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At least 1,441 records · Page 80

maranasgroup/k-sacce306

The parameterization of kinetic models requires measurement of fluxes and/or metabolite levels for a base strain and a few genetic perturbations thereof. Unlike stoichiometric models that are mostly invariant to the specific strain, it remains unclear whether kinetic models constructed for different strains of the same species have similar or significantly different kinetic parameters. This important question underpins the applicability range and prediction limits of kinetic reconstructions. To this end, herein we parameterize two separate large-scale kinetic models using K-FIT with genome-wide coverage corresponding to two distinct strains of Saccharomyces cerevisiae: CEN.PK 113-7D strain (model k-sacce306-CENPK), and growth-deficient BY4741 (isogenic to S288c; model k-sacce306-BY4741). The metabolic network for each model contains 306 reactions, 230 metabolites, and 119 substrate-level regulatory interactions. The two models (for CEN.PK and BY4741) recapitulate, within one standard deviation, 77% and 75% of the fitted dataset fluxes, respectively, determined by 13C metabolic flux analysis for wild-type and eight single-gene knockout mutants of each strain. Strain-specific kinetic parameterization results indicate that key enzymes in the TCA cycle, glycolysis, and arginine and proline metabolism drive the metabolic differences between these two strains of S. cerevisiae. Our results suggest that although kinetic models cannot be readily used across strains as stoichiometric models, they can capture species-specific information through the kinetic parameterization process.

Dinh, Hoang↗

Toward a more realistic representation of surface albedo in NASA CERES-derived surface radiative fluxes

Accurate multidecadal radiative flux records are vital to understand Arctic amplification and constrain climate model uncertainties. Uncertainty in the NASA Clouds and the Earth’s Radiant Energy System (CERES)-derived irradiances is larger over sea ice than any other surface type and comes from several sources. The year-long Multidisciplinary drifting Observatory for the Study of Arctic Climate (MOSAiC) expedition in the central Arctic provides a rare opportunity to explore uncertainty in CERES-derived radiative fluxes. First, a systematic and statistically robust assessment of surface shortwave and longwave fluxes was conducted using in situ measurements from MOSAiC flux stations. The CERES Synoptic 1degree (SYN1deg) product overestimates the downwelling shortwave flux by +11.40 Wm –2 and underestimates the upwelling shortwave flux by –15.70 Wm –2 and downwelling longwave fluxes by –12.58 Wm –2 at the surface during summer. In addition, large differences are found in the upwelling longwave flux when the surface approaches the melting point (approximately 0°C). The biases in downwelling shortwave and longwave fluxes suggest that the atmosphere represented in CERES is too optically thin. The large negative bias in upwelling shortwave flux can be attributed in large part to lower surface albedo (–0.15) in satellite footprint relative to surface sensors. Additionally, the results show that the spectral surface albedo used in SYN1deg overestimates albedo in visible and mid-infrared bands. A series of radiative transfer model perturbation experiments are performed to quantify the factors contributing to the differences. The CERES-MOSAiC broadband albedo differences (approximately 20 Wm –2 ) explain a larger portion of the upwelling shortwave flux difference than the spectral albedo shape differences (approximately 3 Wm –2 ). In addition, the differences between perturbation experiments using hourly and monthly MOSAiC surface albedo suggest that approximately 25% of the sea ice surface albedo variability is explained by factors not correlated with daily sea ice concentration variability. Biases in net shortwave and longwave flux can be reduced to less than half by adjusting both albedo and cloud inputs toward observed values. The results indicate that improvements in the surface albedo and cloud data would substantially reduce the uncertainty in the Arctic surface radiation budget derived from CERES data products.

54 ENVIRONMENTAL SCIENCES↗

AmeriFlux US-Me7 Metolius Low Burn Severity Subcanopy

This is the AmeriFlux version of the carbon flux data for the site US-Me7 Metolius Low Burn Severity Subcanopy. Site Description - This is a sub-canopy flux site measuring a low burn severity segment of the 2020 green ridge fire. Intact ponderso pine canopy with a mean stand age of 73 years old as of 2022. Understory largely absent.

Hanson, Chad↗

AmeriFlux FLUXNET-1F US-Me7 Metolius Low Burn Severity Subcanopy

This is the AmeriFlux Management Project (AMP) created FLUXNET-1F version of the carbon flux data for the site US-Me7 Metolius Low Burn Severity Subcanopy. This is the FLUXNET version of the carbon flux data for the site US-Me7 Metolius Low Burn Severity Subcanopy produced by applying the standard ONEFlux (1F) software. Site Description - This is a sub-canopy flux site measuring a low burn severity segment of the 2020 green ridge fire. Intact ponderso pine canopy with a mean stand age of 73 years old as of 2022. Understory largely absent.

Hanson, Chad [Oregon State University]↗

Detectors and beam monitors based on wide bandgap semiconductors at cryogenic temperatures

Wide-bandgap semiconductors, such as single-crystal diamond and sapphire, can be used to measure the flux of passing particles through a particle-induced conductivity effect. We recently demonstrated a diamond-based, electrodeless electron beam halo monitor. This monitor utilized a thin diamond blade placed within an open, high-quality microwave resonator. The blade partially intercepted the beam and changes in the RF properties of the resonator were used to infer beam parameters. To enhance the sensitivity of our semiconductor sensors, we propose two new techniques: (1) biasing the semiconductor sensor to support avalanche multiplication of free carriers, and (2) operating at cryogenic temperatures to reduce intrinsic semiconductor losses and increase the mobility of induced carriers. These techniques are applicable not only to particle beam diagnostics but also to the detection of various types of ionizing radiation.

Accelerator Physics↗

Control of the Plasma-Material Interface for Long Pulse Optimization in the Experimental Advanced Superconducting Tokamak (EAST) (Final Report)

This project involved a collaborative effort, led by Dr. Rajesh Maingi of Princeton Plasma Physics Laboratory, to understand and control the plasma-material interface to improve long pulse discharge control and performance in the EAST devices. The focus is on long pulse recycling control and optimization, which can be challenging because of their broad range of materials used for plasma-facing components (PFC) and wall conditioning techniques. The purpose of the EAST device is to demonstrate long-pulse, stable, high performance plasma operation, providing a test-bed for key physics and technology issues for next step devices. As part of these tests, EAST has deployed carbon for the lower divertor PFC, tungsten for the upper divertor, and molybdenum for the main wall. In addition wall coatings are deployed for long pulse recycling control: lithium (Li) via several delivery tools, boronization, and recently also siliconization; for example, in 2013, a layer of SiC was deposited on all of the graphite tiles. Oxygen is also present at trace levels, making for a complex mix of materials and plasma-materials interactions (PMI). This mix of materials and the limited durability of wall coatings, coupled to partially optimized cryo-pumping, lead to evolution of the recycling off the PFCs, which restricts the duration of stationary, high performance, long pulse discharges. Comparing the wall conditioning techniques, Li enables the highest energy confinement and lowest recycling for the longest duration, while also suppressing ELMs in certain discharges. More specifically, research activities at the University of Tennessee focused on heat flux profile measurements in EAST, modeling the surface response, including the bonding energetics and chemical interactions between Li with carbon, tungsten, hydrogen and impurities, in addition to post situ experimental characterization and analysis of the divertor plasma facing components in EAST. This final report describes the overall progress within each of these tasks at the University of Tennessee within the project.

36 MATERIALS SCIENCE↗

Biological Carbon Sequestration for Climate and Soil Health

The United States recently launched the Net Zero World Initiative on decarbonization. As temperatures and sea levels rise, strong action is needed to mitigate high atmospheric CO 2 levels. In response to this need, a joint workshop between the US Department of Energy’s Oak Ridge National Laboratory (ORNL) and Lawrence Berkeley National Laboratory (LBNL) was convened to assess the challenges and opportunities within biological carbon (C) capture. The virtual workshop on Biological Carbon Sequestration for Climate and Soil Health focused on three aspects of biological C capture research: natural systems, engineered systems, and modeling. For this workshop, the scope of natural systems included unmanaged (e.g., grasslands, wetlands, natural forests) and managed (e.g., agricultural lands, commercial forests, forest biofuels) ecosystems. The engineered systems group covered topics in genetically modified plants and microbes, synthetic microbiomes, and altered plant–microbe interactions for enhancing C capture, storage, and utilization. The modeling group focused on computational tools and data collection to predict and assess the effectiveness of new biocarbon sequestration advances. Participant expertise included plant and microbial systems biology, synthetic biology, soil biogeochemistry, and techno-economic analysis. Together, participants outlined key scientific advances in support of biological C capture and storage. Among the major findings of the meeting were the need to better measure C flux within natural, agricultural, and fabricated ecosystems for experimentation; better understand the role of soil composition, plant roots, and the rhizosphere (i.e., the soil surrounding the plant root) in the underground storage of organic C; and design plant–microbe systems for maximal C storage.

54 ENVIRONMENTAL SCIENCES↗

First Results from Diamagnetic Loop Measurements of the DARHT-I Electron Beam [Slides]

Diamagnetic-loop (DML) measurements can inform efforts to improve radiographic resolution. DML is non-invasive, so time-resolved data is available on every shot while tuning or executing a hydrotest. The time-resolved beam size can be deduced from the DML data. LIA beam-transport dynamics affecting beam size can be monitored while testing mitigation measures (e.g., beam halo suppression). Time-resolved beam size at final focus provides immediate information about spot size enlargement due to blur, and effectiveness of mitigation efforts. DML measures magnetic flux produced by a rotating beam, so it also enables monitoring of Larmor emittance that can enlarge the spot size. Beam rotation adds in quadrature with emittance, hence “Larmor emittance." Observing zero bias-field DML flux monitors beam rotation resulting from imperfect nulling of flux linking the cathode, and/or broken LIA transport symmetry (e.g., steering, quads, etc.).

43 PARTICLE ACCELERATORS↗

Sensitivity to Cabibbo-Suppressed $\Lambda$ Production in MicroBooNE

We present a procedure to measure a flux averaged, restricted phase space cross section for direct (Cabibbo suppressed) Λ production using the MicroBooNE detector. This is a rare process, exclusively occurring in anti-neutrino interactions and to maximise the sensitivity of this analysis we combine predictions using the NuMI flux from two data taking periods, one in which this beam was run in neutrino mode and one in anti-neutrino mode. The event selection for this analysis was previously described in MicroBooNE public note 1097. The calculation of systematic uncertainties is shown and a method to propagate them through to the final cross section calculation is described, with final sensitivities shown in the form of Bayesian posterior distributions on the extracted cross section.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Precision Neutrino Oscillation Physics with the Daya Bay and DUNE Experiments

The team supported by this grant made significant contributions to the final results of the Daya Bay Reactor Antineutrino Experiment. This experiment utilized eight identically designed antineutrino detectors positioned at varying distances from six 2.9 GW th nuclear reactors to precisely measure the oscillation parameters that govern antineutrino disappearance at short (<2 km) baselines. Our group played a leading role in the calibration and data quality efforts, both of which have been crucial for all final results. Additionally, we co-led the development of an independent measurement of the neutrino mixing angle θ 13 and the atmospheric mass splitting using a sample of antineutrinos identified via neutron capture on hydrogen. Lastly, we laid the groundwork for a search for seasonal modulation in Daya Bay’s measured muon flux using the final dataset, a result expected to be published soon. Simultaneously, our team ramped up its participation in the Deep Underground Neutrino Experiment (DUNE). This experiment will employ a powerful neutrino beam from Fermilab in Illinois directed to the Homestake mine in South Dakota to address some of the most pressing questions in neutrino physics, including the ordering of neutrino masses and whether neutrinos violate the CP symmetry. Our work focused on the development of the pixelated and modularized Liquid Argon Time-Projection Chamber technology that is being prepared for DUNE’s Near Detector. Our group took responsibility for the development, testing, and maintenance of the firmware for the control boards of the detector’s charge readout system and played an active role in analyzing data produced by the very first fully integrated prototypes.

2x2 Demonstrator↗

Discriminator Threshold Study for Scint 1

During electronics testing at NSRL, the fluence/spill is recorded from the QC1 chamber. This chamber, which is a permanent fixture on the NSRL beamline, requires calibration from an external radiation detector that can measure ion flux directly. A 1.0 × 1.0 × 0.5 cm 3 scintillator is used at the testing location to calibrate all NSRL beams for electronic experiments. A calibration factor is derived by comparing the ions observed by the scintillator and QC1 during an exposure of at least 10 5 scintillator counts or total ions.

43 PARTICLE ACCELERATORS↗

Modeling Assessment of Tidal Energy Extraction in the Western Passage

Numerical models have been widely used for the resource characterization and assessment of tidal instream energy. The accurate assessment of tidal stream energy resources at a feasibility or project-design scale requires detailed hydrodynamic model simulations or high-quality field measurements. This study applied a three-dimensional finite-volume community ocean model (FVCOM) to simulate the tidal hydrodynamics in the Passamaquoddy–Cobscook Bay archipelago, with a focus on the Western Passage, to assist tidal energy resource assessment. IEC Technical specifications were considered in the model configurations and simulations. The model was calibrated and validated with field measurements. Energy fluxes and power densities along selected cross sections were calculated to evaluate the feasibility of the tidal energy development at several hotspots that feature strong currents. When taking both the high current speed and water depth into account, the model results showed that the Western Passage has great potential for the deployment of tidal energy farms. The maximum extractable power in the Western Passage was estimated using the Garrett and Cummins method. Different criteria and methods recommended by the IEC for resource characterization were evaluated and discussed using a sensitivity analysis of energy extraction for a hypothetical tidal turbine farm in the Western Passage.

16 TIDAL AND WAVE POWER↗

Estimating the Ultraviolet Emission of M Dwarfs with Exoplanets from Ca ii and Hα

M dwarf stars are excellent candidates around which to search for exoplanets, including temperate, Earth-sized planets. To evaluate the photochemistry of the planetary atmosphere, it is essential to characterize the UV spectral energy distribution of the planet’s host star. This wavelength regime is important because molecules in the planetary atmosphere such as oxygen and ozone have highly wavelength-dependent absorption cross sections that peak in the UV (900–3200 Å). We seek to provide a broadly applicable method of estimating the UV emission of an M dwarf, without direct UV data, by identifying a relationship between noncontemporaneous optical and UV observations. Our work uses the largest sample of M dwarf star far- and near-UV observations yet assembled. We evaluate three commonly observed optical chromospheric activity indices—Hα equivalent widths and log{sub 10} L Hα /L bol , and the Mount Wilson Ca ii H&K S and R HK ' indices—using optical spectra from the HARPS, UVES, and HIRES archives and new HIRES spectra. Archival and new Hubble Space Telescope COS and STIS spectra are used to measure line fluxes for the brightest chromospheric and transition region emission lines between 1200 and 2800 Å. Our results show a correlation between UV emission-line luminosity normalized to the stellar bolometric luminosity and Ca ii R HK ' with standard deviations of 0.31–0.61 dex (factors of ~2–4) about the best-fit lines. We also find correlations between normalized UV line luminosity and Hα log 10 L Hα /L bol and the S index. These relationships allow one to estimate the average UV emission from M0 to M9 dwarfs when UV data are not available.

79 ASTRONOMY AND ASTROPHYSICS↗

DESI Spectroscopy of HETDEX Emission-line Candidates. I. Line Discrimination Validation

The Hobby–Eberly Dark Energy Experiment (HETDEX) is an untargeted spectroscopic galaxy survey that uses Lyα-emitting galaxies (LAEs) as tracers of 1.9 < z < 3.5 large-scale structure. Most detections consist of a single emission line, whose identity is inferred via a Bayesian analysis of ancillary data. To determine the accuracy of these line identifications, HETDEX detections were observed with the Dark Energy Spectroscopic Instrument (DESI). In two DESI pointings, high-confidence spectroscopic redshifts are obtained for 1157 sources, including 982 LAEs. The DESI spectra are used to evaluate the accuracy of the HETDEX object classifications and tune the methodology to achieve the HETDEX science requirement of ≲2% contamination of the LAE sample by low-redshift emission-line galaxies, while still assigning 96% of the true Lyα emission sample with the correct spectroscopic redshift. We compare emission-line measurements between the two experiments assuming a simple Gaussian line fitting model. Fitted values for the central wavelength of the emission line, the measured line flux, and line widths are consistent between the surveys within uncertainties. Derived spectroscopic redshifts, from the two classification pipelines, when both agree as an LAE classification, are consistent to within $\langle$Δz/(1 + z)$\rangle$ = 6.9 × 10 −5 with an rms scatter of 3.3 × 10 −4 . Data are available at https://data.desi.lbl.gov/desi/public/dr1/vac/dr1/hetdex.

79 ASTRONOMY AND ASTROPHYSICS↗

Development of a plant carbon–nitrogen interface coupling framework in a coupled biophysical-ecosystem–biogeochemical model (SSiB5/TRIFFID/DayCent-SOM v1.0)

Plant and microbial nitrogen (N) dynamics and N availability regulate the photosynthetic capacity and capture, allocation, and turnover of carbon (C) in terrestrial ecosystems. Studies have shown that a wide divergence in representations of N dynamics in land surface models leads to large uncertainties in the biogeochemical cycle of terrestrial ecosystems and then in climate simulations as well as the projections of future trajectories. In this study, a plant C–N interface coupling framework is developed and implemented in a coupled biophysical-ecosystem–biogeochemical model (SSiB5/TRIFFID/DayCent-SOM v1.0). The main concept and structure of this plant C–N framework and its coupling strategy are presented in this study. This framework takes more plant N-related processes into account. The dynamic ratio (CNR) for each plant functional type (PFT) is introduced to consider plant resistance and adaptation to N availability to better evaluate the plant response to N limitation. Furthermore, when available N is less than plant N demand, plant growth is restricted by a lower maximum carboxylation capacity of RuBisCO (V c,max ), reducing gross primary productivity (GPP). In addition, a module for plant respiration rates is introduced by adjusting the respiration with different rates for different plant components at the same N concentration. Since insufficient N can potentially give rise to lags in plant phenology, the phenological scheme is also adjusted in response to N availability. All these considerations ensure a more comprehensive incorporation of N regulations to plant growth and C cycling. This new approach has been tested systematically to assess the effects of this coupling framework and N limitation on the terrestrial carbon cycle. Long-term measurements from flux tower sites with different PFTs and global satellite-derived products are employed as references to assess these effects. The results show a general improvement with the new plant C–N coupling framework, with more consistent emergent properties, such as GPP and leaf area index (LAI), compared to the observations. The main improvements occur in tropical Africa and boreal regions, accompanied by a decrease in the bias in global GPP and LAI by 16.3 % and 27.1 %, respectively.

54 ENVIRONMENTAL SCIENCES↗

Time-Dependent Structure of the Upper Atmosphere

The physical properties of the upper atmosphere are determined mainly by heat conduction, the heat sources and the barometric law. An analysis of the integro-differential equation which describes these physical processes has been carried out. It is found that heating of the thermosphere due to absorption of the solar extreme ultraviolet (EUV) radiation alone cannot explain the observed diurnal variation of density and temperature, since it would yield a maximum of these properties at about 17h local time, instead of 14h where it is observed. Secondly, if the EUV flux is adjusted to give the observed average temperature, then the diurnal variation in density would be much too large compared with the observed amplitude. Thirdly, it would require an extremely high efficiency for the conversion of EUV radiation into heat, if we compare the required flux with Hinteregger's measurements of the EUV flux. Thus, it is necessary to have another heat source in addition to the heating due to absorption of EUV radiation. If an additional beat source is used, which has a maximum at about 9h local time and a flux of 1 erg cm−1 sec−1, a time-dependent model of the upper atmosphere is obtained that is in good agreement with the observed densities. There is evidence that this additional heat source derives its energy ultimately from the solar corpuscular radiation. In this paper we present the results of calculations for a model in the equatorial and temperature zones of the earth, for those times when the average solar activity corresponds to a solar radiation flux of 200×110−22 Wm−2 (cps)−1 at 10.7-cm wavelength. The physical properties (temperature, density, pressure, scale height, mean molecular weight and the number densities of N2, O2, O, He and H) are given as a function of local time and for the altitudes between 120 km and 2050 km.

ATMOSPHERE↗