4-D Aggregate Deconvolution for Aerial Measurements RSLN-026-20, Year 1
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Avery Guild-Bingham will present these slides during the 9th Annual AMS Technical Exchange meeting (virtual) held on Oct 6-7, 2021. Attendees include Aerial Measuring System staff and partners from US laboratories, as well as Aerial Radiation detection scientists from partner countries such as the UK, Germany, Switzerland, etc. Overall support provided by NA-81, Office of Nuclear Incident Policy and Cooperation.
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Metagenome assembly from short next-generation sequencing data is a challenging process due to its large scale and computational complexity. Clustering short reads by species before assembly offers a unique opportunity for parallel downstream assembly of genomes with individualized optimization. However, current read clustering methods suffer either false negative (under-clustering) or false positive (over-clustering) problems. Here we extended our previous read clustering software, SpaRC, by exploiting statistics derived from multiple samples in a dataset to reduce the under-clustering problem. Using synthetic and real-world datasets we demonstrated that this method has the potential to cluster almost all of the short reads from genomes with sufficient sequencing coverage. The improved read clustering in turn leads to improved downstream genome assembly quality.
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Diagram extracting Lorentzian line widths from Fabry-Perot interferometer profiles
A relatively simple change in the treatment of the input function in numerical integration of high-order differential equations by Runge-Kutta methods provides substantial improvements in accuracy, particularly when the forcing function is in digitized form. The Runge-Kutta-Gill coefficients are modified to incorporate the changes; with pulse-type excitations, improvements on the order of 2 to 50 times greater accuracy are demonstrated.
One year of longwave radiation data from July 1975 through June 1976 from the Nimbus 6 satellite Earth radiation budget experiment is analyzed by representing the radiation field by a spherical harmonic expansion. The data are from the wide field of view instrument. Contour maps of the longwave radiation field and spherical harmonic coefficients to degree 12 and order 12 are presented for a 12 month data period.
The statistical properties of a cubic smoothing spline and its derivative are analyzed. It is shown that unless unnatural boundary conditions hold, the integrated squared bias is dominated by local effects near the boundary. Similar effects are shown to occur in the regularized solution of a translation-kernel intergral equation. These results are derived by developing a Fourier representation for a smoothing spline.
Several fields of orbital gamma ray spectroscopy data have been deconvolved in order to model the distribution of Th over the Mare Imbrium and northern Oceanus Procellarum portions of the Apollo 15 lunar ground track, which in combination with a prior study of the Apenninus region covers a continuous swath from 10 deg E to 60 deg W in the northwest quadrant. The crater of the Aristarchus region dominates the Th distribution, with a concentration of 20 ppm, and substantial enhancements are also found in the mare regions around Brayley and at the ejecta blankets of Timocharis and Lambert. The existence of enhanced Th concentrations in mare basalt regions suggests that reservoirs of some late stage mare basalts incorporated KREEP-rich material during formation or transit.
A solution is presented to the problem of deconvolving wide field of view measurements of earth-emitted radiation for the case of limb-darkening functions which are geographically dependent. The method of linear perturbations is used and the effects of limb-darkening function variations at various scales are evaluated. A simple model for the geographical variation of the limb-darkening function based on the radiant exitance is introduced. It is shown that the effect of these variations on the global average radiant exitance vanishes identically, and is insignificant for large spatial scales. For wave numbers six through twelve, the limb-darkening effects are small but possibly significant. At wave numbers greater than twelve, the noise due to meteorological variability dominates for an orbit altitude of 1100 km. The smallness of these effects is due to the smoothness of the monthly averaged radiant exitance field.
The development of vector processing computers of the streaming array architectures has made possible a dramatic decrease in the time required for the solution of problems, i.e., for those algorithms which readily lend themselves to sequential operations on long vectors. There has concurrently been rapid growth in the applications of the techniques generally known as mathematical digital filtering, also called signal analysis, digital signal processing, time series analysis, and digital image processing. The best known applications of these techniques is to seismic data and two-dimensional images, data types consisting of very large collections of numbers. A major limitation for these cases is the size and speed of the computer available. Therefore, a move to the streaming array architecture can result in marked improvement in the data analysis techniques which may be employed.
Linear filtering techniques currently used for the restoration of noisy, blurred or otherwise degraded image data are discussed and new techniques related to the iterative techniques of Morrison and van Cittert are developed and implemented. Programs written for the implementation are discussed in the appendices. It is shown that the new techniques are convergent for any system response function, and they are applied to the task of restoring a severely blurred image.