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At least 145 records · Page 8

Structural and enzymatic characterization of a host-specificity determinant from Salmonella

The Salmonella effector protein GtgE functions as a cysteine protease to cleave a subset of the Rab-family GTPases and to prevent delivery of antimicrobial agents to the Salmonella-containing vacuole. GtgE is an effector protein from Salmonella Typhimurium that modulates trafficking of the Salmonella-containing vacuole. It exerts its function by cleaving the Rab-family GTPases Rab29, Rab32 and Rab38, thereby preventing the delivery of antimicrobial factors to the bacteria-containing vacuole. Here, the crystal structure of GtgE at 1.65 Å resolution is presented, and structure-based mutagenesis and in vivo infection assays are used to identify its catalytic triad. A panel of cysteine protease inhibitors were examined and it was determined that N-ethylmaleimide, antipain and chymostatin inhibit GtgE activity in vitro. These findings provide the basis for the development of novel therapeutic strategies to combat Salmonella infections.

60 APPLIED LIFE SCIENCES↗

Vibrational Spectroscopy for the Determination of Ionizable Group Content in Ionomer Materials

An approach based on vibrational spectral measurements is described for determining the ionizable group content of ion conducting polymer membrane materials. Aimed at supporting the assessment of membrane stability and wear characteristics, performance is evaluated for attenuated total reflection Fourier transform infrared (ATR FT-IR) spectroscopy, confocal Raman microscopy, and ATR FT-IR microscopy using perfluorinated ionomer membrane standards. One set of ionomer standards contained a sulfonic acid ionizable group and the other a sulfonyl imide group. The average number of backbone tetrafluoroethylene (TFE) units separating the ionizable-group containing side chains was in the range of 7.2–2.1 (sulfonic acid set) and 10.5–4.6 (sulfonyl imide set). A poly(tetrafluoroethylene) (PTFE) sample was included as a blank, representing the limit of zero ionizable group (and maximum TFE) content. Calibration relationships were derived from area-normalized vibrational spectra. For all three methods, calibration models applied to independent spectral measurements of samples predicted the ratio of backbone TFE groups to ionizable groups in the repeat unit ( m) with a standard error of ≤ ±0.3. The confocal Raman and ATR FT-IR microscopy techniques achieved ideal blank responses and the lowest prediction errors, down to m ± 0.1 at the 90% confidence level. With its relative simplicity, low sample size requirements, and potential for quantitative micron-scale spatial mapping of the ionizable group content within a membrane, the approach has application to advancing materials development, including exploratory synthesis, durability and wear assessment, and in situ studies of membrane process.

Korzeniewski, Carol↗

Unit cell determination of coexisting post-perovskite and H-phase in (Mg,Fe)SiO3 using multigrain XRD: compositional variation across a laser heating spot at 119 GPa

Multigrain X-ray diffraction (XRD) can be used to accurately calculate the unit cell parameters of individual mineral phases in a mineral assemblage contained in a diamond anvil cell (DAC). Coexisting post-perovskite (ppv) and H-phase were synthesized at 119 GPa and 2500 K from (Mg 0.85 Fe 0.15 )SiO 3 in a laser-heated DAC. The unit cell parameters of the ppv and coexisting H-phase were determined using multigrain XRD with a 5 μm spatial resolution, close to the size of the X-ray beam, to understand compositional variations across the center area (20–30 μm) in a laser-heated sample. The ppv phase was Fe-depleted and the unit cell volume of ppv decreased by only 0.16 % (corresponding to ~3 % variation of FeSiO 3 ) from the heating center to 10 μm off the center, while the sample pressure remained at 119 GPa in a Ne quasi-hydrostatic environment. The unit cell volume of the H-phase decreased by 0.54 % (~10 % variation of FeSiO 3 content) over the same 10 μm distance. Both phases were more Fe-enriched in the slightly hotter center. This observation suggests that thermal diffusion may not be the major driver for the compositional variations of ppv and H-phase in the center portion of a laser-heated sample. Instead, these variations could be caused by a temperature effect on the partitioning between the ppv and H-phase over the small gradient.

58 GEOSCIENCES↗

Structural determinants of nuclear export signal orientation in binding to exportin CRM1

The Chromosome Region of Maintenance 1 (CRM1) protein mediates nuclear export of hundreds of proteins through recognition of their nuclear export signals (NESs), which are highly variable in sequence and structure. The plasticity of the CRM1-NES interaction is not well understood, as there are many NES sequences that seem incompatible with structures of the NES-bound CRM1 groove. Crystal structures of CRM1 bound to two different NESs with unusual sequences showed the NES peptides binding the CRM1 groove in the opposite orientation (minus) to that of previously studied NESs (plus). A comparison of minus and plus NESs identified structural and sequence determinants for NES orientation. The binding of NESs to CRM1 in both orientations results in a large expansion in NES consensus patterns and therefore a corresponding expansion of potential NESs in the proteome.

59 BASIC BIOLOGICAL SCIENCES↗

Magnetometer bias determination and attitude determination for near-earth spacecraft

A simple linear-regression algorithm is used to determine simultaneously magnetometer biases, misalignments, and scale factor corrections, as well as the dependence of the measured magnetic field on magnetic control systems. This algorithm has been applied to data from the Seasat-1 and the Atmosphere Explorer Mission-1/Heat Capacity Mapping Mission (AEM-1/HCMM) spacecraft. Results show that complete inflight calibration as described here can improve significantly the accuracy of attitude solutions obtained from magnetometer measurements. This report discusses the difficulties involved in obtaining attitude information from three-axis magnetometers, briefly derives the calibration algorithm, and presents numerical results for the Seasat-1 and AEM-1/HCMM spacecraft.

Lerner, G. M.↗

Determination of an angle of attack sensor correction for a general aviation airplane at large angles of attack as determined from wind tunnel and flight tests

A comprehensive investigation into the flow correction for an angle of attack sensor mounted ahead of the wing tip of a general aviation research airplane has been conducted at the Langley Research Center. This correction has been determined in wind tunnels using a full-scale model up to angles of attack of 45 deg and a 1/5-scale model up to 80 deg angle of attack. The flow correction has also been obtained in flight by using a standard technique at low angles of attack and in spinning flight at larger angles of attack, by using both a simple approximate technique and a parameter estimation technique. The results show the correction is significant, reaching 10 deg at a measured angle of attack of about 90 deg. The flow correction was sensitive to the angle of sideslip at measured angles of attack greater than 60 deg and was not influenced by wing leading-edge modifications or aileron deflections.

Moul, T. M.↗

Algorithms for Autonomous GPS Orbit Determination and Formation Flying: Investigation of Initialization Approaches and Orbit Determination for HEO

This report summarizes the efforts to date in processing GPS measurements in High Earth Orbit (HEO) applications by the Colorado Center for Astrodynamics Research (CCAR). Two specific projects were conducted; initialization of the orbit propagation software, GEODE, using nominal orbital elements for the IMEX orbit, and processing of actual and simulated GPS data from the AMSAT satellite using a Doppler-only batch filter. CCAR has investigated a number of approaches for initialization of the GEODE orbit estimator with little a priori information. This document describes a batch solution approach that uses pseudorange or Doppler measurements collected over an orbital arc to compute an epoch state estimate. The algorithm is based on limited orbital element knowledge from which a coarse estimate of satellite position and velocity can be determined and used to initialize GEODE. This algorithm assumes knowledge of nominal orbital elements, (a, e, i, omega, omega) and uses a search on time of perigee passage (tau(sub p)) to estimate the host satellite position within the orbit and the approximate receiver clock bias. Results of the method are shown for a simulation including large orbital uncertainties and measurement errors. In addition, CCAR has attempted to process GPS data from the AMSAT satellite to obtain an initial estimation of the orbit. Limited GPS data have been received to date, with few satellites tracked and no computed point solutions. Unknown variables in the received data have made computations of a precise orbit using the recovered pseudorange difficult. This document describes the Doppler-only batch approach used to compute the AMSAT orbit. Both actual flight data from AMSAT, and simulated data generated using the Satellite Tool Kit and Goddard Space Flight Center's Flight Simulator, were processed. Results for each case and conclusion are presented.

Axelrad, Penina↗

The Role of Gas in Determining Image Quality and Resolution During In Situ Scanning Transmission Electron Microscopy Experiments

As gas-solid heterogeneous catalytic reactions are molecular in nature, a full mechanistic understanding of the process requires atomic scale characterization under realistic operating conditions. While atomic resolution imaging has become a routine in modern high-vacuum (scanning) transmission electron microscopy ((S)TEM), both image quality and resolution nominally degrade when reaction gases are introduced. In this work, we systematically assess the effects of different gases at various pressures on the quality and resolution of images obtained at room temperature in the annular dark field STEM imaging mode using a differentially pumped (DP) gas cell. This imaging mode is largely free from inelastic scattering effects induced by the presence of gases and retains good imaging properties over a wide range of gas mass/pressures. We demonstrate the application of the ESTEM with atomic resolution images of a complex oxide alkane oxidation catalyst MoVNbTeOx (M1) immersed in light and heavy gas environments.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Determination of CO 2 capture during accelerated carbonation of engineered cementitious composite pastes by thermogravimetry

The concerns about greenhouse gas emissions have triggered investigations among the scientific community. The accelerated carbonation curing has been used as a tool to capture CO 2 at early stages of cement-based material fabrication. In a previous study, the authors quantified the amount of CO 2 captured in portland cement pastes by thermal analysis, at high relative humidity precure conditions. In the present work, the authors quantified the amount of CO 2 captured in binary pastes derived from engineered cementitious composites (ECC), a family of composites worldwide used, whose one of their features is the precure at low relative humidity conditions. Two types of ECC pastes (1.2 and 2.2) were submitted to 4 h and 24 h of accelerated carbonation after 24 h of initial hydration. Using thermogravimetry and derivative thermogravimetry, the amounts of captured CO 2 and respective carbonation degrees were quantified. Furthermore, the results showed that ECC paste 1.2 presented the highest values of captured CO 2 and carbonation degree, considering all reactive components. In contrast, ECC paste 2.2 presented the highest values of these two parameters, when considering only portland cement as reactive component. For both pastes, the hydration degrees of the carbonated samples were higher than those of the non-carbonated references, indicating that in the used operating conditions, carbonation enhances ECC paste hydration.

42 ENGINEERING↗