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DOE OSTI2022

$\mathrm{SIM}$-$\mathrm{STEM}$ $\mathrm{Lab}$: Incorporating Compressed Sensing Theory for Fast STEM Simulation

We report recently it has been shown that precise dose control and an increase in the overall acquisition speed of atomic resolution scanning transmission electron microscope (STEM) images can be achieved by acquiring only a small fraction of the pixels in the image experimentally and then reconstructing the full image using an inpainting algorithm. In this paper, we apply the same inpainting approach (a form of compressed sensing) to simulated, sub-sampled atomic resolution STEM images. We find that it is possible to significantly sub-sample the area that is simulated, the number of g-vectors contributing the image, and the number of frozen phonon configurations contributing to the final image while still producing an acceptable fit to a fully sampled simulation. Here we discuss the parameters that we use and how the resulting simulations can be quantifiably compared to the full simulations. As with any Compressed Sensing methodology, care must be taken to ensure that isolated events are not excluded from the process, but the observed increase in simulation speed provides significant opportunities for real time simulations, image classification and analytics to be performed as a supplement to experiments on a microscope to be developed in the future

47 OTHER INSTRUMENTATION↗

DOE OSTI2021

Properties of giant dipole resonances within an extended pairing model with a focus on spectral statistics

In this paper, we report on a study of the spectral features associated with dipole resonances in medium mass nuclei (E ≤ 12 MeV), as revealed in the framework of the spd-interacting boson model. The effect of pairing correlations on the theory follows from solutions obtained through an application of the Bethe Ansatz Equation. In general, calculated spectra around the critical point of the vibrational to γ-soft transitions appears to approach that of a Gaussian Orthogonal Ensemble, while near the rotational and vibrational limits of the theory the spectra show more regular behavior. Specifically, the results reveal that the statistical features of the spectra are sensitive to the vector boson pairing strength, c p , in the transition region; that is, when c p is zero, or when the system approaches one of its dynamical symmetries limits the spectrum display regular features, while for stronger c p values, or when near to the critical phase transition region, the spectral feature show more chaotic behavior. Overall, our results indicate that the statistical features are governed by the interplay between dipole resonant energies, pairing correlations, and interactions between and among the single and vector bosons modes of the theory. As part of this work we also found out that chaoticity occurs when results were fit to a Berry-Robnik distribution. Throughout our analyses, we used experimentally known information about both positive and negative parity states. Our findings suggest that dipole resonances appear to be best-described by Poisson statistics for A ≈ 32-138 nuclei.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

NASA NTRS1994

East-west inclination of large-scale photospheric magnetic fields

Sixteen years of Wilcox Solar Observatory (WSO) magnetogram data have been studied to determine the solar cycle variation and latitude dependence of the east-west inclination of photospheric magnetic field lines. East-west inclination is here defined as the angle between a field line and its local radial vector, as projected onto the plane of the latitude and line of sight. Inclination is determined by a least-squares fit of observed magnetic fields to a simple projection model, and is found to depend on polarity and to change with the solar cycle. Leading and following polarities are tipped towards each by about 9 deg and have an overall net tilt in the direction of rotation (to the west) of 0.6 deg. New cycles are seen to begin at high latitudes and to grow through the lower latitudes over approximately 5 years, providing evidence for an extended cycle length of 16-18 years.

Shrauner, J. A↗

DOE OSTI2026

QCD+QED PDF implications for the Higgs sector

In this work, we examine the implications of electroweak corrections beyond leading order for processes of special interest in the Higgs sector. We especially explore the role of these corrections given the introduction of an explicit parton distribution function (PDF) for the photon in the proton, an object which emerges necessarily in global PDF fits which include QED effects (i.e., ‘QCD+QED PDFs’). We concentrate on several representative cases, including total Higgs-production cross sections through gluon fusion, gg → H, vector-boson fusion (VBFH), and associated production, pp → V H; we also examine differential distributions, taking a representative Higgs-strahlung process, pp → W + H. We find that the recently developed LUX formalism for the photon PDF significantly stabilizes the PDF dependence of both QED-PDF and electroweak corrections in the Higgs sector, while leaving overall ~ 3–4% cross-section-level variations, depending on the chosen QCD+QED PDF. We illustrate this QCD+QED PDF dependence by exploring predictions based upon recent analyses of the CTEQ-TEA, MSHT, and NNPDF analysis groups, fitted either at NNLO or approximate N3LO in QCD.

Higgs production↗

DOE OSTI2020

Systematic Assessment of Retrieval Methods for Canopy Far-Red Solar-Induced Chlorophyll Fluorescence Using High-Frequency Automated Field Spectroscopy

Remote sensing of solar-induced chlorophyll fluorescence (SIF) offers potential to infer photosynthesis across scales and biomes. Many retrieval methods have been developed to estimate top-of-canopy SIF using ground-based spectroscopy. However, inconsistencies among methods may confound interpretation of SIF dynamics, eco-physiological/environmental drivers, and its relationship with photosynthesis. Using high temporal- and spectral resolution ground-based spectroscopy, we aimed to (1) evaluate performance of SIF retrieval methods under diverse sky conditions using continuous field measurements; (2) assess method sensitivity to fluctuating light, reflectance, and fluorescence emission spectra; and (3) inform users for optimal ground-based SIF retrieval. Analysis included field measurements from bi-hemispherical and hemispherical-conical systems and synthetic upwelling radiance constructed from measured downwelling radiance, simulated reflectance, and simulated fluorescence for benchmarking. Fraunhofer-based differential optical absorption spectroscopy (DOAS) and singular vector decomposition (SVD) retrievals exhibit convergent SIF-PAR relationships and diurnal consistency across different sky conditions, while O2A-based spectral fitting method (SFM), SVD, and modified Fraunhofer line discrimination (3FLD) exhibit divergent SIF-PAR relationships across sky conditions. We find that such behavior holds across system configurations, though hemispherical-conical systems diverge less across sky conditions. O 2 A retrieval accuracy, influenced by atmospheric distortion, improves with a narrower fitting window and when training SVD with temporally local spectra. This may impact SIF-photosynthesis relationships interpreted by previous studies using O 2 A-based retrievals with standard (759–767.76 nm) fitting windows. Fraunhofer-based retrievals resist atmospheric impacts but are noisier and more sensitive to assumed SIF spectral shape than O 2 A-based retrievals. We recommend SVD or SFM using reduced fitting window (759.5–761.5 nm) for robust far-red SIF retrievals across sky conditions.

59 BASIC BIOLOGICAL SCIENCES↗

DOE OSTI2021

Dark energy survey internal consistency tests of the joint cosmological probes analysis with posterior predictive distributions

Beyond ΛCDM, physics or systematic errors may cause subsets of a cosmological data set to appear inconsistent when analysed assuming ΛCDM. Here, we present an application of internal consistency tests to measurements from the Dark Energy Survey Year 1 (DES Y1) joint probes analysis. Our analysis relies on computing the posterior predictive distribution (PPD) for these data under the assumption of ΛCDM. We find that the DES Y1 data have an acceptable goodness of fit to ΛCDM, with a probability of finding a worse fit by random chance of p = 0.046. Using numerical PPD tests, supplemented by graphical checks, we show that most of the data vector appears completely consistent with expectations, although we observe a small tension between large- and small-scale measurements. A small part (roughly 1.5 per cent) of the data vector shows an unusually large departure from expectations; excluding this part of the data has negligible impact on cosmological constraints, but does significantly improve the p-value to 0.10. The methodology developed here will be applied to test the consistency of DES Year 3 joint probes data sets.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

NASA NTRS1982

NOSS-SCAT wind direction alias removal

The use of automated algorithms for removing aliases in NOSS-SCAT data is reported. The algorithms used for alias removal consist of histogram analysis, local averaging and curve fitting. The histogram analysis is used to determine the degree of homogeneity of the wind field defined by the largest probability alias vector at each grid point. The alias directions are compared with the preferred direction at each grid location and one of the multiple aliases is chosen as the true direction.

Shanmugan, K. S.↗

NASA NTRS1982

Determination of intercontinental baselines and Earth orientation using VLBI

A series of experiments was conducted during the last decade to explore the capability of very long baseline interferometry (VLBI) to measure the crustal and rotational motions of the Earth with accuracies at the centimeter level. The observing stations are those of NASA's Deep Space Network in California, Spain and Australia. A multiparameter fit to the observed values of delay and delay rate yields radio source positions, polar motion, universal time, the precession constant, baseline vectors, and solid Earth tides. Source positions are obtained with formal errors of the order of 0''.01. UT1-UTC and polar motion are determined at 49 epochs, with formal error estimates for the more recent data of 0.5 msec for UT1-UTC and 2 to 6 mas for polar motion. Intercontinental baseline lengths are determined with formal errors of 5 to 10 cm. The Love numbers and Earth tide phase lag agree with the commonly accepted values.

Sovers, O. J.↗

NASA NTRS1988

Pseudo-scalar pi N coupling and relativistic proton-nucleus scattering

Relativistic p-Ca-40 elastic scattering observables are calculated using relativistic NN amplitudes obtained from the solution of a two-body relativistic equation in which one particle is kept on its mass-shell. Results at 200 MeV are presented for two sets of NN amplitudes, one with pure pseudo-vector coupling for the pion and another with a 25 percent admixture of pseudo-scaling coupling. Both give a very good fit to the positive energy on-shell NN data. Differences between the predictions of these two models (which are shown to be due only to the differences in their corresponding negative energy amplitudes) provide a measure of the uncertainty in contructing Dirac optical potentials from NN amplitudes.

Gross, Franz↗

NASA NTRS1990

A multiblock multigrid three-dimensional Euler equation solver

Current aerodynamic designs are often quite complex (geometrically). Flexible computational tools are needed for the analysis of a wide range of configurations with both internal and external flows. In the past, geometrically dissimilar configurations required different analysis codes with different grid topologies in each. The duplicity of codes can be avoided with the use of a general multiblock formulation which can handle any grid topology. Rather than hard wiring the grid topology into the program, it is instead dictated by input to the program. In this work, the compressible Euler equations, written in a body-fitted finite-volume formulation, are solved using a pseudo-time-marching approach. Two upwind methods (van Leer's flux-vector-splitting and Roe's flux-differencing) were investigated. Two types of explicit solvers (a two-step predictor-corrector and a modified multistage Runge-Kutta) were used with multigrid acceleration to enhance convergence. A multiblock strategy is used to allow greater geometric flexibility. A report on simple explicit upwind schemes for solving compressible flows is included.

Cannizzaro, Frank E.↗

DOE OSTI2025

Amplitude Analysis of ωπ0 Photoproduction at GlueX

spectrum of light mesons produced from a linearly polarized photon beam. The production and decays of a light meson resonance X such as γp → Xp′ →ωπ0p′ can be modeled with polarized vector-pseudoscalar ampli- tudes, which can describe the contribution of individual amplitudes to the total measured intensity. The status of mass-independent fits to the ωπ0 mass spectrum over a wide range of mass and momentum transfer−twill be presented, with an emphasis on interactions with the b1(1235) meson. We will also present in parallel an analysis of moments of the angular dis- tributions for the same process, as a means of verifying the stability of the amplitude-based results. These results will help to improve the broader knowledge of light meson states and how they are produced.

Scheuer, Kevin [College of William and Mary, Willi↗

NASA NTRS2002

The SIM astronmetric grid

The Space Interferometry Mission (SIM) is fundamentally a one-dimensional instrument with a 15-degree field-of-regard. Mission objectives require a global reference grid of thousands of well-understood stars with positions known to 4 microarcseconds which will be used to establish the instrument baseline vector during scientific observations. This accuracy will be achieved by frequently observing a set of stars throughout the mission and performing a global fit of the observations to determine position, proper motion and parallax for each star. Each star will be observed approximately 200 times with about 6.5 stars per single instrument field on the sky. We describe the nature of the reference grid, the candidate objects, and the results of simulations demonstrating grid performance, including estimates of the grid robustness when including effects such as instrument drift and possible contamination of the grid star sample by undetected binaries.

SIM grid astrometry Space Interferometry Mission S↗

DOE OSTI2022

High bias machine learning for antineutrino-based safeguards for small reactors

The statistical methods used for antineutrino detection will need to be improved to effectively monitor the inventory of next-generation nuclear reactors. In this sensitivity study, we evaluate machine learning models compared to previously used statistical approaches to identify diversion scenarios in a simulated Advanced Fast Reactor (AFR)-100. A chi-square goodness-of-fit technique, which individually compares the simulated antineutrino yields to the expected antineutrino yield, resulted in precise but low diversion detection probability. Various support vector machine (SVM) models were applied with diverse training datasets to evaluate the robustness of the method towards unexpected or “unseen” diversion scenarios. Furthermore, our results indicate that while the SVM models significantly improved the detection probability of near-field antineutrino-based safeguards, up to a probability of ~0.04, for the simulated small reactor, the detection system still needs improvements to reach the 0.2 detection limit established by the International Atomic Energy Agency.

98 NUCLEAR DISARMAMENT, SAFEGUARDS, AND PHYSICAL P↗

DOE OSTI2020

Iron(III)–Oxo Cluster Chemistry with Dimethylarsinate Ligands: Structures, Magnetic Properties, and Computational Studies

A program has been initiated to develop Fe III /oxo cluster chemistry with the ‘pseudo-carboxylate’ ligand dimethylarsinate (Me 2 AsO 2 - ) for comparison with the well investigated Fe III /oxo/carboxylate cluster area. The synthesis and characterization of three polynuclear Fe III complexes are reported, [Fe 12 O 4 (O 2 C t Bu) 8 (O 2 AsMe 2 ) 17 (H 2 O) 3 ]Cl 3 (1), Na 2 [Fe 12 Na 2 O 4 (O 2 AsMe 2 ) 20 (NO 3 ) 6 (Me 2 AsO 2 H) 2 (H 2 O) 4 ](NO 3 ) 6 (2) and [Fe 3 (O 2 AsMe 2 ) 6 (Me 2 AsO 2 H) 2 (hqn) 2 ](NO 3 ) (3), where hqn is 8-hydroxyquinoline. The Fe 12 core of 1 is a type never previously encountered in Fe III carboxylate chemistry, consisting of two Fe 6 units each of which comprises two {Fe 3 (μ 3 -O 2- )} units bridged by three Me 2 AsO 2 - groups and linked into an Fe 12 loop structure by two anti-anti η 1 :η 1 :μ Me 2 AsO 2 - groups, a bridging mode extremely rare with carboxylates. 2 also consists of two Fe 6 units, differing in their ligation from those in 1, and this time linked together into a linear structure by a central {Na 2 (NO 3 ) 2 } bridging unit. 3 is a linear Fe 3 complex with no monoatomic bridges between Fe III ions, a very rare situation in Fe III chemistry with any ligands, and unprecedented in Fe carboxylate chemistry. The distinct differences observed in arsinate vs carboxylate ligation modes are rationalized largely based on the greater basicity of the former vs the latter. Variable-temperature dc and ac magnetic susceptibility data reveal all Fe 2 pairwise interactions to be antiferromagnetic. For 1 and 2, the different J ij couplings were estimated by use of a magnetostructural correlation for high nuclearity Fe III -oxo clusters and by density functional theory calculations using broken symmetry methods, allowing identification of their relative spin vector alignments and thus rationalization of their S = 0 ground states. The J ij values were then used as input values to give excellent fits of the experimental χM T vs T data. For 3, the fits of the experimental χM T vs T data to the Van Vleck equation or with PHI gave a very weak J 12 = -0.8(1) cm -1 (H = –2JŠ i ·Š j convention) between adjacent Fe III ions, and an S = 5/2 ground state. Furthermore, these initial Fe III arsinate complexes also provide structural parameters that help validate literature assignments of arsinate binding modes to iron oxide/hydroxide minerals as part of environmental concerns of using arsenic-containing herbicides in agriculture.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

DOE OSTI2025

A 28 nm multiply-accumulate ASIC architecture for on-chip data compression in MHz frame rate X-ray and electron pixel detectors

Modern X-ray detector systems urgently require compact, efficient, and fast data compression schemes to handle the transmission of big data from pixel arrays, enabling frame rates in the MHz regime. Here, in this work, a data compression ASIC that implements a streaming fixed-length lossy compression scheme is introduced and analyzed, proving the feasibility and benefits of on-chip compression. The compression scheme utilizes a vector matrix product logic, which performs a number of floating-point multiplications, additions, and accumulations. The logic is verified, synthesized, and shown to fit in the area resource available for the X-ray detector under study, which comprises 192 × 168 pixels each of 12-bit width, and having a total area of 20 mm× 20 mm, about 2 mm× 20 mm of which are available for the digital logic. Several system architectures, precisions, and compression ratios ranging from 100 to 250 were analyzed to pave the way for on-chip fixed-length compression (e.g., principal component analysis, singular value decomposition) and data reduction (e.g., azimuthal integration) for X-ray and electron detectors.

Data compression↗

DOE OSTI2023

Xylella fastidiosa modulates exopolysaccharide polymer length and the dynamics of biofilm development with a β-1,4-endoglucanase

Xylella fastidiosa is a Gram-negative bacterium that causes disease in many economically important crops. It colonizes the plant host xylem and the mouthparts of its insect vectors where it produces exopolysaccharide (EPS) and forms robust biofilms. Typically, the ability to form a biofilm enhances virulence, but X. fastidiosa does not fit neatly into that paradigm. Instead, X. fastidiosa enters into biofilms to attenuate its movement in the xylem, which, in turn, slows disease progression. In most of its over 600 known plant hosts, X. fastidiosa behaves as a benign commensal, but in some hosts like Vitis vinifera grapevines, it acts as a pathogen. Its ability to attenuate its own virulence in susceptible hosts may be a remnant of its commensal lifestyle in other hosts. Here, we demonstrate that X. fastidiosa utilizes a β-1,4 endoglucanase to cleave its self-produced β-1,4-glucan exopolysaccharide polymer to process it from a higher molecular weight to a lower molecular weight polymer. This processing mediates surface adherence of the cells and ultimately governs overall biofilm architecture, indicating enzymatic pruning of the EPS plays a key role in biofilm-mediated attenuation of X. fastidiosa in planta and, thus, is a key vestige that links its commensal behaviors to its parasitic behaviors in specific hosts.

59 BASIC BIOLOGICAL SCIENCES↗

NASA NTRS1980

Fast, Conservative Algorithm for Solving the Transonic Full-Potential Equation

A fast, fully implicit approximate factorization algorithm designed to solve the conservative, transonic, full-potential equation in either two or three dimensions is described. The algorithm uses an upwind bias of the density coefficient for stability in supersonic regions. This provides an effective upwind difference of the streamwise terms for any orientation of the velocity vector (i.e., rotated differencing), thereby greatly enhancing the reliability of the present algorithm. A numerical transformation is used to establish an arbitrary body-fitted, finite-difference mesh. Computed results for both airfoils and simplified wings demonstrate substantial improvement in convergence speed for the new algorithm relative to standard successive-line over-relaxation algorithms.

Holst, Terry L.↗

DOE OSTI2020

An arbitrarily high-order three-dimensional Cartesian-grid method for reconstructing interfaces from volume fraction fields

Here Tthis work describes a newly developed, arbitrarily high-order Cartesian-grid method for reconstructing material interfaces from a volume fraction field. The method begins by identifying all of the grid cells in the volume fraction field that are intersected by the interface and need to be approximated by the reconstruction scheme. Finite-differences are used to calculate the gradient of the volume fraction field and provide an estimate of the surface normal in all of the interfacial grid cells. Groups of connected grid cells are then identified which all have the same dominant component of the normal vector. This grouping by orientation determines the proper dependent variable to use in the surface reconstruction (e.g. for a 2D curve, this step determines if the surface will be approximated by a function of x or y). A cumulative integral over the surface is constructed and fit using b-splines for two-dimensional problems or tensor-product b-splines for three-dimensional problems. This construction allows for the interface to be recovered through application of the second fundamental theorem of calculus. Fitting the cumulative integral with $\mathscr{N}$ th-order b-splines (or tensor-product b-splines) yields an ($\mathscr{N}$-1) th-order convergence rate of the interface shape. Differentiation of the b-spline interface function(s) allows for the high-order approximation of the normal vector and curvature to be obtained directly anywhere along b-spline. Together, the proposed reconstruction technique can achieve arbitrarily high mesh convergence rates. Validation tests are presented with mesh convergence rates ranging from fourth- to tenth-order.

97 MATHEMATICS AND COMPUTING↗