistance and virulence genes, and multilocus sequence typing to characterize a total of 737 P. aeruginosa isolates that were collected from humans, domestic animals, and aquatic environments in Northern Portugal. Antimicrobial resistance profiles were analyzed, and genomic approaches were employed to detect resistance and virulence genes. The study found a high prevalence of multidrug-resistant isolates, including high-risk clones such as ST244 and ST446, particularly in hospital sources and wastewater treatment plants. Key genes associated with resistance and virulence, including efflux pumps (e.g. MexA and MexB) and secretion systems (T3SS and T6SS), were identified. Conclusions This work highlights the intricate dynamics of multidrug-resistant P. aeruginosa across interconnected ecosystems in Northern Portugal. It underscores the importance of genomic studies in revealing the mechanisms of resistance and virulence, contributing to the broader understanding of resistance dynamics and informing future mitigation strategies.

de Sousa, Telma↗
DOE OSTI2025

AmeriFlux CA-RBM Richmond Brackish Marsh

This is the AmeriFlux version of the carbon flux data for the site CA-RBM Richmond Brackish Marsh. Site Description - This site is a tidal brackish marsh on the southern side of the Sturgeon Bank Wildlife Management Area (WMA) in Richmond, British Columbia, Canada. This area is situated within the estuary of the Fraser River. The total area of Sturgeon Bank WMA is 5,152 ha, of which the tidal marsh area is 205 ha. The southern of the WMA is characterized as a brackish marsh, which transitions to a salt marsh as you go north. Human development has influenced this area for almost 200 years. Human activities in this area began in the early 1800s, which included dredging, dyke and entrainment structures, agriculture, and other uses. The areas were designated as WMA in 1998. This area experiences a semidiurnal tidal cycle. The flux tower is located near the southern edge of the marsh, where the dominant species is cattail (Typha latifolia), with a canopy height of 160 cm. The tower is in a high marsh system and was installed to analyze energy, H2O, CO2, and CH4 fluxes on June 1, 2022.

Knox, Sara [The University of British Columbia]↗
DOE OSTI2026

AmeriFlux FLUXNET-1F CA-RBM Richmond Brackish Marsh

This is the AmeriFlux Management Project (AMP) created FLUXNET-1F version of the carbon flux data for the site CA-RBM Richmond Brackish Marsh. This is the FLUXNET version of the carbon flux data for the site CA-RBM Richmond Brackish Marsh produced by applying the standard ONEFlux (1F) software. Site Description - This site is a tidal brackish marsh on the southern side of the Sturgeon Bank Wildlife Management Area (WMA) in Richmond, British Columbia, Canada. This area is situated within the estuary of the Fraser River. The total area of Sturgeon Bank WMA is 5,152 ha, of which the tidal marsh area is 205 ha. The southern of the WMA is characterized as a brackish marsh, which transitions to a salt marsh as you go north. Human development has influenced this area for almost 200 years. Human activities in this area began in the early 1800s, which included dredging, dyke and entrainment structures, agriculture, and other uses. The areas were designated as WMA in 1998. This area experiences a semidiurnal tidal cycle. The flux tower is located near the southern edge of the marsh, where the dominant species is cattail (Typha latifolia), with a canopy height of 160 cm. The tower is in a high marsh system and was installed to analyze energy, H2O, CO2, and CH4 fluxes on June 1, 2022.

Knox, Sara [The University of British Columbia]↗
DOE OSTI2021

Energy-Flow-Environment Linkage Map

Understanding how flexibility in environmental requirements can facilitate co-optimization of hydropower production outcomes and environmental outcomes is critical for future grid decision-making and operations as renewable energy resources increase. The environmental and power system outcomes connectivity linkage maps presented here provide a framework for conceptually and quantitatively linking power system outcomes to environmental outcomes through hydropower flow decisions. The Executive Summary Map serves as a starting for exploring the links between hydropower system performance outcomes and environmental outcomes. The centralized topic is “Flow from Hydropower System,” and connects the hydropower operations through “Flow through turbines” and “Non-turbine flows”, and to environmental outcomes through Reservoir elevation” and “Flow downstream of the hydropower system”. To the left of these central topics, “Hydro-mechanical operations” are linked through “Hydro-electrical operations” to “Hydropower performance outcomes” (“Reliability”, “Resilience”, “Revenue”, “Emissions”). On the right, environmental outcomes are grouped together by their physical location: “Upstream Outcomes” (“Upstream geomorphology”, “Upstream recreation”, “Upstream habitat”, “Upstream biota and biodiversity”, “Upstream water quality and greenhouse gas”), Outcomes relevant to both “Upstream/downstream or dam interface” (“Navigation”, “Dam safety and maintenance", “Human health”, “Water supply”, “Flood control”, ”Fish passage”), and “Downstream outcomes“ (e.g., “Downstream geomorphology”, “Downstream recreations”, “Downstream habitat”, “Downstream biota and biodiversity”, “Downstream water quality and greenhouse gas”). Each of these subtopics (e.g., “Hydro-mechanical operations”, “Hydro-electrical operations”, “Upstream geomorphology”, “Upstream recreation”) is further explored through their corresponding submaps. The “Read Me” file provides more detail information on map navigation. The “Models and tools database” file provides detailed information of models and tools presented in the maps.

13 HYDRO ENERGY↗
DOE OSTI2020

NCBI’s Virus Discovery Codeathon: Building “FIVE” —The Federated Index of Viral Experiments API Index

Viruses represent important test cases for data federation due to their genome size and the rapid increase in sequence data in publicly available databases. However, some consequences of previously decentralized (unfederated) data are lack of consensus or comparisons between feature annotations. Unifying or displaying alternative annotations should be a priority both for communities with robust entry representation and for nascent communities with burgeoning data sources. To this end, during this three-day continuation of the Virus Hunting Toolkit codeathon series (VHT-2), a new integrated and federated viral index was elaborated. This Federated Index of Viral Experiments (FIVE) integrates pre-existing and novel functional and taxonomy annotations and virus–host pairings. Variability in the context of viral genomic diversity is often overlooked in virus databases. As a proof-of-concept, FIVE was the first attempt to include viral genome variation for HIV, the most well-studied human pathogen, through viral genome diversity graphs. As per the publication of this manuscript, FIVE is the first implementation of a virus-specific federated index of such scope. FIVE is coded in BigQuery for optimal access of large quantities of data and is publicly accessible. Many projects of database or index federation fail to provide easier alternatives to access or query information. To this end, a Python API query system was developed to enhance the accessibility of FIVE.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2021

Lithium-Ion Battery Life Model with Electrode Cracking and Early-Life Break-in Processes

This paper develops a physically justified reduced-order capacity fade model from accelerated calendar- and cycle-aging data for 32 lithium-ion (Li-ion) graphite/nickel-manganese-cobalt (NMC) cells. The large data set reveals temperature-, charge C-rate-, depth-of-discharge-, and state of charge (SOC)-dependent degradation patterns that would be unobserved in a smaller test matrix. Model structure is informed by incremental capacity analysis that shows loss of lithium inventory and cathode-material loss as the dominant capacity fade mechanisms. The model includes terms attributable to solid-electrolyte interface (SEI) growth, electrode cracking, cycling-driven acceleration of SEI growth, and "break-in" mechanisms that slightly decrease or increase available Li inventory early in life. The study explores what mathematical couplings of these mechanisms best describe calendar aging, cycle aging, and mixed calendar/cycle aging. Various approaches are discussed for extracting relevant stress factors from complex cycling profiles to predict lifetime during real-world battery loads using models trained on constant-current laboratory test results. The complexity of the present human-driven model identification process motivates future work in machine learning to more widely search and statistically discern the optimal model that correctly extrapolates capacity fade based on physical knowledge.

25 ENERGY STORAGE↗
DOE OSTI2023

Perspectives for self-driving labs in synthetic biology

Self-driving labs (SDLs) combine fully automated experiments and data collection with artificial intelligence (AI) and control algorithms that decide not only the set of parameters for the next experiment, but also potentially which scientific hypotheses to test. Taken to their ultimate expression, SDLs could usher a new paradigm of scientific research, where the world is probed, interpreted, and explained by machines for human benefit. Whereas there are functioning SDLs in the fields of chemistry and materials science, we contend that synthetic biology provides a unique opportunity since the genome provides a single, easily accessible, target for affecting the incredibly wide repertoire of biological cell behavior. Since they can provide large amounts of high-quality data, SDLs can be a platform for AI to develop approaches to systematically convert data into scientific knowledge systems. These knowledge systems can be used both to understand the biological world and to design bioengineered systems to fit a desired specification (inverse design). However, the level of investment required for the creation of biological SDLs is only warranted if directed towards solving difficult and enabling biological questions. Here, we discuss challenges and opportunities in creating SDLs for synthetic biology.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2025

Design and structural basis of selective 1,4-dihydropyridine inhibitors of the calcium-activated potassium channel K Ca 3.1

The 1,4-dihydropyridines, drugs with well-established bioavailability and toxicity profiles, have proven efficacy in treating human hypertension, peripheral vascular disorders, and coronary artery disease. Every 1,4-dihydropyridine in clinical use blocks L-type voltage-gated calcium channels. We now report our development, using selective optimization of a side activity (SOSA), of a class of 1,4-dihydropyridines that selectively and potently inhibit the intermediate-conductance calcium-activated K + channel K Ca 3.1, a validated therapeutic target for diseases affecting many organ systems. One of these 1,4-dihydropyridines, DHP-103, blocked K Ca 3.1 with an IC 50 of 6 nM and exhibited exquisite selectivity over calcium channels and a panel of >100 additional molecular targets. Using high-resolution structure determination by cryogenic electron microscopy together with mutagenesis and electrophysiology, we delineated the drug binding pocket for DHP-103 within the water-filled central cavity of the K Ca 3.1 channel pore, where bound drug directly impedes ion permeation. DHP-103 inhibited gain-of-function mutant K Ca 3.1 channels that cause hereditary xerocytosis, suggesting its potential use as a therapeutic for this hemolytic anemia. In a rat model of acute ischemic stroke, the second leading cause of death worldwide, DHP-103 administered 12 h postischemic insult in proof-of-concept studies reduced infarct volume, improved balance beam performance (measure of proprioception) and decreased numbers of activated microglia in infarcted areas. K Ca 3.1-selective 1,4-dihydropyridines hold promise for the many diseases for which K Ca 3.1 has been experimentally confirmed as a therapeutic target.

Ong, Seow Theng [Lee Kong Chian School of Medicine↗
DOE OSTI2023

Genomic and Phenotypic Characterization of Shiga Toxin-Producing Escherichia albertii Strains Isolated from Wild Birds in a Major Agricultural Region in California

Escherichia albertii is an emerging foodborne pathogen. To better understand the pathogenesis and health risk of this pathogen, comparative genomics and phenotypic characterization were applied to assess the pathogenicity potential of E. albertii strains isolated from wild birds in a major agricultural region in California. Shiga toxin genes stx2f were present in all avian strains. Pangenome analyses of 20 complete genomes revealed a total of 11,249 genes, of which nearly 80% were accessory genes. Both core gene-based phylogenetic and accessory gene-based relatedness analyses consistently grouped the three stx2f-positive clinical strains with the five avian strains carrying ST7971. Among the three Stx2f-converting prophage integration sites identified, ssrA was the most common one. Besides the locus of enterocyte effacement and type three secretion system, the high pathogenicity island, OI-122, and type six secretion systems were identified. Substantial strain variation in virulence gene repertoire, Shiga toxin production, and cytotoxicity were revealed. Six avian strains exhibited significantly higher cytotoxicity than that of stx2f-positive E. coli, and three of them exhibited a comparable level of cytotoxicity with that of enterohemorrhagic E. coli outbreak strains, suggesting that wild birds could serve as a reservoir of E. albertii strains with great potential to cause severe diseases in humans.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2023

Identifying strengths and weaknesses of methods for computational network inference from single-cell RNA-seq data

Single-cell RNA-sequencing (scRNA-seq) offers unparalleled insight into the transcriptional programs of different cellular states by measuring the transcriptome of thousands of individual cells. An emerging problem in the analysis of scRNA-seq is the inference of transcriptional gene regulatory networks and a number of methods with different learning frameworks have been developed to address this problem. Here, we present an expanded benchmarking study of eleven recent network inference methods on seven published scRNA-seq datasets in human, mouse, and yeast considering different types of gold standard networks and evaluation metrics. We evaluate methods based on their computing requirements as well as on their ability to recover the network structure. We find that, while most methods have a modest recovery of experimentally derived interactions based on global metrics such as Area Under the Precision Recall curve, methods are able to capture targets of regulators that are relevant to the system under study. Among the top performing methods that use only expression were SCENIC, PIDC, MERLIN or Correlation. Addition of prior biological knowledge and the estimation of transcription factor activities resulted in the best overall performance with the Inferelator and MERLIN methods that use prior knowledge outperforming methods that use expression alone. We found that imputation for network inference did not improve network inference accuracy and could be detrimental. Comparisons of inferred networks for comparable bulk conditions showed that the networks inferred from scRNA-seq datasets are often better or at par with the networks inferred from bulk datasets. Our analysis should be beneficial in selecting methods for network inference. At the same time, this highlights the need for improved methods and better gold standards for regulatory network inference from scRNAseq datasets.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2022

Strym: A Python Package for Real-time CAN Data Logging, Analysis and Visualization to Work with USB-CAN Interface

In this report, we describe a data analysis tool developed for decoding and analyzing vehicle data obtained from a passenger vehicle’s onboard controller area network (CAN) bus. The tool developed in this paper provides a timeseries framework to perform domain-specific analysis at scale when interpreting data from a vehicle or a collection of vehicles in light of how to design intelligent vehicle applications. The tool, called Strym, exploits the CAN bus mechanism of modern vehicles to capture data using commercially available CAN-to-USB hardware Comma.ai Panda devices, managed through open-source software Libpanda. Strym permits the decoding of vendor-specific CAN messages in a vehicle-agnostic manner. Through this, a researcher can characterize data throughput, assess data quality, and perform analyses. Such analyses are useful in a number of research such as studying human driving behavior in mixed-autonomy, new driver models, rare-event detection, traffic flow estimation, and custom control of vehicles.

Performance evaluation, Smart cities, Intelligent ↗
DOE OSTI2026

Dataset 1: A National and City Dataset on Human Factors in Pooled Rideshare, 2021

Dataset 1: A National and City Dataset on Human Factors in Pooled Rideshare, 2021. Dataset Description: Pooled Rideshare Acceptance Survey - Phase 1 (2021, N = 5,385). This dataset captures responses from a nationally representative sample of 5,385 adults across the United States to understand public acceptance, preferences, and behavioral intentions related to pooled rideshare (PR) services. The primary objective of this research is to provide actionable insights to inform the design, deployment, and policy development of sustainable shared mobility systems. Data was collected via an online survey administered through a national panel provider. Participants ranged in age from 18 to 95 years, and representation from all U.S. regions. The survey instrument was designed to explore numerous dimensions related to PR adoption including demographic traits, current travel habits, rideshare familiarity, trust, safety, environmental attitudes, and user experience preferences. Both rideshare users and non-users were included, offering a diverse range of perspectives. - Phase_1_Final - The dataset includes survey items developed from literature reviews, and prior field studies. Each row represents an individual respondent, and each column corresponds to a variable such as willingness to use pooled rideshare, attitudes toward specific service features, and sociodemographic data. The data is available in both .CSV and .SAV formats. - Phase_1_Final_MapFile - The accompanying data dictionary explains all variable labels, response scales, and codes. An .XLSX format of the full survey instrument is also included to support interpretation and reuse of the dataset.

32 ENERGY CONSERVATION, CONSUMPTION, AND UTILIZATI↗
DOE OSTI2021

Uranium Immobility in Tims Branch Wetland

The objective of this study was to address an item identified by the Low-Level Waste Disposal Facility Federal Review Group (LFRG) panel during their review of the Savannah River Site’s Composite Analysis. Their concern was that the Tims Branch wetland, which has elevated levels of uranium (U) originating from site operations between 1952 to 1985, may be a secondary source term, posing a human health risk. This report briefly describes three studies dealing with: 1) quantifying the mass of U remaining in the wetland, 2) quantifying the tendency of U to release from Tims Branch sediment, and 3) describing the distribution of U in aqueous and suspended solids in Tims Branch water during episodic storm events. The Tims Branch wetland has been extremely effective for the last 50 years at immobilizing U released to the system. A detailed map including 270,000 gamma spectra of the U distribution in the wetland indicated that 84% of the initial 43,500 kg U introduced in the system remain there after 50 years (Kaplan et al., 2020). The effectiveness of immobilizing U is supported by stream water measurements collected over the last several decades indicating that U concentrations have been consistently below drinking water regulatory limits (i.e., the EPA Maximum Contaminant Level, 30 pg/L (SRNS, 2019)). Furthermore, using contaminated Tims Branch sediments, in situ desorption Kd values (ratio of U sediment/U Water) were extremely high, ranging from 104to 106 L/kg, suggesting the U is strongly bound to these wetland sediments. Finally, a detailed study of Tims Branch stream water properties during episodic rain events indicated that essentially all the U transported in this stream was associated with suspended solids (Batson et al., 1996). Together these findings indicate that the Tims Branch wetland is extremely effective in its present state at immobilizing U and that the small masses of U released downstream will be predominantly in association with suspended solids.

12 MANAGEMENT OF RADIOACTIVE AND NON-RADIOACTIVE W↗
DOE OSTI2025

Reassessment of Dose Contributions from the Paducah Cask Special Waste Form Buried in the E-Area Low-Level Waste Facility

During a recent revision to the groundwater and inadvertent human intruder screening analysis report (Aleman and Hamm, 2023), weaknesses within the screening logic were observed resulting in the addition of U-235 being brought back into the list of radionuclides requiring inventory limits within the Paducah Cask special waste form (SWF). In addition, while reviewing the earlier vadose zone transport analysis efforts, an inconsistency was observed in the initial U-235P inventory that was supplied to the Consolidated Waste Tracking System (CWTS) back in 2009.

12 MANAGEMENT OF RADIOACTIVE AND NON-RADIOACTIVE W↗