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All sources NASA NTRS DOE OSTI

DOE OSTI2020

Distributed Many-to-Many Protein Sequence Alignment using Sparse Matrices

Identifying similar protein sequences is a core step in many computational biology pipelines such as detection of homologous protein sequences, generation of similarity protein graphs for downstream analysis, functional annotation, and gene location. Performance and scalability of protein similarity search have proven to be a bottleneck in many bioinformatics pipelines due to increase in cheap and abundant sequencing data. This work presents a new distributed-memory software PASTIS. PASTIS relies on sparse matrix computations for efficient identification of possibly similar proteins. We use distributed sparse matrices for scalability and show that the sparse matrix infrastructure is a great fit for protein similarity search when coupled with a fully-distributed dictionary of sequences that allow remote sequence requests to be fulfilled. Our algorithm incorporates the unique bias in amino acid sequence substitution in search without altering basic sparse matrix model, and in turn, achieves ideal scaling up to millions of protein sequences.

97 MATHEMATICS AND COMPUTING↗

DOE OSTI2023

PacBio high‐throughput multi‐locus sequencing reveals high genetic diversity in mushroom‐forming fungi

Abstract Multi‐locus sequence data are widely used in fungal systematic and taxonomic studies to delimit species and infer evolutionary relationships. We developed and assessed the efficacy of a multi‐locus pooled sequencing method using PacBio long‐read high‐throughput sequencing. Samples included fresh and dried voucher specimens, cultures and archival DNA extracts of Agaricomycetes with an emphasis on the order Cantharellales. Of the 283 specimens sequenced, 93.6% successfully amplified at one or more loci with a mean of 3.3 loci amplified. Our method recovered multiple sequence variants representing alleles of rDNA loci and single copy protein‐coding genesrpb1,rpb2 andtef1. Within‐sample genetic variation differed by locus and taxonomic group, with the greatest genetic divergence observed among sequence variants ofrpb2 andtef1 from corticioid Cantharellales. Our method is a cost‐effective approach for generating accurate multi‐locus sequence data coupled with recovery of alleles from polymorphic samples and multi‐organism specimens. These results have important implications for understanding intra‐individual genomic variation among genetic loci commonly used in species delimitation of fungi.

Biochemistry & Molecular Biology↗

DOE OSTI2022

Evaluation of a parasite-density based pooled targeted amplicon deep sequencing (TADS) method for molecular surveillance of Plasmodium falciparum drug resistance genes in Haiti

Sequencing large numbers of individual samples is often needed for countrywide antimalarial drug resistance surveillance. Pooling DNA from several individual samples is an alternative cost and time saving approach for providing allele frequency (AF) estimates at a population level. Using 100 individual patient DNA samples of dried blood spots from a 2017 nationwide drug resistance surveillance study in Haiti, we compared codon coverage of drug resistance-conferring mutations in four Plasmodium falciparum genes ( crt , dhps , dhfr , and mdr1 ), for the same deep sequenced samples run individually and pooled. Samples with similar real-time PCR cycle threshold (Ct) values (+/- 1.0 Ct value) were combined with ten samples per pool. The sequencing success for samples in pools were higher at a lower parasite density than the individual samples sequence method. The median codon coverage for drug resistance-associated mutations in all four genes were greater than 3-fold higher in the pooled samples than in individual samples. The overall codon coverage distribution for pooled samples was wider than the individual samples. The sample pools with < 40 parasites/μL blood showed more discordance in AF calls for dhfr and mdr1 between the individual and pooled samples. This discordance in AF estimation may be due to low amounts of parasite DNA, which could lead to variable PCR amplification efficiencies. Grouping samples with an estimated ≥ 40 parasites/μL blood prior to pooling and deep sequencing yielded the expected population level AF. Pooling DNA samples based on estimates of > 40 parasites/μL prior to deep sequencing can be used for rapid genotyping of a large number of samples for these four genes and possibly other drug resistant markers in population-based studies. As Haiti is a low malaria transmission country with very few mixed infections and continued chloroquine sensitivity, the pooled sequencing approach can be used for routine national molecular surveillance of resistant parasites.

Louha, Swarnali (ORCID:0000000207778507)↗

DOE OSTI2022

UAE6 - Wind Tunnel Tests Data - UAE6 - Sequence K - Raw Data

Sequence K: Step AOA, Probes (P) This sequence was designed to quantify the 3-D blade static angle-of-attack response in the presence of rotational influences by varying the blade pitch angle. Sequence K used an upwind, rigid turbine with a 0° cone angle. The wind speeds ranged from 6 m/s to 20 m/s, and data were collected at yaw angles of 0° and 30°. The rotor rotated at 72 RPM. Blade and probe pressure measurements were collected. The teeter dampers were replaced with rigid links, and these two channels were flagged as not applicable by setting the measured values in the data file to -99999.99 Nm. The teeter link load cell was pre-tensioned to 40,000 N. The blade pitch angle ramped continuously at 0.18°/s over a wide range of increasing and decreasing pitch angles. A step sequence was also performed. The blade pitch was stepped 5°, the flow was allowed to stabilize, and the pitch angle was held for 8 seconds. Then the pitch angle step was repeated. Again, a wide range of pitch angles was obtained, both increasing and decreasing. The file lengths for this sequence varied from 96 seconds to 6 minutes, depending on the pitch angle range. Some short points were collected at 0° yaw and 3° pitch to verify the functionality of the instrumentation. The file name convention used the initial letter K, followed by two digits specifying wind speed, followed by two digits for yaw angle, followed by RU, RD, or ST, followed by the repetition digit. The angle-of-attack motion was differentiated by RU (ramp up), RD (ramp down), and ST (step down then step up). This sequence is related to sequences L and R.

17 WIND ENERGY↗

DOE OSTI2022

UAE6 - Wind Tunnel Tests Data - UAE6 - Sequence L - Raw Data

Sequence L: Step AOA, Parked (P) This sequence was designed to quantify the 3-D blade static angle-of-attack response in the absence of rotational influences by varying the blade pitch angle. This test sequence used an upwind, rigid turbine with a 0° cone angle. Wind speeds of 20 m/s and 30 m/s were used, and all data were collected at a yaw angle of 0°. The rotor was parked with the instrumented blade fixed at 0° azimuth, and the rotor lock was installed (see Appendix A). Blade and probe pressure measurements were collected. The teeter dampers were replaced with rigid links, and these two channels were flagged as not applicable by setting the measured values in the data file to -99999.99 Nm. The teeter link load cell was pre-tensioned to 40,000 N. The blade pitch angle ramped continuously at 0.18°/s over a wide range of increasing and decreasing pitch angles. A step sequence was also performed. The blade pitch was stepped 5°, the flow was allowed to stabilize, and the pitch angle was held for 8 seconds. Then the pitch angle step was repeated. Again, a wide range of pitch angles was obtained, both increasing and decreasing. The file lengths for this sequence varied from 5 to 10 minutes, depending on the pitch angle range. The file name convention used the initial letter L followed by two digits specifying wind speed, followed by 00 for yaw angle, followed by RU, RD, or ST, followed by the repetition digit. The angle-of-attack motion was differentiated by RU (ramp up), RD (ramp down), and ST (step down, then step up). This sequence is related to sequences K and R.

17 WIND ENERGY↗

DOE OSTI2024

Library Screening, In Vivo Confirmation, and Structural and Bioinformatic Analysis of Pentapeptide Sequences as Substrates for Protein Farnesyltransferase

Protein farnesylation is a post-translational modification where a 15-carbon farnesyl isoprenoid is appended to the C-terminal end of a protein by farnesyltransferase (FTase). This process often causes proteins to associate with the membrane and participate in signal transduction pathways. The most common substrates of FTase are proteins that have C-terminal tetrapeptide CaaX box sequences where the cysteine is the site of modification. However, recent work has shown that five amino acid sequences can also be recognized, including the pentapeptides CMIIM and CSLMQ. In this work, peptide libraries were initially used to systematically vary the residues in those two parental sequences using an assay based on Matrix Assisted Laser Desorption Ionization–Mass Spectrometry (MALDI-MS). In addition, 192 pentapeptide sequences from the human proteome were screened using that assay to discover additional extended CaaaX-box motifs. Selected hits from that screening effort were rescreened using an in vivo yeast reporter protein assay. The X-ray crystal structure of CMIIM bound to FTase was also solved, showing that the C-terminal tripeptide of that sequence interacted with the enzyme in a similar manner as the C-terminal tripeptide of CVVM, suggesting that the tripeptide comprises a common structural element for substrate recognition in both tetrapeptide and pentapeptide sequences. Molecular dynamics simulation of CMIIM bound to FTase further shed light on the molecular interactions involved, showing that a putative catalytically competent Zn(II)-thiolate species was able to form. Bioinformatic predictions of tetrapeptide (CaaX-box) reactivity correlated well with the reactivity of pentapeptides obtained from in vivo analysis, reinforcing the importance of the C-terminal tripeptide motif. This analysis provides a structural framework for understanding the reactivity of extended CaaaX-box motifs and a method that may be useful for predicting the reactivity of additional FTase substrates bearing CaaaX-box sequences.

59 BASIC BIOLOGICAL SCIENCES↗

NASA NTRS1991

Analysis of delay reducing and fuel saving sequencing and spacing algorithms for arrival traffic

The air traffic control subsystem that performs sequencing and spacing is discussed. The function of the sequencing and spacing algorithms is to automatically plan the most efficient landing order and to assign optimally spaced landing times to all arrivals. Several algorithms are described and their statistical performance is examined. Sequencing brings order to an arrival sequence for aircraft. First-come-first-served sequencing (FCFS) establishes a fair order, based on estimated times of arrival, and determines proper separations. Because of the randomness of the arriving traffic, gaps will remain in the sequence of aircraft. Delays are reduced by time-advancing the leading aircraft of each group while still preserving the FCFS order. Tightly spaced groups of aircraft remain with a mix of heavy and large aircraft. Spacing requirements differ for different types of aircraft trailing each other. Traffic is reordered slightly to take advantage of this spacing criterion, thus shortening the groups and reducing average delays. For heavy traffic, delays for different traffic samples vary widely, even when the same set of statistical parameters is used to produce each sample. This report supersedes NASA TM-102795 on the same subject. It includes a new method of time-advance as well as an efficient method of sequencing and spacing for two dependent runways.

Neuman, Frank↗

NASA NTRS1998

A Fast-Time Study of Aircraft Reordering in Arrival Sequencing and Scheduling

In order to ensure that the safe capacity of the terminal area is not exceeded, Air Traffic Management ATM often places restrictions on arriving flights transitioning from en route airspace to terminal airspace. This restriction of arrival traffic is commonly referred to as arrival flow management, and includes techniques such as metering, vectoring, fix-load balancing, and the imposition of miles-in-trail separations. These restrictions are enacted without regard for the relative priority which airlines may be placing on individual flights based on factors such as crew criticality, passenger connectivity, critical turn times, gate availability, on-time performance, fuel status, or runway preference. The development of new arrival flow management techniques which take into consideration priorities expressed by air carriers will likely reduce the economic impact of ATM restrictions on the airlines and lead to increased airline economic efficiency by allowing airlines to have greater control over their individual arrival banks of aircraft. NASA and the Federal Aviation Administration (FAA) have designed and developed a suite of software decision support tools (DSTs) collectively known as the Center TRACON Automation System (CTAS). One of these tools, the Traffic Management Advisor (TMA) is currently being used at the Fort Worth Air Route Traffic Control Center to perform arrival flow management of traffic into the Dallas/Fort Worth airport (DFW). The TMA is a time-based strategic planning tool that assists Traffic Management Coordinators (TMCs) and En Route Air Traffic Controllers in efficiently balancing arrival demand with airport capacity. The primary algorithm in the TMA is a real-time scheduler which generates efficient landing sequences and landing times for arrivals within about 200 no a. from touchdown. This scheduler will sequence aircraft so that they arrive in a first- come - first-served (FCFS) order. While FCFS sequencing establishes a fair order based on estimated times of arrival, it does not take into account individual airline priorities among incoming flights. NASA is exploring the possibility of allowing airlines to express relative arrival priorities to air traffic management through the development of new CTAS scheduling algorithms which take into consideration airline arrival preferences. The accommodation of airline priorities in arrival sequencing and scheduling would under most circumstances result in a deviation from a "natural" or FCFS arrival order. As a First step toward developing airline influenced sequencing algorithms, an investigation was conducted to determine the feasibility of reordering arrival traffic from a strict FCFS sequence. A fast-time simulation has been developed which allows statistical evaluation of sequencing and scheduling algorithms for arrival traffic at the Dallas/Fort Worth Airport. In contrast to real-time simulation or field tests, which would require on the order of ninety minutes to examine a single traffic rush period, the fast-time simulation allows examination of multiple rush periods in a matter of seconds.

Carr, Greg↗

NASA NTRS1997

Sequence information signal processor for local and global string comparisons

A sequence information signal processing integrated circuit chip designed to perform high speed calculation of a dynamic programming algorithm based upon the algorithm defined by Waterman and Smith. The signal processing chip of the present invention is designed to be a building block of a linear systolic array, the performance of which can be increased by connecting additional sequence information signal processing chips to the array. The chip provides a high speed, low cost linear array processor that can locate highly similar global sequences or segments thereof such as contiguous subsequences from two different DNA or protein sequences. The chip is implemented in a preferred embodiment using CMOS VLSI technology to provide the equivalent of about 400,000 transistors or 100,000 gates. Each chip provides 16 processing elements, and is designed to provide 16 bit, two's compliment operation for maximum score precision of between -32,768 and +32,767. It is designed to provide a comparison between sequences as long as 4,194,304 elements without external software and between sequences of unlimited numbers of elements with the aid of external software. Each sequence can be assigned different deletion and insertion weight functions. Each processor is provided with a similarity measure device which is independently variable. Thus, each processor can contribute to maximum value score calculation using a different similarity measure.

Peterson, John C.↗

NASA NTRS2007

Golden Ratio Versus Pi as Random Sequence Sources for Monte Carlo Integration

We discuss here the relative merits of these numbers as possible random sequence sources. The quality of these sequences is not judged directly based on the outcome of all known tests for the randomness of a sequence. Instead, it is determined implicitly by the accuracy of the Monte Carlo integration in a statistical sense. Since our main motive of using a random sequence is to solve real world problems, it is more desirable if we compare the quality of the sequences based on their performances for these problems in terms of quality/accuracy of the output. We also compare these sources against those generated by a popular pseudo-random generator, viz., the Matlab rand and the quasi-random generator ha/ton both in terms of error and time complexity. Our study demonstrates that consecutive blocks of digits of each of these numbers produce a good random sequence source. It is observed that randomly chosen blocks of digits do not have any remarkable advantage over consecutive blocks for the accuracy of the Monte Carlo integration. Also, it reveals that pi is a better source of a random sequence than theta when the accuracy of the integration is concerned.

Sen, S. K.↗

NASA NTRS2010

Reactive Sequencing for Autonomous Navigation Evolving from Phoenix Entry, Descent, and Landing

Virtual Machine Language (VML) is an award-winning advanced procedural sequencing language in use on NASA deep-space missions since 1997, and was used for the successful entry, descent, and landing (EDL) of the Phoenix spacecraft onto the surface of Mars. Phoenix EDL utilized a state-oriented operations architecture which executed within the constraints of the existing VML 2.0 flight capability, compatible with the linear "land or die" nature of the mission. The intricacies of Phoenix EDL included the planned discarding of portions of the vehicle, the complex communications management for relay through on-orbit assets, the presence of temporally indeterminate physical events, and the need to rapidly catch up four days of sequencing should a reboot of the spacecraft flight computer occur shortly before atmospheric entry. These formidable operational challenges led to new techniques for packaging and coordinating reusable sequences called blocks using one-way synchronization via VML sequencing global variable events. The coordinated blocks acted as an ensemble to land the spacecraft, while individually managing various elements in as simple a fashion as possible. This paper outlines prototype VML 2.1 flight capabilities that have evolved from the one-way synchronization techniques in order to implement even more ambitious autonomous mission capabilities. Target missions for these new capabilities include autonomous touch-and-go sampling of cometary and asteroidal bodies, lunar landing of robotic missions, and ultimately landing of crewed lunar vehicles. Close proximity guidance, navigation, and control operations, on-orbit rendezvous, and descent and landing events featured in these missions require elaborate abort capability, manifesting highly non-linear scenarios that are so complex as to overtax traditional sequencing, or even the sort of one-way coordinated sequencing used during EDL. Foreseeing advanced command and control needs for small body and lunar landing guidance, navigation and control scenarios, work began three years ago on substantial upgrades to VML that are now being exercised in scenarios for lunar landing and comet/asteroid rendezvous. The advanced state-based approach includes coordinated state transition machines with distributed decision-making logic. These state machines are not merely sequences - they are reactive logic constructs capable of autonomous decision making within a well-defined domain. Combined with the JPL's AutoNav software used on Deep Space 1 and Deep Impact, the system allows spacecraft to autonomously navigate to an unmapped surface, soft-contact, and either land or ascend. The state machine architecture enabled by VML 2.1 has successfully performed sampling missions and lunar descent missions in a simulated environment, and is progressing toward flight capability. The authors are also investigating using the VML 2.1 flight director architecture to perform autonomous activities like rendezvous with a passive hypothetical Mars sample return capsule. The approach being pursued is similar to the touch-and-go sampling state machines, with the added complications associated with the search for, physical capture of, and securing of a separate spacecraft. Complications include optically finding and tracking the Orbiting Sample Capsule (OSC), keeping the OSC illuminated, making orbital adjustments, and physically capturing the OSC. Other applications could include autonomous science collection and fault compensation.

asteroid↗

DOE OSTI2024

LevSeq: Rapid Generation of Sequence-Function Data for Directed Evolution and Machine Learning

Sequence-function data provides valuable information about the protein functional landscape but is rarely obtained during directed evolution campaigns. Here, we present Long-read every variant Sequencing (LevSeq), a pipeline that combines a dual barcoding strategy with nanopore sequencing to rapidly generate sequence-function data for entire protein-coding genes. LevSeq integrates into existing protein engineering workflows and comes with open-source software for data analysis and visualization. The pipeline facilitates data-driven protein engineering by consolidating sequence-function data to inform directed evolution and provide the requisite data for machine learning-guided protein engineering (MLPE). LevSeq enables quality control of mutagenesis libraries prior to screening, which reduces time and resource costs. Simulation studies demonstrate LevSeq’s ability to accurately detect variants under various experimental conditions. Lastly, we show LevSeq’s utility in engineering protoglobins for new-to-nature chemistry. Widespread adoption of LevSeq and sharing of the data will enhance our understanding of protein sequence-function landscapes and empower data-driven directed evolution.

59 BASIC BIOLOGICAL SCIENCES↗

NASA NTRS1992

Long-range correlations in nucleotide sequences

DNA sequences have been analysed using models, such as an n-step Markov chain, that incorporate the possibility of short-range nucleotide correlations. We propose here a method for studying the stochastic properties of nucleotide sequences by constructing a 1:1 map of the nucleotide sequence onto a walk, which we term a 'DNA walk'. We then use the mapping to provide a quantitative measure of the correlation between nucleotides over long distances along the DNA chain. Thus we uncover in the nucleotide sequence a remarkably long-range power law correlation that implies a new scale-invariant property of DNA. We find such long-range correlations in intron-containing genes and in nontranscribed regulatory DNA sequences, but not in complementary DNA sequences or intron-less genes.

NASA Discipline Cardiopulmonary↗

DOE OSTI2022

An improved process for the release of synthetic DNA sequences from a solid-phase capture support

Here, to facilitate the solid-phase purification of synthetic DNA sequences, a riboside phosphoramidite, carrying a 5-O-capture linker and a 2-O-silyl ether protecting group, is incorporated into a DNA sequence during its last solid-phase synthesis cycle. After deprotection and release of the DNA sequence from the synthesis support, the sequence is then covalently linked to a capture support to enable the removal of shorter unbound DNA sequences by simply washing these off the support. The solid-phase purified DNA sequence is then released from the capture support, through an innovative intramolecular cyclodeesterification of its terminal riboside ethyl phosphate triester entity and is isolated in a yield of 94% while displaying an exquisite purity of 97%.

59 BASIC BIOLOGICAL SCIENCES↗

DOE OSTI2022

Supplemental Material: Cretaceous sequence stratigraphy of the northern Baltimore Canyon Trough: Implications for basin evolution and carbon storage

We focus on potential reservoirs in the Logan Canyon Formation. Based on lithostratigraphy, Libby-French originally divided the Logan Canyon sandstones into lower and upper Logan Canyon sandstone units separated by the Sable Shale equivalent. Miller et al. reinterpreted the well-log correlations with biostratigraphy using a sequence stratigraphic approach and found three distinct Logan Canyon highstand sandstones associated with three Aptian to lower Cenomanian stratigraphic sequences, the LC3, LC2, and LC1, respectively. In addition, Miller et al. found that the Sable Shale Formation identified by Libby-French was placed above and below the LC1 basal sequence boundary in some wells, highlighting issues with correlating units based only on lithology. The Upper Cretaceous strata in the BCT are termed the Dawson Canyon Equivalent Formation, correlate to the DCx composite sequence, and cap the Logan Canyon sequences below made up of a very thick, calcareous Cretaceous sequence stratigraphy mudstone, divided by a single, thick, laterally continuous Coniacian to Campanian sandstone called the Middle Sandstone.

58 GEOSCIENCES↗

DOE OSTI2020

Fluorescent amplification for next generation sequencing (FA-NGS) library preparation

BACKGROUND: Next generation sequencing (NGS) has become a universal practice in modern molecular biology. As the throughput of sequencing experiments increases, the preparation of conventional multiplexed libraries becomes more labor intensive. Conventional library preparation typically requires quality control (QC) testing for individual libraries such as amplification success evaluation and quantification, none of which occur until the end of the library preparation process. RESULTS: In this study, we address the need for a more streamlined high-throughput NGS workflow by tethering real-time quantitative PCR (qPCR) to conventional workflows to save time and implement single tube and single reagent QC. We modified two distinct library preparation workflows by replacing PCR and quantification with qPCR using SYBR Green I. qPCR enabled individual library quantification for pooling in a single tube without the need for additional reagents. Additionally, a melting curve analysis was implemented as an intermediate QC test to confirm successful amplification. Sequencing analysis showed comparable percent reads for each indexed library, demonstrating that pooling calculations based on qPCR allow for an even representation of sequencing reads. To aid the modified workflow, a software toolkit was developed and used to generate pooling instructions and analyze qPCR and melting curve data. CONCLUSIONS: We successfully applied fluorescent amplification for next generation sequencing (FA-NGS) library preparation to both plasmids and bacterial genomes. As a result of using qPCR for quantification and proceeding directly to library pooling, the modified library preparation workflow has fewer overall steps. Therefore, we speculate that the FA-NGS workflow has less risk of user error. The melting curve analysis provides the necessary QC test to identify and troubleshoot library failures prior to sequencing. While this study demonstrates the value of FA-NGS for plasmid or gDNA libraries, we speculate that its versatility could lead to successful application across other library types.

59 BASIC BIOLOGICAL SCIENCES↗

DOE OSTI2020

Fine Structures in the Main Sequence Revealed by Gaia Data Release 2

The Hertzsprung–Russell diagram (HRD) is fully examined using the Fourier analysis. This work shows more stars are above the gap in the lower main sequence than below it, and this implies that stars spend more time above the gap while they undergo variability associated with the {sup 3}He instability. The enhanced HRD also shows the width of the gap is not linear and depends on the G{sub BP}−G{sub RP} color up until G{sub BP}−G{sub RP}=2.7. Beyond this color limit, the gap is hardly seen. Besides, a new low density region is revealed for the first time centered at M {sub G} ≈ 10.7 and G {sub BP} − G {sub RP} ≈ 2.8, which is below the lower right corner of the gap. This work also shows that the main sequence appears to have fine stripes where stellar densities are relatively low or high compared to their adjacent regions on the main sequence. These stripes can be seen throughout the main sequence of stars redder than G {sub BP} − G {sub RP} = 0.8 and are not limited to any specific color or spectral type. Slopes of these features are different from the main sequence, but are pretty consistent throughout the main sequence, with a few exceptions. We are perplexed by these new features, but the complexities of stellar atmospheric features and opacities of dwarfs may have caused these patterns.

79 ASTRONOMY AND ASTROPHYSICS↗

NASA NTRS2015

Sequencing to Station in 12 Months (Targeting Orbital 5 Launch, March 30th)

The Biomolecule Sequencer is a Commercial Off-The-Shelf device developed by Oxford Nanopore Technologies and implements a method of DNA sequencing unlike any other current sequencers. The device measures changes in electrical current through a nanopore depending on the sequence of the DNA strand that is passing through it. Since the technology is built on nanometer-scale ion pores, the hardware itself is exceptionally small (3 x 1 x 58 inches), lightweight (less than 120 grams with USB cable), and powered only by a USB connection. The sequencing device is permanent, while the flow cells, to which the samples are added, are periodically replaced. The goal of our upcoming technology demonstration on ISS is to provide evidence that DNA sequencing in space is possible, which holds the exciting potential to enable the identification of microorganisms, monitor changes in microbes and humans in response to spaceflight, and possibly aid in the detection of DNA-based life elsewhere in the universe.

microorganisms↗