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At least 145 records · Page 8

Advancing Aviation Security

Air travel is a popular mode of transportation. Each year, more than 600 million people board U.S. flights for business or pleasure. As demonstrated on 9/11, a coordinated terrorist strike on commercial airlines has devastating consequences where many lives could be lost and the nation’s economy could be crippled. The Transportation Security Administration (TSA) has worked diligently to enhance security at airports and on flights so that people and cargo can continue to move freely. Today, all passengers and every piece of checked or carry-on luggage are screened before they are permitted on an aircraft. X-ray systems and walk-through metal detectors allow security personnel to identify dangerous metal objects, such as guns and knives. A more complex problem is the detection of explosives, where detection technologies such as multiple-energy X-ray radiography, computed tomography (CT), full body scanners using millimeter wave and X-ray backscatter and other techniques are used to screen for explosives hidden in luggage, in cargo and on the people boarding the aircraft. Scientists and engineers at the Lawrence Livermore National Laboratory (LLNL) are working with the Department of Homeland Security (DHS), Science and Technology Directorate (S&T), Explosives Division (EXD) to help improve aviation security by evaluating and enhancing the performance of next-generation explosives detection technologies. LLNL is providing subject matter expertise to TSA for their multi-billion dollar procurements of explosive detection system (EDS) for the nation’s airports and provides recommendations for process and system improvements. To further improve aviation security, EXD is funding research at LLNL to develop advanced explosives detection technologies that can more accurately discriminate between a wide range of explosives and non-threat materials. One challenge with scanning for explosives is that some nonthreatening materials share similar characteristics with actual threats, leading to false positives or false alarms. When an alarm is generated, security personnel must review the scan images to clear the alarm or manually open and verify the bag’s contents, which can increase labor costs and lead to passenger delays. The Livermore efforts currently focus on CT-based applications. First developed for the medical field as a method for diagnosing disease, X-ray CT has become instrumental in various industrial Non-Destructive Evaluation (NDE) applications. Explosives detection equipment that incorporates CT uses a broad-spectrum X-ray beam to capture projections of an object, in particular, the objects inside a piece of luggage. The CT system then applies complex reconstruction algorithms to the projections to produce a three-dimensional representation of the luggage and its contents. Automated threat-detection algorithms (also referred to as threat-recognition algorithms) further process the images to separate each item and flag potential threats for further review (see Figure 1). Transportation security officers can then examine these images and the relevant data to determine whether further interrogation is needed. LLNL has also performed research on advanced X-ray carry-on bag inspection systems and is helping to better understand the performance of X-ray backscatter and millimeter wave passenger screening systems.

42 ENGINEERING↗

A region-appearance-based adaptive variational model for 3D liver segmentation

Purpose: Liver segmentation from computed tomography images is a challenging task owing to pixel intensity overlapping, ambiguous edges, and complex backgrounds. The authors address this problem with a novel active surface scheme, which minimizes an energy functional combining both edge- and region-based information. Methods: In this semiautomatic method, the evolving surface is principally attracted to strong edges but is facilitated by the region-based information where edge information is missing. As avoiding oversegmentation is the primary challenge, the authors take into account multiple features and appearance context information. Discriminative cues, such as multilayer consecutiveness and local organ deformation are also implicitly incorporated. Case-specific intensity and appearance constraints are included to cope with the typically large appearance variations over multiple images. Spatially adaptive balancing weights are employed to handle the nonuniformity of image features. Results: Comparisons and validations on difficult cases showed that the authors’ model can effectively discriminate the liver from adhering background tissues. Boundaries weak in gradient or with no local evidence (e.g., small edge gaps or parts with similar intensity to the background) were delineated without additional user constraint. With an average surface distance of 0.9 mm and an average volume overlap of 93.9% on the MICCAI data set, the authors’ model outperformed most state-of-the-art methods. Validations on eight volumes with different initial conditions had segmentation score variances mostly less than unity. Conclusions: The proposed model can efficiently delineate ambiguous liver edges from complex tissue backgrounds with reproducibility. Quantitative validations and comparative results demonstrate the accuracy and efficacy of the model.

62 RADIOLOGY AND NUCLEAR MEDICINE↗

GPU-accelerated regularized iterative reconstruction for few-view cone beam CT

Purpose: The present work proposes an iterative reconstruction technique designed for x-ray transmission computed tomography (CT). The main objective is to provide a model-based solution to the cone-beam CT reconstruction problem, yielding accurate low-dose images via few-views acquisitions in clinically acceptable time frames. Methods: The proposed technique combines a modified ordered subsets convex (OSC) algorithm and the total variation minimization (TV) regularization technique and is called OSC-TV. The number of subsets of each OSC iteration follows a reduction pattern in order to ensure the best performance of the regularization method. Considering the high computational cost of the algorithm, it is implemented on a graphics processing unit, using parallelization to accelerate computations. Results: The reconstructions were performed on computer-simulated as well as human pelvic cone-beam CT projection data and image quality was assessed. In terms of convergence and image quality, OSC-TV performs well in reconstruction of low-dose cone-beam CT data obtained via a few-view acquisition protocol. It compares favorably to the few-view TV-regularized projections onto convex sets (POCS-TV) algorithm. It also appears to be a viable alternative to full-dataset filtered backprojection. Execution times are of 1–2 min and are compatible with the typical clinical workflow for nonreal-time applications. Conclusions: Considering the image quality and execution times, this method may be useful for reconstruction of low-dose clinical acquisitions. It may be of particular benefit to patients who undergo multiple acquisitions by reducing the overall imaging radiation dose and associated risks.

60 APPLIED LIFE SCIENCES↗

WE-FG-207B-05: Iterative Reconstruction Via Prior Image Constrained Total Generalized Variation for Spectral CT

Purpose: To investigate iterative reconstruction via prior image constrained total generalized variation (PICTGV) for spectral computed tomography (CT) using fewer projections while achieving greater image quality. Methods: The proposed PICTGV method is formulated as an optimization problem, which balances the data fidelity and prior image constrained total generalized variation of reconstructed images in one framework. The PICTGV method is based on structure correlations among images in the energy domain and high-quality images to guide the reconstruction of energy-specific images. In PICTGV method, the high-quality image is reconstructed from all detector-collected X-ray signals and is referred as the broad-spectrum image. Distinct from the existing reconstruction methods applied on the images with first order derivative, the higher order derivative of the images is incorporated into the PICTGV method. An alternating optimization algorithm is used to minimize the PICTGV objective function. We evaluate the performance of PICTGV on noise and artifacts suppressing using phantom studies and compare the method with the conventional filtered back-projection method as well as TGV based method without prior image. Results: On the digital phantom, the proposed method outperforms the existing TGV method in terms of the noise reduction, artifacts suppression, and edge detail preservation. Compared to that obtained by the TGV based method without prior image, the relative root mean square error in the images reconstructed by the proposed method is reduced by over 20%. Conclusion: The authors propose an iterative reconstruction via prior image constrained total generalize variation for spectral CT. Also, we have developed an alternating optimization algorithm and numerically demonstrated the merits of our approach. Results show that the proposed PICTGV method outperforms the TGV method for spectral CT.

60 APPLIED LIFE SCIENCES↗

Assessment of Horizontal External Stresses in the Vorkuta Mine Field Using Seismic Tomography Data

3D geomechanical model of the Vorkuta Mine, Pechora Coal Basin, has been developed and implemented numerically. By the data on dynamic events recorded by stationary seismic stations, tomography of the study object is performed, and velocity of elastic waves is recovered in the illuminated area of the object. The boundary value inverse problem on horizontal external stresses by stress distribution found using empirical relations between elastic wave velocities and stresses determined in the laboratoryscale experiments is formulated and solved.

01 COAL, LIGNITE, AND PEAT↗

L{sub 1/2} regularization based numerical method for effective reconstruction of bioluminescence tomography

Even though bioluminescence tomography (BLT) exhibits significant potential and wide applications in macroscopic imaging of small animals in vivo, the inverse reconstruction is still a tough problem that has plagued researchers in a related area. The ill-posedness of inverse reconstruction arises from insufficient measurements and modeling errors, so that the inverse reconstruction cannot be solved directly. In this study, an l{sub 1/2} regularization based numerical method was developed for effective reconstruction of BLT. In the method, the inverse reconstruction of BLT was constrained into an l{sub 1/2} regularization problem, and then the weighted interior-point algorithm (WIPA) was applied to solve the problem through transforming it into obtaining the solution of a series of l{sub 1} regularizers. The feasibility and effectiveness of the proposed method were demonstrated with numerical simulations on a digital mouse. Stability verification experiments further illustrated the robustness of the proposed method for different levels of Gaussian noise.

60 APPLIED LIFE SCIENCES↗

Theoretical limit of spatial resolution in diffuse optical tomography using a perturbation model

We have assessed the limit of spatial resolution of timedomain diffuse optical tomography (DOT) based on a perturbation reconstruction model. From the viewpoint of the structure reconstruction accuracy, three different approaches to solving the inverse DOT problem are compared. The first approach involves reconstruction of diffuse tomograms from straight lines, the second – from average curvilinear trajectories of photons and the third – from total banana-shaped distributions of photon trajectories. In order to obtain estimates of resolution, we have derived analytical expressions for the point spread function and modulation transfer function, as well as have performed a numerical experiment on reconstruction of rectangular scattering objects with circular absorbing inhomogeneities. It is shown that in passing from reconstruction from straight lines to reconstruction using distributions of photon trajectories we can improve resolution by almost an order of magnitude and exceed the accuracy of reconstruction of multi-step algorithms used in DOT. (optical tomography)

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Challenges in solving structures from radiation-damaged tomograms of protein nanocrystals assessed by simulation

Structure-determination methods are needed to resolve the atomic details that underlie protein function. X-ray crystallography has provided most of our knowledge of protein structure, but is constrained by the need for large, well ordered crystals and the loss of phase information. The rapidly developing methods of serial femtosecond crystallography, micro-electron diffraction and single-particle reconstruction circumvent the first of these limitations by enabling data collection from nanocrystals or purified proteins. However, the first two methods also suffer from the phase problem, while many proteins fall below the molecular-weight threshold required for single-particle reconstruction. Cryo-electron tomography of protein nanocrystals has the potential to overcome these obstacles of mainstream structure-determination methods. Here, a data-processing scheme is presented that combines routines from X-ray crystallography and new algorithms that have been developed to solve structures from tomograms of nanocrystals. This pipeline handles image-processing challenges specific to tomographic sampling of periodic specimens and is validated using simulated crystals. The tolerance of this workflow to the effects of radiation damage is also assessed. The simulations indicate a trade-off between a wider tilt range to facilitate merging data from multiple tomograms and a smaller tilt increment to improve phase accuracy. Since phase errors, but not merging errors, can be overcome with additional data sets, these results recommend distributing the dose over a wide angular range rather than using a finer sampling interval to solve the protein structure.

59 BASIC BIOLOGICAL SCIENCES↗

Plug-and-Play Priors for Bright Field Electron Tomography and Sparse Interpolation

Many material and biological samples in scientific imaging are characterized by nonlocal repeating structures. These are studied using scanning electron microscopy and electron tomography. Sparse sampling of individual pixels in a two-dimensional image acquisition geometry, or sparse sampling of projection images with large tilt increments in a tomography experiment, can enable high speed data acquisition and minimize sample damage caused by the electron beam. In this paper, we present an algorithm for electron tomographic reconstruction and sparse image interpolation that exploits the nonlocal redundancy in images. We adapt a framework, termed plug-and-play priors, to solve these imaging problems in a regularized inversion setting. The power of the plug-and-play approach is that it allows a wide array of modern denoising algorithms to be used as a “prior model” for tomography and image interpolation. We also present sufficient mathematical conditions that ensure convergence of the plug-and-play approach, and we use these insights to design a new nonlocal means denoising algorithm. Finally, we demonstrate that the algorithm produces higher quality reconstructions on both simulated and real electron microscope data, along with improved convergence properties compared to other methods.

47 OTHER INSTRUMENTATION↗

Electronic Scanning Strategies in Adaptive Electrical Capacitance Volume Tomography: Tradeoffs and Prospects

Electrical Capacitance Volume Tomography (ECVT) has been applied for imaging of multiphase flows found in industrial applications. The ill-posed nature of the image reconstruction problem in ECVT and the consequent low resolution can be alleviated by employing electronic scanning enabled by electrode segmentation and reconfiguration during data acquisition. Here we study electronic scanning strategies that mimic physical rotation and shifting of the sensor along its symmetry axis. First, we study the feasibility of electronic scanning by analyzing the capacitance transducer circuit in SPICE. Then, we simulate electronic scanning using the finite element method for different electrode shapes, for which we compare the image reconstruction results and acquisition time. We find a noticeable improvement in image resolution for the scanning cases over conventional ECVT. Lastly, among the scanning cases, we emphasize a particular electrode shape that provides the best image resolution along with the minimal amount of acquisition time.

47 OTHER INSTRUMENTATION↗

A Dirichlet process mixture model for automatic {sup 18}F-FDG PET image segmentation: Validation study on phantoms and on lung and esophageal lesions

Purpose: The aim of this study was to implement a Dirichlet process mixture (DPM) model for automatic tumor edge identification on {sup 18}F-fluorodeoxyglucose positron emission tomography ({sup 18}F-FDG PET) images by optimizing the parameters on which the algorithm depends, to validate it experimentally, and to test its robustness. Methods: The DPM model belongs to the class of the Bayesian nonparametric models and uses the Dirichlet process prior for flexible nonparametric mixture modeling, without any preliminary choice of the number of mixture components. The DPM algorithm implemented in the statistical software package R was used in this work. The contouring accuracy was evaluated on several image data sets: on an IEC phantom (spherical inserts with diameter in the range 10–37 mm) acquired by a Philips Gemini Big Bore PET-CT scanner, using 9 different target-to-background ratios (TBRs) from 2.5 to 70; on a digital phantom simulating spherical/uniform lesions and tumors, irregular in shape and activity; and on 20 clinical cases (10 lung and 10 esophageal cancer patients). The influence of the DPM parameters on contour generation was studied in two steps. In the first one, only the IEC spheres having diameters of 22 and 37 mm and a sphere of the digital phantom (41.6 mm diameter) were studied by varying the main parameters until the diameter of the spheres was obtained within 0.2% of the true value. In the second step, the results obtained for this training set were applied to the entire data set to determine DPM based volumes of all available lesions. These volumes were compared to those obtained by applying already known algorithms (Gaussian mixture model and gradient-based) and to true values, when available. Results: Only one parameter was found able to significantly influence segmentation accuracy (ANOVA test). This parameter was linearly connected to the uptake variance of the tested region of interest (ROI). In the first step of the study, a calibration curve was determined to automatically generate the optimal parameter from the variance of the ROI. This “calibration curve” was then applied to contour the whole data set. The accuracy (mean discrepancy between DPM model-based contours and reference contours) of volume estimation was below (1 ± 7)% on the whole data set (1 SD). The overlap between true and automatically segmented contours, measured by the Dice similarity coefficient, was 0.93 with a SD of 0.03. Conclusions: The proposed DPM model was able to accurately reproduce known volumes of FDG concentration, with high overlap between segmented and true volumes. For all the analyzed inserts of the IEC phantom, the algorithm proved to be robust to variations in radius and in TBR. The main advantage of this algorithm was that no setting of DPM parameters was required in advance, since the proper setting of the only parameter that could significantly influence the segmentation results was automatically related to the uptake variance of the chosen ROI. Furthermore, the algorithm did not need any preliminary choice of the optimum number of classes to describe the ROIs within PET images and no assumption about the shape of the lesion and the uptake heterogeneity of the tracer was required.

60 APPLIED LIFE SCIENCES↗

CHROMOSPHERIC DIAGNOSIS WITH Ca II LINES: FORWARD MODELING IN FORWARD SCATTERING. I

This paper presents a synthetic tomography of the quiet solar chromosphere formed by spatial maps of scattering polarization. It has been calculated for the Ca II 8498, 8542, and 3934 Å lines by solving the non-LTE radiative transfer problem of the second kind in a three-dimensional atmosphere model obtained from realistic magneto-hydrodynamical simulations. Our investigation focuses on the linear polarization signals induced by kinematics, radiation field anisotropy, and the Hanle effect in forward-scattering geometry. Thus, instead of considering slit profiles at the limb as normally done in the study of the second solar spectrum, we synthesize and analyze spatial maps of polarization at the disk center. This allows us to understand the spatial signatures of dynamics and magnetic field in the linear polarization in order to discriminate them observationally. Our results suggest some ideas for chromospheric diagnosis that will be developed throughout a series of papers. In particular, Hanle polarity inversion lines and dynamic Hanle diagrams are two concepts introduced in the present work. We find that chromospheric dynamics and magnetic field topology create spatial polarization fingerprints that trace the dynamic situation of the plasma and the magnetic field. This allows us to reconstruct the magnetic field intensity in the middle chromosphere using Stokes V along grooves of null linear polarization. We finally address the problems of diagnosing Hanle saturation and kinematic amplification of scattering signals using Hanle diagrams.

79 ASTRONOMY AND ASTROPHYSICS↗

A novel computer-aided lung nodule detection system for CT images

Purpose: The paper presents a complete computer-aided detection (CAD) system for the detection of lung nodules in computed tomography images. A new mixed feature selection and classification methodology is applied for the first time on a difficult medical image analysis problem. Methods: The CAD system was trained and tested on images from the publicly available Lung Image Database Consortium (LIDC) on the National Cancer Institute website. The detection stage of the system consists of a nodule segmentation method based on nodule and vessel enhancement filters and a computed divergence feature to locate the centers of the nodule clusters. In the subsequent classification stage, invariant features, defined on a gauge coordinates system, are used to differentiate between real nodules and some forms of blood vessels that are easily generating false positive detections. The performance of the novel feature-selective classifier based on genetic algorithms and artificial neural networks (ANNs) is compared with that of two other established classifiers, namely, support vector machines (SVMs) and fixed-topology neural networks. A set of 235 randomly selected cases from the LIDC database was used to train the CAD system. The system has been tested on 125 independent cases from the LIDC database. Results: The overall performance of the fixed-topology ANN classifier slightly exceeds that of the other classifiers, provided the number of internal ANN nodes is chosen well. Making educated guesses about the number of internal ANN nodes is not needed in the new feature-selective classifier, and therefore this classifier remains interesting due to its flexibility and adaptability to the complexity of the classification problem to be solved. Our fixed-topology ANN classifier with 11 hidden nodes reaches a detection sensitivity of 87.5% with an average of four false positives per scan, for nodules with diameter greater than or equal to 3 mm. Analysis of the false positive items reveals that a considerable proportion (18%) of them are smaller nodules, less than 3 mm in diameter. Conclusions: A complete CAD system incorporating novel features is presented, and its performance with three separate classifiers is compared and analyzed. The overall performance of our CAD system equipped with any of the three classifiers is well with respect to other methods described in literature.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

Liver segmentation in contrast enhanced CT data using graph cuts and interactive 3D segmentation refinement methods

Purpose: Liver segmentation is an important prerequisite for the assessment of liver cancer treatment options like tumor resection, image-guided radiation therapy (IGRT), radiofrequency ablation, etc. The purpose of this work was to evaluate a new approach for liver segmentation. Methods: A graph cuts segmentation method was combined with a three-dimensional virtual reality based segmentation refinement approach. The developed interactive segmentation system allowed the user to manipulate volume chunks and/or surfaces instead of 2D contours in cross-sectional images (i.e, slice-by-slice). The method was evaluated on twenty routinely acquired portal-phase contrast enhanced multislice computed tomography (CT) data sets. An independent reference was generated by utilizing a currently clinically utilized slice-by-slice segmentation method. After 1 h of introduction to the developed segmentation system, three experts were asked to segment all twenty data sets with the proposed method. Results: Compared to the independent standard, the relative volumetric segmentation overlap error averaged over all three experts and all twenty data sets was 3.74%. Liver segmentation required on average 16 min of user interaction per case. The calculated relative volumetric overlap errors were not found to be significantly different [analysis of variance (ANOVA) test, p = 0.82] between experts who utilized the proposed 3D system. In contrast, the time required by each expert for segmentation was found to be significantly different (ANOVA test, p = 0.0009). Major differences between generated segmentations and independent references were observed in areas were vessels enter or leave the liver and no accepted criteria for defining liver boundaries exist. In comparison, slice-by-slice based generation of the independent standard utilizing a live wire tool took 70.1 min on average. A standard 2D segmentation refinement approach applied to all twenty data sets required on average 38.2 min of user interaction and resulted in statistically not significantly different segmentation error indices (ANOVA test, significance level of 0.05). Conclusions: All three experts were able to produce liver segmentations with low error rates. User interaction time savings of up to 71% compared to a 2D refinement approach demonstrate the utility and potential of our approach. The system offers a range of different tools to manipulate segmentation results, and some users might benefit from a longer learning phase to develop efficient segmentation refinement strategies. The presented approach represents a generally applicable segmentation approach that can be applied to many medical image segmentation problems.

62 RADIOLOGY AND NUCLEAR MEDICINE↗

Variable order spherical harmonic expansion scheme for the radiative transport equation using finite elements

Highlights: {yields} We developed a variable order global basis scheme to solve light transport in 3D. {yields} Based on finite elements, the method can be applied to a wide class of geometries. {yields} It is computationally cheap when compared to the fixed order scheme. {yields} Comparisons with local basis method and other models demonstrate its accuracy. {yields} Addresses problems encountered n modeling of light transport in human brain. - Abstract: We propose the P{sub N} approximation based on a finite element framework for solving the radiative transport equation with optical tomography as the primary application area. The key idea is to employ a variable order spherical harmonic expansion for angular discretization based on the proximity to the source and the local scattering coefficient. The proposed scheme is shown to be computationally efficient compared to employing homogeneously high orders of expansion everywhere in the domain. In addition the numerical method is shown to accurately describe the void regions encountered in the forward modeling of real-life specimens such as infant brains. The accuracy of the method is demonstrated over three model problems where the P{sub N} approximation is compared against Monte Carlo simulations and other state-of-the-art methods.

97 MATHEMATICS AND COMPUTING↗

Internal curing of cement pastes by means of superabsorbent polymers visualized by neutron tomography

Highlights: • The kinetics of water release from SAPs were studied by neutron tomography. • The time window for internal curing was linked to the water release from SAPs. • The water release links to the SAP effectiveness to mitigate autogenous shrinkage. • One SAP type was effective while another prematurely released its stored water. Superabsorbent polymers (SAPs) are used to counteract self-desiccation in order to mitigate autogenous shrinkage, a problem in cementitious systems with a low water-to-cement ratio. The release kinetics during internal curing are of importance as not all SAP types are able to efficiently mitigate autogenous shrinkage. In this study, neutron tomography is used to study and visualize the water release kinetics over time. Per-voxel analysis of the time-attenuation curve was performed using piecewise-constant functions. Two different SAP types were studied, one being able to mitigate autogenous shrinkage and one quickly releasing its stored water after final setting. The tomography results correspond to autogenous shrinkage measurements and nuclear magnetic resonance tests. The visualization provides information on the time of water release by the SAPs after setting and the time window of internal curing. This opens additional insights towards the application of SAPs in the construction sector and provides information on the mechanism of internal curing.

36 MATERIALS SCIENCE↗

Stellar and Accretion Disk Parameters of the Close Binary HD 50526

We present a photometric and spectroscopic study of HD 50526, an ellipsoidal binary member of the group Double Periodic Variable stars. Performing data mining in photometric surveys and conducting new spectroscopic observations with several spectrographs during 2008–2015, we obtained orbital and stellar parameters of the system. The radial velocities were analyzed with the genetic PIKAIA algorithm, whereas Doppler tomography maps for the Hα and Hβ lines were constructed with the Total Variation Minimization code. An optimized simplex algorithm was used to solve the inverse problem adjusting the light curve with the best stellar parameters for the system. We find an orbital period of 6.ͩ701 ± 0.ͩ001 and a long photometric cycle of 191 ± 2 days. We detected the spectral features of the coldest star and modeled it with a logg=2.79±0.02 dex giant of mass 1.13 ± 0.02 M {sub ⊙} and effective temperature 10500 ± 125 K. In addition, we determine a mass ratio q = 0.206 ± 0.033 and that the hot star is a B-type dwarf of mass 5.48 ± 0.02 M {sub ⊙}. The V-band orbital light curve can be modeled including the presence of an accretion disk around the hotter star. This fills the Roche lobe of the hotter star and has a radius 14.74 ± 0.02 R {sub ⊙} and the temperature at the outer edge is 9400 K. Two bright spots located in the disk account for the global morphology of the light curve. The Doppler tomography maps of Hα and Hβ reveal complex structures of mass fluxes in the system.

79 ASTRONOMY AND ASTROPHYSICS↗