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Results for “indirect detection”

Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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At least 145 records · Page 8
All sourcesNASA NTRSDOE OSTI
DOE OSTI2020

Direct determination of momentum-resolved electron transfer in the photoexcited van der Waals heterobilayer WS 2 /MoS 2

Photoinduced charge separation in transition-metal dichalcogenide heterobilayers is being explored for moiré excitons, spin-valley polarization, and quantum phases of excitons/electrons. While different momentum points can be critically involved in charge separation dynamics, little is known directly from experiments. Here we determine momentum-resolved electron dynamics in the WS 2 /MoS 2 heterobilayer using time- and angle-resolved photoemission spectroscopy. Upon photoexcitation in the $\textit{K}$ valleys, we detect electrons in $\textit{M/2}$, $\textit{M}$, and $\textit{Q}$ valleys/points on timescales as short as ~70 fs, followed by dynamic equilibration in K and Q valleys in ~400 fs. Overall, these findings reveal the essential role of phonon scattering, the coexistence of direct and indirect interlayer excitons, and constraints on spin-valley polarization.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗
DOE OSTI2020

Effects of social structure and management on risk of disease establishment in wild pigs

Contact heterogeneity among hosts determines invasion and spreading dynamics of infectious disease, thus its characterization is essential for identifying effective disease control strategies. Yet, little is known about the factors shaping contact networks in many 28 wildlife species and how wildlife management actions might affect contact networks. Wild pigs in North America are an invasive, socially-structured species that pose a health concern for domestic swine given their ability to transmit numerous devastating diseases 2 such as African swine fever (ASF). Using proximity loggers and GPS data from 48 wild pigs in Florida and South Carolina, USA, we employed a probabilistic framework to estimate weighted contact networks. We determined the effects of sex, social group, and spatial distribution (monthly home range overlap and distance) on wild pig contact. We also estimated the impacts of management-induced perturbations on contact and inferred their effects on ASF establishment in wild pigs with simulation. Social group membership was the primary factor influencing contacts. Between-group contacts depended primarily on space use characteristics, with fewer contacts among groups separated by >2 km and no contacts among groups >4 km apart within a month. Modeling ASF dynamics on the contact network demonstrated that indirect contacts resulting from baiting (a typical method of attracting wild pigs or game species to a site to enhance recreational hunting) increased the risk of disease establishment by ~33% relative to direct contact. Low-intensity population reduction (<5.9% of the population) had no detectable impact on contact structure but reduced predicted ASF establishment risk relative to no population reduction. Here, we demonstrate an approach for understanding the relative role of spatial, social, and individual-level characteristics in shaping contact networks and predicting their effects on disease establishment risk, thus providing insight for optimizing disease control in spatially- and socially-structured wildlife species.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2025

Optimizing TinyTPC Test Stand for Low Energy Event Reconstruction

Introducing dopants into liquid argon offers a promising avenue to enhance the sensitivity and performance of LAr detectors such as DUNE. To explore this opportunity, we are optimizing and deploying the TinyTPC test stand, a compact time projection chamber with LArPix readout to study the effects of photosensitive dopants on the charge detected. TinyTPC enables comparative measurements of low-energy responses under various operational configurations and provides a platform to study the behavior of pixel readouts at low energy. We ensured system reliability through continuous current and voltage monitoring, modeling the detector's electrical behavior, and indirectly estimating total resistance under testing conditions. We ran the Blanche cryostat under various thresholds and gain configurations to evaluate their potential impact to low-energy event reconstruction and advancing R&D efforts for dopant integration in neutrino detectors

Van Loenen, Drew [Franciscan U. Steubenville]↗
DOE OSTI2025

When can we detect lianas from space? Toward a mechanistic understanding of liana‐infested forest optics

Abstract Lianas, woody vines acting as structural parasites of trees, have profound effects on the composition and structure of tropical forests, impacting tree growth, mortality, and forest succession. Remote sensing could offer a powerful tool for quantifying the scale of liana infestation, provided the availability of robust detection methods. We analyze the consistency and global geographic specificity of spectral signals—reflectance across wavelengths—from liana‐infested tree crowns and forest stands, examining the underlying mechanisms of these signals. We compiled a uniquely comprehensive database, including leaf reflectance spectra from 5424 leaves, fine‐scale airborne reflectance data from 999 liana‐infested canopies, and coarse‐scale satellite reflectance data covering 775 ha of liana‐infested forest stands. To unravel the mechanisms of the liana spectral signal, we applied mechanistic radiative transfer models across scales, establishing a synthesis of the relative importance of different mechanisms, which we corroborate with field data on liana leaf chemistry and canopy structure. We find a consistent liana spectral signal at canopy and stand scales across globally distributed sites. This signature mainly arises at the canopy level due to direct effects of more horizontal leaf angles, resulting in a larger projected leaf area, and indirect effects from increased light scattering in the near and short‐wave infrared regions, linked to lianas' less costly leaf construction compared with trees on average. The existence of a consistent global spectral signal for lianas suggests that large‐scale quantification of liana infestation is feasible. However, because the traits responsible for the liana canopy‐reflectance signal are not exclusive to lianas, accurate large‐scale detection requires rigorously validated remote sensing methods. Our models highlight challenges in automated detection, such as potential misidentification due to leaf phenology, tree life history, topography, and climate, especially where the scale of liana infestation is less than a single remote sensing pixel. The observed cross‐site patterns also prompt ecological questions about lianas' adaptive similarities in optical traits across environments, indicating possible convergent evolution due to shared constraints on leaf biochemical and structural traits.

Environmental Sciences & Ecology↗
DOE OSTI2023

The direct and indirect drivers shaping RNA viral communities in grassland soil

Recent studies have revealed diverse RNA viral communities in soils. Yet, how environmental factors influence soil RNA viruses remains largely unknown. Here, we recovered RNA viral communities from 24 metatranscriptomes sequenced from grassland soils managed under a range of environmental conditions including 1) water content: 100% and 25% water holding capacity, 2) plant presence: planted with tall wheatgrass (Thinopyrum ponticum) and bare soil, 3) cultivar type: Alkar and Jose, and 4) soil depth: 0-5 cm and 15-25 cm. The recovered RNA viral communities were novel with nearly one-third of the RNA viral contigs uniquely detected in the studied grassland. The classified RNA viral contigs are mostly known as eukaryotic RNA viruses (74.7%) belonging to Phyla Duplornaviricota, Kitrinoviricota, Lenarviricota, and Pisuviricota. Eukaryotic RNA viruses of Family Mitoviridae as well as their natural hosts, Fungi, are one of the most dominant taxa. Consistent with the results of nonmetric multidimensional scaling analysis, the four environmental conditions (water content, plant presence, cultivar, and soil depth) significantly influence the assemblages of soil RNA viral communities as suggested by the correlation analysis and the random forest algorithm. The modularity analysis of the factor network and the structural equation modeling further support the hierarchical associations among the four environmental factors and the community factors representing the co-existing eukaryotic, prokaryotic, and RNA viral communities. The soil water content, plant presence, and type of cultivar demonstrate a significant positive impact on eukaryotic RNA viral richness directly as well as indirectly on eukaryotic RNA viral abundance via influencing the co-existing eukaryotic members in this soil. Our data also provide statistical support for the negative influence of soil depth on soil eukaryotic richness and abundances resulting in its indirect impact on soil eukaryotic RNA viral communities. This study provides field-relevant information on how environmental and community factors collectively shape soil RNA communities and contribute to ecological understanding of RNA viral survival under various environmental conditions and virus-host interactions in soil.

Wu, Ruonan↗
DOE OSTI2022

Shipping regulations lead to large reduction in cloud perturbations

Global shipping accounts for 13% of global emissions of SO2, which, once oxidized to sulfate aerosol, acts to cool the planet both directly by scattering sunlight and indirectly by increasing the albedo of clouds. This cooling due to sulfate aerosol offsets some of the warming effect of greenhouse gasses and is the largest uncertainty in determining the change in the Earth’s radiative balance by human activity. Ship tracks—the visible manifestation of the indirect of effect of ship emissions on clouds as quasi-linear features—have long provided an opportunity to quantify these effects. However, they have been arduous to catalog and typically studied only in particular regions for short periods of time. Using a machine-learning algorithm to automate their detection we catalog more than 1 million ship tracks to provide a global climatology. We use this to investigate the effect of stringent fuel regulations introduced by the International Maritime Organization in 2020 on their global prevalence since then, while accounting for the disruption in global commerce caused by COVID-19. We find a marked, but clearly nonlinear, decline in ship tracks globally: An 80% reduction in SO x emissions causes only a 25% reduction in the number of tracks detected.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2024

Broadband Rotational Spectroscopy in Uniform Supersonic Flows: Chirped Pulse/Uniform Flow for Reaction Dynamics and Low Temperature Kinetics

ConspectusThe study of gas-phase chemical reactions at very low temperatures first became possible with the development and implementation of the CRESU (French acronym for Reaction Kinetics in Uniform Supersonic Flows) technique. CRESU relies on a uniform supersonic flow produced by expansion of a gas through a Laval (convergent-divergent) nozzle to produce a wall-less reactor at temperatures from 10 to 200 K and densities of 1016-1018 cm-3 for the study of low temperature kinetics, with particular application to astrochemistry. In recent years, we have combined uniform flows with revolutionary advances in broadband rotational spectroscopy to yield an instrument that affords near-universal detection for novel applications in photodissociation, reaction dynamics, and kinetics. This combination of uniform supersonic flows with chirped-pulse Fourier-transform microwave spectroscopy (Chirped-Pulse/Uniform Flow, CPUF) permits detection of any species with a modest dipole moment, thermalized to the uniform temperature of the gas flow, with isomer, conformer, and vibrational state specificity. In addition, the use of broadband, high-resolution, and time-dependent (microsecond time scale) micro- and mm-wave spectroscopy makes it an ideal tool for characterizing both transient and stable molecules, as well as studying their spectroscopy and dynamics.In this Account, we review recent advances made using the CPUF technique, including studies of photodissociation, radical-radical reaction dynamics, and low temperature kinetics. These studies highlight both the strength of universal and multiplexed detection and the challenges of coupling it to a high-density collisional environment. Product branching and product evolution as a function of time have been measured for astrochemically relevant systems, relying on the detailed characterization of these flow conditions via experiments and fluid dynamics simulations. In the photodissociation of isoxazole, an unusual heterocyclic molecule with a very low-energy conical intersection, we have identified 7 products in 5 reaction channels and determined the product branching, pointing to both direct and indirect pathways. We have also approached the same system from separated NO and C3H3 reactants to explore a broader range of the potential energy surface, demonstrating the power of multichannel branching measurements for complex radical-radical reactions. We determined the product branching in the C3H2 isomers in the photodissociation of the propargyl radical and identified the importance of a hydrogen atom catalyzed isomerization to the lowest energy cyclic form. This then motivated a study of direct D-H exchange reaction in radicals, in which we demonstrate that it is an important and overlooked pathway for deuterium fractionation in astrochemical environments. Recently, we have shown the measurement of low temperature kinetics inside an extended Laval nozzle, after which a shock-free secondary expansion to low temperature and density affords an ideal environment for detection by rotational spectroscopy. These results highlight the power and potential of the CPUF approach, and future prospects will also be discussed in light of these developments.

Dias, Nureshan↗
DOE OSTI2025

Evaluating the Potential to Constrain Dark Matter Annihilation with Fermi-LAT Observations of Ultrafaint Compact Stellar Systems

Recent results from numerical simulations and models of galaxy formation suggest that recently discovered ultrafaint compact stellar systems (UFCSs) in the halo of the Milky Way (MW) may be some of the smallest and faintest galaxies. If this is the case, these systems would be attractive targets for indirect searches of weakly interacting massive particle dark matter (DM) annihilation due to their relative proximity and high expected DM content. In this study, we analyze 14.3 yr of γ-ray data collected by the Fermi-Large Area Telescope coincident with 26 UFCSs. No significant excess γ-ray emission is detected, and we present γ-ray flux upper limits for these systems. Assuming that the UFCSs are DM-dominated galaxies consistent with being among the faintest and least massive MW dwarf spheroidal (dSph) satellite galaxies, we derive the projected sensitivity for a DM annihilation signal. We find that observations of UFCSs have the potential to yield some of the most powerful constraints on DM annihilation, with sensitivity comparable to observations of known dSphs and the Galactic center. This result emphasizes the importance of precise kinematic studies of UFCSs to empirically determine their DM content.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2021

EFT at FASERν

We investigate the sensitivity of the FASERv detector to new physics in the form of non-standard neutrino interactions. FASERv which will be installed 480 m downstream of the ATLAS interaction point, will for the first time study interactions of multi-TeV neutrinos from a controlled source. Our formalism — which is applicable to any current and future neutrino experiment — is based on the Standard Model Effective Theory (SMEFT) and its counterpart, Weak Effective Field Theory (WEFT), below the electroweak scale. Starting from the WEFT Lagrangian, we compute the coefficients that modify neutrino production in meson decays and detection via deep-inelastic scattering, and we express the new physics effects in terms of modified flavor transition probabilities. For some coupling structures, we find that FASERv will be able to constrain interactions that are two to three orders of magnitude weaker than Standard Model weak interactions, implying that the experiment will be indirectly probing new physics at the multi-TeV scale. In some cases, FASERv constraints will become comparable to existing limits — some of them derived for the first time in this paper — already with 150 fb -1 of data.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗
DOE OSTI2021

Galactic Potential and Dark Matter Density from Angular Stellar Accelerations

Here, we present an approach to measure the Milky Way (MW) potential using the angular accelerations of stars in aggregate as measured by astrometric surveys like Gaia. Accelerations directly probe the gradient of the MW potential, as opposed to indirect methods using, e.g., stellar velocities. We show that end-of-mission Gaia stellar acceleration data may be used to measure the potential of the MW disk at approximately 3σ significance and, if recent measurements of the solar acceleration are included, the local dark matter density at ~2σ significance. Since the significance of detection scales steeply as t 5/2 for observing time t, future surveys that include angular accelerations in the astrometric solutions may be combined with Gaia to precisely measure the local dark matter density and shape of the density profile.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2021

Probing the galaxy–halo connection with total satellite luminosity

ABSTRACT We demonstrate how the total luminosity in satellite galaxies is a powerful probe of dark matter haloes around central galaxies. The method cross-correlates central galaxies in spectroscopic galaxy samples with fainter galaxies detected in photometric surveys. Using models, we show that the total galaxy luminosity, Lsat, scales linearly with host halo mass, making Lsat an excellent proxy for Mh. Lsat is also sensitive to the formation time of the halo. We demonstrate that probes of galaxy large-scale environment can break this degeneracy. Although this is an indirect probe of the halo, it yields a high signal-to-noise ratio measurement for galaxies expected to occupy haloes at <1012 M⊙, where other methods suffer from larger errors. In this paper, we focus on observational and theoretical systematics in the Lsat method. We test the robustness of our method of finding central galaxies and our methods of estimating the number of background galaxies. We implement this method on galaxies in the Sloan Digital Sky Survey (SDSS) data, with satellites identified in fainter imaging data. We find excellent agreement between our theoretical predictions and the observational measurements. Finally, we compare our Lsat measurements to weak lensing estimates of Mh for red and blue subsamples. In the stellar mass range where the measurements overlap, we find consistent results, where red galaxies live in larger haloes. However, the Lsat approach allows us to probe significantly lower mass galaxies. At these masses, the Lsat values are equivalent. This example shows the potential of Lsat as a probe of dark haloes.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2021

Assessing the sources of reionization: a spectroscopic case study of a 30× lensed galaxy at z ~ 5 with Ly α , C IV, Mg ιι, and [Ne ιιι]

We present a detailed spectroscopic analysis of a galaxy at z ≃ 4.88 that is, by chance, magnified ~30× by gravitational lensing. Only three sources at z ≳ 5 are known with such high magnification. This particular source has been shown to exhibit widespread, high equivalent width ${{\rm C\, \small {IV}}}\ \lambda 1549\, \mathring{\rm A}$ emission, implying it is a unique example of a metal-poor galaxy with a hard radiation field, likely representing the galaxy population responsible for cosmic reionization. Using ultraviolet (UV) nebular line ratio diagnostics, Very Large Telescope (VLT)/X-shooter observations rule out strong active galactic nuclei (AGN) activity, indicating a stellar origin of the hard radiation field instead. We present a new detection of ${[{\rm Ne\, \small {III}}]}\ \lambda 3870\, \mathring{\rm A}$ and use the [${\rm Ne\, \small {III}}$]/[${\rm O\, \small {II}}$] line ratio to constrain the ionization parameter and gas-phase metallicity. Closely related to the commonly used [${\rm O\, \small {III}}$]/[${\rm O\, \small {II}}$] ratio, our [${\rm Ne\, \small {III}}$]/[${\rm O\, \small {II}}$] measurement shows this source is similar to local ‘Green Pea’ galaxies and Lyman-continuum leakers. It furthermore suggests this galaxy is more metal poor than expected from the fundamental metallicity relation, possibly as a consequence of excess gas accretion diluting the metallicity. Finally, we present the highest redshift detection of ${{\rm Mg\, \small {II}}}\ \lambda 2796\, \mathring{\rm A}$, observed at high equivalent width in emission, in contrast to more evolved systems predominantly exhibiting ${\rm Mg\, \small {II}}$ absorption. Strong ${\rm Mg\, \small {II}}$ emission has been observed in most z ~ 0 Lyman-continuum leakers known and has recently been proposed as an indirect tracer of escaping ionizing radiation. In conclusion, this strongly lensed galaxy, observed just $300\, \mathrm{Myr}$ after reionization ends, enables testing of observational diagnostics proposed to constrain the physical properties of distant galaxies in the James Webb Space Telescope (JWST)/Extremely Large Telescope (ELT) era.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2024

Potential applications of microbial genomics in nuclear non-proliferation

As nuclear technology evolves in response to increased demand for diversification and decarbonization of the energy sector, new and innovative approaches are needed to effectively identify and deter the proliferation of nuclear arms, while ensuring safe development of global nuclear energy resources. Preventing the use of nuclear material and technology for unsanctioned development of nuclear weapons has been a long-standing challenge for the International Atomic Energy Agency and signatories of the Treaty on the Non-Proliferation of Nuclear Weapons. Environmental swipe sampling has proven to be an effective technique for characterizing clandestine proliferation activities within and around known locations of nuclear facilities and sites. However, limited tools and techniques exist for detecting nuclear proliferation in unknown locations beyond the boundaries of declared nuclear fuel cycle facilities, representing a critical gap in non-proliferation safeguards. Microbiomes, defined as “characteristic communities of microorganisms” found in specific habitats with distinct physical and chemical properties, can provide valuable information about the conditions and activities occurring in the surrounding environment. Microorganisms are known to inhabit radionuclide-contaminated sites, spent nuclear fuel storage pools, and cooling systems of water-cooled nuclear reactors, where they can cause radionuclide migration and corrosion of critical structures. Microbial transformation of radionuclides is a well-established process that has been documented in numerous field and laboratory studies. These studies helped to identify key bacterial taxa and microbially-mediated processes that directly and indirectly control the transformation, mobility, and fate of radionuclides in the environment. Expanding on this work, other studies have used microbial genomics integrated with machine learning models to successfully monitor and predict the occurrence of heavy metals, radionuclides, and other process wastes in the environment, indicating the potential role of nuclear activities in shaping microbial community structure and function. Results of this previous body of work suggest fundamental geochemical-microbial interactions occurring at nuclear fuel cycle facilities could give rise to microbiomes that are characteristic of nuclear activities. These microbiomes could provide valuable information for monitoring nuclear fuel cycle facilities, planning environmental sampling campaigns, and developing biosensor technology for the detection of undisclosed fuel cycle activities and proliferation concerns.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2026

Study on Application of Distributed Network of Sensors with List Mode for NMAC Literature Review

Nuclear material accounting and control (NMAC) for nuclear security detects, deters, and resolves questions related to unauthorized removal (i.e. theft) or misuse of nuclear material. NMAC also serves as a key insider threat mitigation measure and aids in recovery of nuclear material that is missing. Effective nuclear security depends on NMAC for timely and accurate information about nuclear material types, quantities, and locations. Bulk nuclear material processing facilities, however, present unique challenges for effective NMAC due to the presence of large quantities of material in-process and the accumulation of residual material holdup within process equipment. These holdup accumulations can obscure accurate physical inventory taking and complicate efforts to resolve NMAC irregularities at the facility level. Bulk material monitoring systems often rely on material balance calculations and indirect measurement techniques, which may mask protracted theft of smaller amounts of nuclear material. These monitoring limitations have generated increased interest in continuous monitoring technologies, including distributed non-destructive assay (NDA) sensor networks capable of providing real-time or near-real-time measurement of material movement and accumulation within bulk processing environments. Recent advancements in distributed networks of NDA radiation detectors and sensing technologies provide an opportunity to address these limitations. Although such distributed sensor networks have been implemented in select facilities for IAEA Safeguards applications, their potential for supporting NMAC functions specifically tailored to nuclear security objectives remains largely unexplored. Furthermore, emerging list-mode data acquisition technologies have reached high technology readiness levels, enabling time-correlated detection of nuclear events across multiple temporal scales. These capabilities provide enhanced opportunities for accurate holdup measurement, continuous process monitoring, and improved detection of material theft or misuse over time. The increasing global expansion of civil nuclear power and development of related bulk material processing facilities, including those supporting high-assay low-enriched uranium (HALEU) and other advanced reactor fuel fabrication, further increases the need for advanced measurement and monitoring strategies for NMAC.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗
DOE OSTI2025

Impact of nutritional history, prey quality, and quantity on grazing and photophysiological responses in the mixoplanktonic dinoflagellate Karenia brevis

The mixotrophic toxic dinoflagellate Karenia brevis forms red tides almost annually along Florida's Gulf coast. We hypothesize that the nutritional status and abundance of its prey, the picocyanobacterium Synechococcus , will affect its feeding rates and growth responses, with implications for bloom dynamics. This study investigated how prey nutritional quality and quantity (absolute and relative) impact grazing rates by K. brevis initially exponentially growing and in nitrogen (N)-limited conditions, and how grazing, in turn, affects the photophysiological responses of predator and prey. Prey quality was manipulated by providing Synechococcus grown under different ratios of N : phosphorus (P). Synechococcus quality did not significantly affect ingestion rates (measured as prey death rate) but grazing rates increased with increasing prey : grazer ratios (R 2 = 0.7). Compared to control, the growth of exponentially growing grazers doubled when Synechococcus was provided, whereas there was no growth enhancement when Synechococcus of varying qualities was provided to N-limited, chemostat-seeded grazers. Despite this doubled growth, 15 N labeling of the prey and nanoscale secondary ion mass spectrometry (nanoSIMS) detected low Synechococcus -N transfer into grazer biomass after 3 d (< 1% on a cell basis). This suggests the potential of grazers benefiting from alternative N sources (e.g., microbiome-N) or other constituents (e.g., vitamins or metals) not measured in this study. Prey photosynthetic efficiency declined under grazing conditions, demonstrating that grazers can directly affect prey abundance through grazing and indirectly affect prey photophysiology, potentially via allelopathy, supporting previous findings of an inverse relationship between grazers and prey along the Florida Gulf Coast.

Ahn, So Hyun [Univ. of Maryland, Cambridge, MD (Un↗
DOE OSTI2025

Application of a Physics-Informed Convolutional Neural Network for Monitoring the Temperature Fields in High-Temperature Gas Reactors

Here, this work presents current advances in applying a physics-informed convolutional neural network (CNN) to evaluate temperature distributions in advanced reactors. Our goal is to demonstrate that the CNN can reconstruct temperature fields within the solid region of a prismatic fuel assembly in a high-temperature gas reactor (HTGR) with sensor data available in only a few cooling channels. Before that, we showcase the superior performance of the physics-informed CNN in comparison to a purely data-driven multilayer perceptron (MLP), considering a canonical heated channel setup. This analysis shows the advantages of our approach and justifies its choice. The datasets employed here are obtained upon numerical simulations performed with codes under the Nuclear Energy Advanced Modeling and Simulation program. This work is important, as industry experience indicates that the assembly material in HTGR concepts is prone to large thermal-mechanical loads nearing operational limits. This makes it crucial to characterize peak temperatures and their distributions near hot spots. Modern thermocouples are unreliable in these types of harsh environments because of the high neutron fluxes and elevated temperatures involved. The CNN-based field reconstruction represents an attractive solution, enabling sensor arrays in less aggressive locations and augmenting indirect predictions for less accessible regions. The results show that the CNN reduces prediction errors by orders of magnitude in comparison to the MLP, considering the simple yet well-representative heated channel case. In the case of the HTGR fuel assembly, the CNN can successfully reconstruct temperature fields over various cooling regimes. Furthermore, we also explore the algorithm’s ability to detect abnormalities. Interestingly, the CNN proves it has the capacity to detect blockage in one of the noninstrumented cooling channels.

Machine learning↗
DOE OSTI2026

Assessing Metal Ion Assignment Accuracy in Protein Data Bank Models via Elemental Spectroscopy

Accurate representation of metal ions in macromolecular structures is critical for chemical interpretation, computational modeling, and machine-learning methods that rely on Protein Data Bank (PDB) entries. However, the elemental identity of metals modeled in crystallographic structures is often inferred indirectly and rarely validated experimentally. Here, we combine Particle Induced X-ray Emission (PIXE) and X-ray Fluorescence Spectroscopy (XRFS) to determine the elemental composition of protein samples used to generate 70 deposited metalloprotein crystal structures. By analyzing the original protein material employed for crystallization, but before the addition of crystallization buffer solutions, we assess whether the modeled metal ions in deposited structures are consistent with experimentally detectable elemental content. We find that in a majority of cases, the metals modeled in the corresponding PDB entries are inconsistent with the metals present in the protein samples before crystallization, or that additional metals are present but not represented in the structural models. Spectroscopic results were integrated with automated crystallographic validation metrics, including real-space Z-difference (RSZD) analysis and systematic rerefinement, to evaluate atomic-number mismatch at metal sites. PIXE and XRFS show strong agreement for dominant elemental signals and provide complementary, scalable approaches for identifying suspect metal assignments. This work does not address physiological or functional metalation but instead highlights a widespread data integrity issue in deposited macromolecular structures, PDB-wide. These results establish an experimentally corroborated link between elemental identity and crystallographic validation metrics, enabling the large-scale detection of chemically inconsistent annotations in structural databases used for computational modeling and machine learning.

Crystallization↗
DOE OSTI2024

In situ detection of ferric reductase activity in the intestinal lumen of an insect

The rise of atmospheric oxygen as a result of photosynthesis in cyanobacteria and chloroplasts has transformed most environmental iron into the ferric state. In contrast, cells within organisms maintain a reducing internal milieu and utilize predominantly ferrous iron. Ferric reductases are enzymes that transfer electrons to ferric ions, either extracellularly or within endocytic vesicles, enabling cellular ferrous iron uptake through Divalent Metal Transporter 1. In mammals, duodenal cytochrome b is a ferric reductase of the intestinal epithelium, but how insects reduce and absorb dietary iron remains unknown. Here we provide indirect evidence of extracellular ferric reductase activity in a small subset of Drosophila melanogaster intestinal epithelial cells, positioned at the neck of the midgut’s anterior region. Dietary-supplemented bathophenanthroline sulphate (BPS) captures locally generated ferrous iron and precipitates into pink granules, whose chemical identity was probed combining in situ X-ray absorption near edge structure and electron paramagnetic resonance spectroscopies. An increased presence of manganese ions upon BPS feeding was also found. Control animals were fed with ferric ammonium citrate, which is accumulated into ferritin iron in distinct intestinal subregions suggesting iron trafficking between different cells inside the animal. Spectroscopic signals from the biological samples were compared to purified Drosophila and horse spleen ferritin and to chemically synthesized BPS-iron and BPS-manganese complexes. The results corroborated the presence of BPS-iron in a newly identified ferric iron reductase region of the intestine, which we propose constitutes the major site of iron absorption in this organism.

EPR↗