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NASA NTRS2006

Fluorescent Applications to Crystallization

By covalently modifying a subpopulation, less than or equal to 1%, of a macromolecule with a fluorescent probe, the labeled material will add to a growing crystal as a microheterogeneous growth unit. Labeling procedures can be readily incorporated into the final stages of purification, and tests with model proteins have shown that labeling u to 5 percent of the protein molecules does not affect the X-ray data quality obtained . The presence of the trace fluorescent label gives a number of advantages. Since the label is covalently attached to the protein molecules, it "tracks" the protein s response to the crystallization conditions. The covalently attached probe will concentrate in the crystal relative to the solution, and under fluorescent illumination crystals show up as bright objects against a darker background. Non-protein structures, such as salt crystals, do not show up under fluorescent illumination. Crystals have the highest protein concentration and are readily observed against less bright precipitated phases, which under white light illumination may obscure the crystals. Automated image analysis to find crystals should be greatly facilitated, without having to first define crystallization drop boundaries as the protein or protein structures is all that shows up. Fluorescence intensity is a faster search parameter, whether visually or by automated methods, than looking for crystalline features. Preliminary tests, using model proteins, indicates that we can use high fluorescence intensity regions, in the absence of clear crystalline features or "hits", as a means for determining potential lead conditions. A working hypothesis is that more rapid amorphous precipitation kinetics may overwhelm and trap more slowly formed ordered assemblies, which subsequently show up as regions of brighter fluorescence intensity. Experiments are now being carried out to test this approach using a wider range, of proteins. The trace fluorescently labeled crystals will also emit with sufficient intensity to aid in the automation of crystal alignment using relatively low cost optics, further increasing throughput at synchrotrons.

Pusey, Marc L.↗

NASA NTRS2008

Chandra Confirmation of a Pulsar Wind Nebula in DA 495

As part of a multiwavelength study of the unusual radio supernova remnant DA 495, we present observations made with the Chandra X-ray Observatory. Imaging and spectroscopic analysis confirms the previously detected X-ray source at the heart of the annular radio nebula, establishing the radiative properties of two key emission components: a soft unresolved source with a blackbody temperature of 1 MK consistent with a neutron star, surrounded by a nontherma1 nebula 40" in diameter exhibiting a power-law spectrum with photon index Gamma = 1.63, typical of a pulsar wind nebula. Morphologically, the nebula appears to be slightly extended along a direction, in projection on the sky, previously demonstrated to be of significance in radio and ASCA observations; we argue that this represents the orientation of the pulsar spin axis. At smaller scales, a narrow X-ray feature is seen extending out 5" from the point source, but energetic arguments suggest that it is not the resolved termination shock of the pulsar wind against the ambient medium. Finally, we argue based on synchrotron lifetimes in the nebular magnetic field that DA 495 represents the first example of a pulsar wind nebula in which electromagnetic flux makes up a significant part, together with particle flux, of the neutron star's wind.

Arzoumanian, Z.↗

NASA NTRS2006

Fluorescent Approaches to High Throughput Crystallography

We have shown that by covalently modifying a subpopulation, less than or equal to 1%, of a macromolecule with a fluorescent probe, the labeled material will add to a growing crystal as a microheterogeneous growth unit. Labeling procedures can be readily incorporated into the final stages of purification, and the presence of the probe at low concentrations does not affect the X-ray data quality or the crystallization behavior. The presence of the trace fluorescent label gives a number of advantages when used with high throughput crystallizations. The covalently attached probe will concentrate in the crystal relative to the solution, and under fluorescent illumination crystals show up as bright objects against a dark background. Non-protein structures, such as salt crystals, will not incorporate the probe and will not show up under fluorescent illumination. Brightly fluorescent crystals are readily found against less bright precipitated phases, which under white light illumination may obscure the crystals. Automated image analysis to find crystals should be greatly facilitated, without having to first define crystallization drop boundaries as the protein or protein structures is all that shows up. Fluorescence intensity is a faster search parameter, whether visually or by automated methods, than looking for crystalline features. We are now testing the use of high fluorescence intensity regions, in the absence of clear crystalline features or "hits", as a means for determining potential lead conditions. A working hypothesis is that kinetics leading to non-structured phases may overwhelm and trap more slowly formed ordered assemblies, which subsequently show up as regions of brighter fluorescence intensity. Preliminary experiments with test proteins have resulted in the extraction of a number of crystallization conditions from screening outcomes based solely on the presence of bright fluorescent regions. Subsequent experiments will test this approach using a wider range of proteins. The trace fluorescently labeled crystals will also emit with sufficient intensity to aid in the automation of crystal alignment using relatively low cost optics, further increasing throughput at synchrotrons.

Pusey, Marc L.↗

NASA NTRS2000

Massive Star Formation in NGC4038/4039: HII Regions and Supernova Remnants in "The Antennae"

The nearest merger, NGC4038/4039 ("The Antennae, Arp244), is undergoing a starburst apparently triggered and driven by the ongoing interaction. The system provides an excellent laboratory to study star formation processes because well-studied and nearby (21 Mpc assumed here). Models of the interaction suggest that the interaction's first periapse occurred 200 Myr ago, and that final coalescence will occur in another 100 Myr. Blue and H alpha images show a continuous loop of bright knots around the NGC4038 (northern) nucleus, continuing down through the NGC4039 (southern) nucleus. Recent HST V and I images resolve the star-forming knots into several thousand blue compact clusters, with ages 5Myr for the youngest clusters. Far Ultraviolet (lambda 1500A) observations directly detect O and B stars in regions of low extinction; the total mass of young stars so observed is approximately 8 x 10 (exp 5) solar mass. FIR observations imply a star formation rate of approximately 5 M (sub 0) dot yr (sup -1) or greater. We used the VLA at 6 and 4 cm to obtain high resolution radio images of the star-formation regions in NGC4038/4038. We used high resolution imaging to identify compact radio emitting regions and spectral indices of the compact regions to differentiate between thermal sources such as HII regions (flat spectra) and supernova, remnants (steep spectra). We found that compact radio sources produce approximately 12% and/sim 25 strongest radio emission occurs between the galaxies, at an optically unremarkable location near but not coincident with an extremely red cluster. The radio peak is at a location of intense star formation (as detected in the mid-IR, reference?) and of dense molecular gas. We identify 115 individual compact 6cm radio sources and 63 individual 4 cm sources in the system, to a limiting luminosity of approximately 2 x 10 (exp 1) 8 W Hz (sup -1) (or /sim4x the luminosity of Cas A). Of the strongest sources, for which the h flux densities are large enough to measure spectral indices with reasonable errors, we find that one third have nominally flat radio spectra (presumeable dominated by thermal emission from HII regions) and two thirds have nominally steep spectra (presumeably dominated by synchrotron emission from supernova, remnants). For the thermal sources, we derive typical masses of 10 (exp 4) to 10 (exp 5) solar mass in massive young stars and ionized gas masses of 10 (exp 3) - 10 (exp 4) solar mass. From the steep-spectrum sources, we derive a total system supernova rate of 0.2-0.3 yr (sup -1), about an order of magnitude larger than that expected from the currently observed O-star population. Taken together, these suggest that that a large number of O stars may have formed in the system in a short-lived burst, less than 10 (exp 6) yr in duration and about 3-4 Myr ago.

Neff, S. G.↗

NASA NTRS2019

Expanding the Sample of Radio Minihalos in Galaxy Clusters

Radio minihalos are diffuse synchrotron sources of unknown origin found in the cool cores of some galaxy clusters. We use GMRT and VLA data to expand the sample of minihalos by reporting three new minihalo detections (A2667, A907, and PSZ1 G139.61+24.20) and confirming minihalos in five clusters (MACS J0159.8–0849, MACS J0329.6–0211, RXC J2129.6+0005, AS 780, and A3444). With these new detections and confirmations, the sample now stands at 23, the largest sample to date. For consistency, we also reanalyze archival VLA 1.4 GHz observations of seven known minihalos. We revisit possible correlations between the nonthermal emission and the thermal properties of their cluster hosts. Consistent with our earlier findings from a smaller sample, we find no strong relation between the minihalo radio luminosity and the total cluster mass. Instead, we find a strong positive correlation between the minihalo radio power and X-ray bolometric luminosity of the cool core (r < 70 kpc). This supplements our earlier result that most, if not all, cool cores in massive clusters contain a minihalo. Comparison of radio and Chandra X-ray images indicates that the minihalo emission is typically confined by concentric sloshing cold fronts in the cores of most of our clusters, supporting the hypothesis that minihalos arise from electron reacceleration by turbulence caused by core gas sloshing. Taken together, our findings suggest that the origin of minihalos should be closely related to the properties of thermal plasma in cluster cool cores.

Galaxies radio continuum↗

NASA NTRS2011

On the Location of the gamma-Ray Outburst Emission in the BL Lacertae Object AO 0235 + 164 Through Observations Across the Electromagnetic Spectrum

We present observations of a major outburst at centimeter, millimeter, optical, X-ray, and gamma-ray wavelengths of the BL Lacertae object AO 0235+164. We analyze the timing of multi-waveband variations in the flux and linear polarization, as well as changes in Very Long Baseline Array images at A = 7 mm with approx.0.15 milliarcsec resolution. The association of the events at different wavebands is confirmed at high statistical significance by probability arguments and Monte Carlo simulations. A series of sharp peaks in optical linear polarization, as well as a pronounced maximum in the 7 mm polarization of a superluminal jet knot, indicate rapid fluctuations in the degree of ordering of the magnetic field. These results lead us to conclude that the outburst occurred in the jet both in the quasi-stationary "core" and in the superluminal knot, both parsecs downstream of the supermassive black hole. We interpret the outburst as a consequence of the propagation of a disturbance, elongated along the line of sight by light-travel time delays, that passes through a standing recollimation shock in the core and propagates down the jet to create the superluminal knot. The multi-wavelength light curves vary together on long timescales (months/ years), but the correspondence is poorer on shorter timescales. This, as well as the variability of the polarization and the dual location of the outburst, agrees with the expectations of a multi-zone emission model in which turbulence plays a major role in modulating the synchrotron and inverse Compton fluxes.

Agudo, Ivan↗

NASA NTRS1998

Comparison of the X-Ray and Radio Light Curves of Quasar PKS 1510--089

We present results for the X-ray-bright superluminal AGN PKS 1510-089 (z=0.36) monitored weekly with the Rossi X-Ray Timing Explorer for the past four years in order to study the origin of X-ray emission from this extremely variable blazer. These RXTE data are compared with weekly cm-band flux and polarization observations from the Michigan Diameter telescope, to identify correlated activity and associated frequency-dependent time delays for constraining X-ray emission models; and bimonthly 7mm VLBA total and linearly polarized intensity imaging to identify temporal associations between X-ray events and the ejection of superluminal components and disturbances in the magnetic field, to test if the X-ray energy release is related to changes in the inner jet flow. Both the X-ray (2-20 keV) and radio flux are highly variable on timescales of weeks. The VLBA mas structure is dominated by a bright core with a weak jet; both the ejection of very fast superluminal knots and changes in the fractional polarization and EVPA of the core on timescales of one to four months are identified. Two outbursts in 1997 are well-resolved in both the centimeter and X-ray bands. Both the strong temporal association and the similar outburst shape support a causal relation, and a discrete cross-correlation analysis identifies that the X-ray lags the radio by 16 days during the bursts. Starting in 1998 the behavior changes: the correlation is weaker with the X-ray possibly leading the radio by six days. During the full time window there is a correlation between bands as expected if the radio photons are upscattered to X-ray energies. The time correlations and difference between the flat X-ray spectral index (0.0 <= alpha <= 0.5 where F(sub v) is proportional to v(exp -alpha)), and the mm-wave synchrotron spectrum (alpha = 0.8) are discussed within the framework of viable SSC models.

Aller, M. F.↗

NASA NTRS2016

NuSTAR and XMM-Newton Observations of the Hard X- Ray Spectrum of Centaurus A

We present simultaneous XMM-Newton and Nuclear Spectroscopic Telescope Array (NuSTAR) observations spanning 3-78 keV of the nearest radio galaxy, Centaurus A (Cen A). The accretion geometry around the central engine in Cen A is still debated, and we investigate possible configurations using detailed X-ray spectral modeling. NuSTAR imaged the central region of Cen A with subarcminute resolution at X-ray energies above 10 keV for the first time, but found no evidence for an extended source or other off-nuclear point sources. The XMM-Newton and NuSTAR spectra agree well and can be described with an absorbed power law with a photon index Gamma = 1.8150 +/- 0.005 and a fluorescent Fe Kaline in good agreement with literature values. The spectrum is greater than 1 MeV. A thermal Comptonization continuum describes the data well, with parameters that agree with values measured by INTEGRAL, in particular an electron temperature kTe between approximately 100-300 keV and seed photon input temperatures between 5 and 50 eV. We do not find evidence for reflection or a broad iron line and put stringent upper limits of R is less than 0.01 on the reflection fraction and accretion disk illumination. We use archival Chandra data to estimate the contribution from diffuse emission, extra-nuclear point sources, and the outer X-ray jet to the observed NuSTAR and XMM-Newton X-ray spectra and find the contribution to be negligible. We discuss different scenarios for the physical origin of the observed hard X-ray spectrum and conclude that the inner disk is replaced by an advection-dominated accretion flow or that the X-rays are dominated by synchrotron self-Compton emission from the inner regions of the radio jet or a combination thereof.

Galaxies: active - galaxies: individual (Centaurus↗

NASA NTRS2005

High-Resolution Electron Energy-Loss Spectroscopy (HREELS) Using a Monochromated TEM/STEM

A 200 keV FEI TF20 XT monochromated (scanning) transmission electron microscope funded by NASA's SRLIDAP program is undergoing installation at Lawrence Livermore National Laboratory. Instrument specifications in STEM mode are Cs =1.0 mm, Cc =1.2 mm, image resolution =0.18 nm, and in TEM mode Cs =1.3 mm, Cc =1.3 mm, information limit =0.14 nm. Key features of the instrument are a voltage-stabilized high tension (HT) supply, a monochromator, a high-resolution electron energy-loss spectrometer/energy filter, a high-resolution annular darkfield detector, and a solid-state x-ray energy-dispersive spectrometer. The high-tension tank contains additional sections for 60Hz and high frequency filtering, resulting in an operating voltage of 200 kV plus or minus 0.005V, a greater than 10-fold improvement over earlier systems. The monochromator is a single Wien filter design. The energy filter is a Gatan model 866 Tridiem-ERS high resolution GIF spec d for less than or equal to 0.15 eV energy resolution with 29 pA of current in a 2 nm diameter probe. 0.13 eV has already been achieved during early installation. The x-ray detector (EDAX/Genesis 4000) has a take-off angle of 20 degrees, an active area of 30 square millimeters, and a solid angle of 0.3 steradians. The higher solid angle is possible because the objective pole-piece allows the detector to be positioned as close as 9.47 mm from the specimen. The voltage-stabilized HT supply, monochromator and GIF enable high-resolution electron energy-loss spectroscopy (HREELS) with energy resolution comparable to synchrotron XANES, but with approximately 100X better spatial resolution. The region between 0 and 100 eV is called the low-loss or valence electron energy-loss spectroscopy (VEELS) region where features due to collective plasma oscillations and single electron transitions of valence electrons are observed. Most of the low-loss VEELS features we are detecting are being observed for the first time in IDPs. A major focus of our research is to understand the origin and significance of these features and how they might be exploited to gain insight about IDPs and other meteoritic materials.

Sai, Z. R.↗

NASA NTRS1994

The nature of the compact X-ray source in the supernova remnant G27.4+0.0

High-resolution X-ray imaging data obtained with ROSAT is used to constrain the nature of the central compact source in the supernova remnant G27.4+0.0. Diffuse emission is seen from throughout the approximately 4 min diameter radio shell, while the central source remains unresolved at approximately 3 sec. We combine archival data from the Einstein HRI, IPC, and MPC with the ROSAT HRI data to define the X-ray spectra of the diffuse and point-like emission. The bulk of the shell radiation is consistent with that of a approximately 10(exp 7) K plasma, although a higher temperature component is also suggested by the data; coupled with the remnant's size and distance, we derive an age of between 500 and 2500 yr. The point source has a substantially harder spectrum, with a power-law photon index less than or approximately equal to 1. A search for periodic modulation from the point source yields upper limits ranging from 10%-35% for periods between 0.025 and 1000 s, depending on the assumed pulse shape. No aperiodic variability on timescales of from 10(exp 3) to 10(exp 8) s is required, although a factor of approximately 2 change between the Einstein and ROSAT eras is possible. We show that the point source cannot represent thermal emission from the surface of a young neutron star and is unlikely to be explained as nonthermal, Crab-like X-ray pulses or a small synchrotron nebula. The most likely models involve accretion-powered systems -- either a wind-fed neutron star with a massive companion or a low-mass X-ray binary. In all probability, this is the youngest X-ray binary in the Galaxy.

Helfand, David J.↗

NASA NTRS1995

ROSAT observations of the unusual supernova remnant CTB 80 containing the pulsar PSR 1951 + 32

The unusal supernova remnant CTB, 80 containing the 39.5 ms pulsar PSR 1951 + 32, has been observed with the Position Sensitive Proportional Counter (PSPC) and the High Resolution Imager (HRI) aboard ROSAT. The HRI image, centered on the pulsar, is composed of a bright compact core of approximately 1 arcminute radius containing the pulsar and a compact nebula, as well as a diffuse nebula extending approximately 5 arcminutes eastward of the pulsar. The PSPC allowed us to model the spectra of the point source, the compact nebula and the 5 arcminute diffuse nebula. For a power-law spectrum with photon index Gamma approximately 2 and an interstellar column density of N(sub H) approximately 3 x 10(exp 21)/cm(exp 21) the derived luminosities are approximately 2.3 x 10(exp 33) d(sub 2.5)(exp 2) ergs/s from the pointlike source, approximately 3.9 x 10(exp 33) d(sup 2.5)(exp 2) ergs/s from the compact nebula, and approximately 1.8 x 10(exp 33) d(sub 2.5)(exp 2) ergs/s from the 5 arcminutes diffuse nebula. In addition, the 2 deg diameter circular field of view of the PSPC reveals a hard emission feature southeast of the pulsar with a conical geometry extending out to the edge of the detector. The spectrum from this region is well described by a two-temperature Raymond-Smith thermal plasma with an average temperature of approximately 10(exp 7) K and a luminosity of approximately 10(exp 34)d(sub 2.5)(exp 2) ergs/s. Pulsations from the 39.5 ms puslar, PSR 1951 + 32, are detected at the 99% confidence level. The implied pulsed fration is approximately 35% with a complicated energy-dependent behavior. The compact core and the extended diffuse nebula can be explained as synchrotron radiation from the relativistic pulsar wind confined by the ram pressure of the surrounding inhomgeneous medium. The conelike feature detected southeast of PSR 1951 + 32 is consistent with emission from an optically thin SNR in the radiative cooling phase of its evolution.

Safi-Harb, Samar↗

NASA NTRS2014

A High-Resolution X-Ray and Optical Study of SN1006: Asymmetric Expansion and Small-Scale Structure in a Type Ia Supernova Remnant

We introduce a deep (670 ks) X-ray survey of the entire SN 1006 remnant from the Chandra X-Ray Observatory, together with a deep Hα image of SN 1006 from the 4 m Blanco telescope at CTIO. Comparison with Chandra images from 2003 gives the first measurement of the X-ray proper motions around the entire periphery, carried out over a 9 yr baseline. We find that the expansion velocity varies significantly with azimuth. The highest velocity of approx.7400 km/s (almost 2.5 times that in the northwest (NW)) is found along the southeast (SE) periphery, where both the kinematics and the spectra indicate that most of the X-ray emission stems from ejecta that have been decelerated little, if at all. Asymmetries in the distribution of ejecta are seen on a variety of spatial scales. Si-rich ejecta are especially prominent in the SE quadrant, while O and Mg are more uniformly distributed, indicating large-scale asymmetries arising from the explosion itself. Neon emission is strongest in a sharp filament just behind the primary shock along the NWrim, where the pre-shock density is highest. Here the Ne is likely interstellar, while Ne within the shell may include a contribution from ejecta. Within the interior of the projected shell we find a few isolated "bullets" of what appear to be supernova ejecta that are immediately preceded by bowshocks seen in Hα, features that we interpret as ejecta knots that have reached relatively dense regions of the surrounding interstellar medium, but that appear in the interior in projection. Recent three-dimensional hydrodynamic models for Type Ia supernovae display small-scale features that strongly resemble the ones seen in X-rays in SN 1006; an origin in the explosion itself or from subsequent hydrodynamic instabilities both remain viable options. We have expanded the search for precursor X-ray emission ahead of a synchrotron-dominated shock front, as expected from diffusive shock acceleration theory, to numerous regions along both the northeast and southwest rims of the shell. Our data require that a precursor be thinner than about 3, and fainter than about 5% of the post-shock peak. These limits suggest that the magnetic field is amplified by a factor of seven or more in a narrow precursor region, promoting diffusive particle acceleration.

galaxies: active↗

NASA NTRS2018

Novel Applications of Focused Ion Beam Technique for Planetary Sample Analyses

We are using innovative FIB techniques to prepare samples of planetary materials for different types of coordinated analyses using ion microprobes, synchrotron beamlines, and specialized transmission electron microscopy (TEM) techniques. In these cases, the FIB sample preparation is the critical step in enabling these specialized analyses. We discuss several examples below utilizing the FEI Quanta3D instrument at the NASA Johnson Space Center. Trace element analyses utilizing synchrotron x-ray fluorescence. The trace element content of mineral grains in comet dust provides important clues on their formation and processing in the early solar system. We preformed coordinated analyses of a comet dust particle that had been prepared using ultramicrotomy for TEM analysis. Following the TEM analyses, we extracted a 70 nm thick section from a region of the carbon (C) film of the TEM grid, for additional analyses. A carbon ring ~2-3 μm thick was deposited on top of the C film using the FIB. The C film on the outer rim of the ring was milled away using various patterns to uniformly release the stresses on the film, preventing rupture and collapse, and was attached to the micromanipulator needle. We then isolated the ring completely and transferred the section to a silicon sample holder for analysis using the HXN (hard X-ray nanoprobe) beamline at NSLSII at Brookhaven National Lab. Coordinated Analyses of Presolar Grains. Rare sub-m presolar grains that originate in evolved stars and supernovae, occur in primitive astromaterials and are identified by their exotic isotopic compositions. Coordinated analyses of these grains using NanoSIMS, TEM, and other techniques on the same grain is enabled by innovative FIB sample preparation. In order to obtain subsequent isotopic analyses of Mg and Fe, contributions from surrounding grains were minimized. We precisely deposited a protective cap of Pt on top of the grain to preserve the grain of interest and then milled away about 5 μm diameter of the surrounding material. Following the isotopic analyses, the spindle was extracted and thinned to electron transparency for TEM microstructural analyses. In situ heating TEM experiments on lunar samples. We extracted a FIB thin section from Apollo 17 lunar rock 76015. To avoid ion-beam damage, e-beam deposition was used to deposit the first 500 nm of the C strap, followed by ion beam-assisted deposition of ~3 μm carbon. We performed an ex situ lift-out of the section and placed the section on one of the elements of a microelectromechanical systems (MEMS) - specialized heating substrate and attached the section to the substrate by depositing small C straps with the FIB. The heating chips utilize silicon nitride windows to support the samples and provide uniform heating while enabling TEM imaging. The heating chip was loaded into a Hitachi “Blaze” heating holder and analyzed using a Hitachi HF5000 at the University of Arizona.

Rahman, Z.↗