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At least 145 records · Page 8

Profiling Production OpenSHMEM Applications, In: OpenSHMEM 2016: OpenSHMEM and Related Technologies. Enhancing OpenSHMEM for Hybrid Environments

Developing high performance OpenSHMEM applications routinely involves gaining a deeper understanding of software execution, yet there are numerous hurdles to gathering performance metrics in a production environment. Most OpenSHMEM performance profilers rely on the PSHMEM interface but PSHMEM is an optional and often unavailable feature. We present a tool that generates direct measurement performance profiles of OpenSHMEM applications even when PSHMEM is unavailable. The tool operates on dynamically linked and statically linked application binaries, does not require debugging symbols, and functions regardless of compiler optimization level. Integrated in the TAU Performance System, the tool uses automatically-generated wrapper libraries that intercept OpenSHMEM API calls to gather performance metrics with minimal overhead. Dynamically linked applications may use the tool without modifying the application binary in any way.

Computer Science↗

Molecular Mechanisms Affecting Cell Wall Properties and Leaf Architecture [Chapter 8]

Leaf architecture is determined by cell shape, size, and density. As plant cells are enclosed by a rigid cell wall, changes to leaf architecture have to occur through downstream genetic systems that induce alterations in (1) cell wall composition, (2) synthesis, assembly, and orientation of cytoskeletal elements and/or (3) the degree of cross-linkage between wall components in response to upstream developmental and environmental cues. This chapter reviews how leaf architecture is influenced by molecular mechanisms that modulate the above wall modification processes. Upstream signaling systems such as salicylic (SA), jasmonic (JA), and gibberellic (GA) acid have significant effects on leaf architecture. GA promotes and JA and SA suppress growth. Leaf architectural changes are brought about by these upstream systems in concert or in an interactive manner, and the associated downstream molecular systems that are involved in executing changes to cell wall properties will be discussed. Evidence will be provided to show that xyloglucan endotransglucosylase/hydrolase and pectin methyltransferase/pectin methylesterase/pectin methylesterase inhibitor systems are key downstream execution points of leaf architectural changes common to different upstream molecular systems. Optimization of leaf architecture maximizes light interception,gas exchange properties, and photosynthesis. In addition, plant growth has been shown to be more sensitive to leaf area than to area-based photosynthesis rate. Therefore, understanding genes and molecular mechanisms that affect cell wall properties and leaf architecture has broader implications in terms of crop improvement, and candidate genes that can be manipulated to optimize leaf architecture in order to maximize net carbon assimilation and plant growth will be proposed.

59 BASIC BIOLOGICAL SCIENCES↗

Strong coupling expansion for the conformal Pomeron/Odderon trajectories

From the perspective of AdS/CFT the Pomeron is identified with a Reggeized Graviton, while the Odderons correspond to Reggeized anti-symmetric AdS 5 Kalb-Ramond tensor-fields. In this paper, we consider the strong coupling expansion of the dimension of the leading twist operators dual to these Regge trajectories, Δ(j), to determine its analytic continuation in j beyond the diffusion limit. In particular, we compute the strong coupling expansion of the intercept to order λ -3 , where λ is the t’Hooft coupling, for both the Pomeron, which is C = +1 crossing-even, and the “Odderons”, which are the leading C = -1 crossing-odd Regge singularities. We discuss the spectral curves of the class of single-trace operators to which these string modes couple.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Detectors in weakly-coupled field theories

We initiate a study of asymptotic detector operators in weakly-coupled field theories. These operators describe measurements that can be performed at future null infinity in a collider experiment. In a conformal theory they can be identified with light-ray operators, and thus have a direct relation to the spectrum of the theory. After a general discussion of the underlying physical picture, we show how infrared divergences of general detector operators can be renormalized in perturbation theory, and how they give rise to detector anomalous dimensions. We discuss in detail how this renormalization can be performed at the intersections of the Regge trajectories where non-trivial mixing occurs, which is related to the poles in anomalous dimensions at special values of spin. Finally, we discuss novel horizontal trajectories in scalar theories and show how they contribute to correlation functions. Our calculations are done in the example of Φ 4 theory in d = 4 - ϵ dimensions, but the methods are applicable more broadly. At the Wilson-Fisher fixed point our results include an explicit expression for the Pomeron light-ray operator at two loops, as well as a prediction for the value of the Regge intercept at five loops.

47 OTHER INSTRUMENTATION↗

The Lorentzian inversion formula and the spectrum of the 3d O(2) CFT

We study the spectrum and OPE coefficients of the three-dimensional critical O(2) model, using four-point functions of the leading scalars with charges 0, 1, and 2 ( s , $\phi$, and t ). We obtain numerical predictions for low-twist OPE data in several charge sectors using the extremal functional method. We compare the results to analytical estimates using the Lorentzian inversion formula and a small amount of numerical input. We find agreement between the analytic and numerical predictions. We also give evidence that certain scalar operators lie on double-twist Regge trajectories and obtain estimates for the leading Regge intercepts of the O(2) model.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Study of the Bose-Einstein correlations of same-sign pions in proton-lead collisions

Correlations of same-sign charged pions are analysed using proton-lead collision data collected by the LHCb experiment at a nucleon-nucleon centre-of-mass energy of 5.02 TeV, corresponding to an integrated luminosity of 1.06 nb -1 . Bose-Einstein correlations are observed in the form of an enhancement of pair production for same-sign charged pions with a small four-momentum difference. The dependence of the correlation radius and the intercept parameter on the reconstructed charged-particle multiplicity is investigated. The measured correlation radii scale linearly with the cube root of the reconstructed charged-particle multiplicity, being compatible with predictions of hydrodynamic models on the collision system evolution.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Batch Adsorption and Column Transport Studies of 2,4,6-Trinitrotoluene in Chinese Loess

In present study, batch and column tests were conducted to investigate the kinetic and thermodynamic characteristics of the adsorption and transport of 2,4,6-trinitrotoluene (TNT) in Chinese loess with specific focus on the role of inherent colloid particles. Batch tests showed that a lot of TNT was absorbed in suspended colloid particles, and its adsorption reached equilibrium after about 10 h, the adsorption process can be best-fit by the pseudo-second order kinetic and Freundlich model. The adsorption was spontaneous, endothermic process, implying the adsorbed TNT is likely to release from soil matrix. These portend that the adsorbed TNT has a potential to co-transport with inherent colloid particles in loess. The column tests identified the potential, and showed TNT transport had obvious retardation effect, which may be ascribed to the release and transport of inherent colloidal particles as a key carrier. These findings are helpful to evaluate the loess interception and antifouling performance.

54 ENVIRONMENTAL SCIENCES↗

Chromosome aberrations among atomic-bomb survivors exposed in utero: updated analysis accounting for revised radiation doses and smoking

A previous study of peripheral blood lymphocyte translocations around age 40 among atomic-bomb survivors exposed in utero revealed no overall association with radiation dose—despite a clear association between translocations and dose among their mothers—but the data suggested an increase at doses below 100 mGy with a definite peak. That analysis of the in utero-exposed survivors did not adjust for their subsequent smoking behavior, an established cause of chromosomal aberrations, or their subsequent exposures to medical irradiation, a potential mediator. In addition, atomic-bomb survivor radiation dose estimates have subsequently been updated and refined. We therefore re-estimated the dose response using the latest DS02R1 dose estimates and adjusting for smoking as well as for city and proximal–distal location at the time of exposure to the atomic bomb. Sex of the survivor, mother’s age around the time of conception, and approximate trimester of gestation at the time of exposure were also considered as explanatory variables and modifiers. Precision of the estimated dose response was slightly lower due to greater variability near zero in the updated dose estimates, but there was little change in evidence of a low-dose increase and still no suggestion of an overall increase across the entire dose range. Adjustment for smoking behavior led to a decline in background number of translocations (the dose–response intercept), but smoking did not interact with dose overall (across the entire dose range). Adjustment for medical irradiation did not alter the association between dose and translocation frequency. Sex, mother’s age, and trimester were not associated with number of translocations, nor did they interact with dose overall. Interactions with dose in the low-dose range could not be evaluated because of numerical instability.

59 BASIC BIOLOGICAL SCIENCES↗

Belowground Biomass Response to Nutrient Enrichment Depends on Light Limitation Across Globally Distributed Grasslands

Anthropogenic activities are increasing nutrient inputs to ecosystems worldwide, with consequences for global carbon and nutrient cycles. Recent meta analyses show that above ground primary production is often co-limited by multiple nutrients; however, little is known abouthowroot production responds to changes in nutrient availability. At twenty-nine grassland sites on four continents, we quantified shallow root biomass responses to nitrogen (N), phosphorus (P) and potassium plus micronutrient enrichment and compared below- and above ground responses. We hypothesized that optimal allocation theory would predict context dependence in root biomass responses to nutrient enrichment, given variation among sites in the resources limiting to plant growth (specifically light versus nutrients). Consistent with the predictions of optimal allocation theory, the proportion of total biomass below ground declined with N or P addition, due to increased biomass above ground (for N and P) and decreased biomass below ground (N, particularly in sites with low canopy light penetration). Absolute root biomass increased with N addition where light was abundant at the soil surface, but declined in sites where the grassland canopy intercepted a large proportion of incoming light. These results demonstrate that below ground responses to changes in resource supply can differ strongly from above ground responses, which could significantly modify predictions of future rates of nutrient cycling and carbon sequestration. Our results also highlight how optimal allocation theory developed for individual plants may help predict below ground biomass responses to nutrient enrichment at the ecosystem scale across wide climatic and environmental gradients.

Cleland, Elsa↗

Flowing fluid electrical conductivity logging of a deep borehole during and following drilling: estimation of transmissivity, water salinity and hydraulic head of conductive zones

Flowing fluid electrical conductivity (FFEC) logging is a hydrogeologic testing method that is usually conducted in an existing borehole. However, for the 2,500-m deep COSC-1 borehole, drilled at Åre, central Sweden, it was done within the drilling period during a scheduled 1-day break, thus having a negligible impact on the drilling schedule, yet providing important information on depths of hydraulically conductive zones and their transmissivities and salinities. In this paper, we present a reanalysis of this set of data together with a new FFEC logging data set obtained soon after drilling was completed, also over a period of 1 day, but with a different pumping rate and water-level drawdown. Their joint analysis not only results in better estimates of transmissivity and salinity in the conducting fractures intercepted by the borehole, but also yields the hydraulic head values of these fractures, an important piece of information for the understanding of hydraulic structure of the subsurface. Two additional FFEC logging tests were done about 1 year later, and are used to confirm and refine this analysis. Results show that from 250 to 2,000 m depths, there are seven distinct hydraulically conductive zones with different hydraulic heads and low transmissivity values. For the final test, conducted with a much smaller water-level drawdown, inflow ceased from some of the conductive zones, confirming that their hydraulic heads are below the hydraulic head measured in the wellbore under non-pumped conditions. Lastly, the challenges accompanying 1-day FFEC logging are summarized, along with lessons learned in addressing them.

58 GEOSCIENCES↗

Hydrochemical and isotopic characteristics of groundwater in the northeastern Tennger Desert, northern China

Groundwater is typically the only water source in arid regions, and its circulation processes should be better understood for rational resource exploitation. Stable isotopes and major ions were investigated in the northeastern Tengger Desert, northern China, to gain insights into groundwater recharge and evolution. In the northern mountains, Quaternary unconsolidated sediments, exposed only in valleys between hills, form the main aquifer, which is mainly made of aeolian sand and gravel. Most of the mountain groundwater samples plot along the local meteoric water line (LMWL), with a more depleted signature compared to summer precipitation, suggesting that mountain groundwater was recharged by local precipitation during winter. Most of the groundwater was fresh, with total dissolved solids less than 1 g/L; dominant ions are Na{sup +}, SO{sub 4}{sup 2−} and Cl{sup −}, and all mineral saturation indices are less than zero. Evaporation, dissolution and cation exchange are the major hydrogeochemical processes. In the southern plains, however, the main aquifers are sandstone. The linear regression line of δD and δ{sup 18}O of groundwater parallels the LMWL but the intercept is lower, indicating that groundwater in the plains has been recharged by ancient precipitation rather than modern. Both calcite and dolomite phases in the plains groundwater are close to saturation, while gypsum and halite can still be dissolved into the groundwater. Different recharge mechanisms occur in the northern mountains and the southern plains, and the hydraulic connection between them is weak. Because of the limited recharge, groundwater exploitation should be limited as much as possible.

58 GEOSCIENCES↗

Fischer-Tropsch Synthesis: XANES Investigation of Hydrogen Chloride Poisoned Iron and Cobalt-Based Catalysts at the K-Edges of Cl, Fe, and Co

The effect of co-fed hydrogen chloride (HCl) in syngas on the performance of iron and cobalt-based Fischer-Tropsch (FT) catalysts was investigated in our earlier studies [ACS Catal. 5 (2015) 3124-3136 and DOE final report 2011; Catal. Lett. 144 (2014) 1127-1133]. For an iron catalyst, lower HCl concentrations (< 2.0 ppmw of HCl)) in syngas did not significantly affect the activity, whereas rapid deactivation occurred at higher concentrations (~20 ppmw). With cobalt catalysts, even low concentrations of HCl (100 ppbw) caused catalyst deactivation, and the deactivation rate increased with increasing HCl concentration in the syngas. The deactivation of the catalysts is explained by the chloride being adsorbed on the catalyst surface to (1) block the active sites and/or (2) electronically modify the sites. In this study, XANES spectroscopy was employed to investigate HCl poisoning mechanism on the iron and cobalt catalysts. Cl K-edge normalized XANES results indicate that Cl is indeed present on the catalyst following HCl poisoning and exhibits a structure similar to the family of compounds MCl; two main peaks are formed, with the second peak consisting of a main peak and a higher energy shoulder. At the Co K and Fe K edges, the white line was observed to be slightly increased relative to the same catalyst under clean conditions. There is then the additional possibility that Cl adsorption may act in part to intercept electron density from the FT metallic function (e.g.,cobalt or iron carbide). If so, this would result in less back-donation and therefore hinder the scission of molecules such as CO.

10 SYNTHETIC FUELS↗

Combining Deep Learning and scatterControl for High-Throughput X-ray CT Based Non-Destructive Characterization of Large-Scale Casted Metallic Components

X-ray computed tomography (XCT) is essential for nondestructive evaluation and quality control of large-scale metal components. XCT imaging, however, faces significant challenges from metal artifacts, particularly those caused by Compton scattering, which degrade image quality and obscure critical details. Hardware-based solutions (e.g. scatterControl) offer advancements by intercepting scattered photons and reducing artifacts, but they can be time-consuming and require additional processing. Here, we propose modifying and leveraging a novel deep learning (DL) framework, Simurgh, to enhance and accelerate scatter correction in XCT. By combining scatterControl with DL-based artifact removal, we demonstrate significant reduction in scan time while producing high-quality reconstructions. Through extensive evaluation on industrial XCT data, we show that our methods reduce scan time by up to more than 10 x while preserving flaw detectability. Quantitative analysis across multiple segmentation techniques confirms that Simurgh-based reconstructions consistently outperform traditional Feldkamp-Davis-Kress, model-based iterative reconstruction, and commercial DL models in both pixel-level and task-specific evaluations, enabling scalable, high-throughput XCT workflows for characterization of large scale components in applications such as casting and metal additive manufacturing.

Complex metal parts↗

Microstructural Analysis of Powder Metallurgy Tool Steels in the Context of Abrasive Wear Behavior: A New Computerized Approach to Stereology

The present work describes a new methodology designed to characterize the microstructures of tool steels containing carbide hard phases, with the focus set on their abrasive wear resistance. A series of algorithms were designed and implemented in MATLAB® to (i) recognize each of the features of interest, (ii) measure relevant quantities and (iii) characterize each of the phases and the alloy in function of attributes usually neglected in wear description applications: size distribution, shape and contiguity of the hard phases. The new framework incorporates new parameters to describe each one of these attributes, as observed in SEM micrographs. All three aforementioned stages contain novel contributions that can be potentially beneficial to the field of materials design in general and to the field of alloy design for severely abrasive environments in particular. Models of known geometry and micrographs of different powder metallurgy steels were analyzed, and the obtained results were compared with the obtained by the linear intercept method. The relation between the new parameters and the ones available in the scientific literature is also discussed.

36 MATERIALS SCIENCE↗

Prediction of Mass Spectral Response Factors from Predicted Chemometric Data for Druglike Molecules

A method is developed for the prediction of mass spectral ion counts of drug-like molecules using in silico calculated chemometric data. Various chemometric data, including polar and molecular surface areas, aqueous solvation free energies, and gas-phase and aqueous proton affinities were computed, and a statistically significant relationship between measured mass spectral ion counts and the combination of aqueous proton affinity and total molecular surface area was identified. In particular, through multilinear regression of ion counts on predicted chemometric data, we find that log{sub 10}(MS ion counts) = –4.824 + c{sub 1}•PA + c{sub 2}•SA, where PA is the aqueous proton affinity of the molecule computed at the SMD(aq)/M06-L/MIDI!//M06-L/MIDI! level of electronic structure theory, SA is the total surface area of the molecule in its conjugate base form, and c{sub 1} and c{sub 2} have values of –3.912 × 10{sup –2} mol kcal{sup –1} and 3.682 × 10{sup –3} Å{sup –2}. On a 66-molecule training set, this regression exhibits a multiple R value of 0.791 with p values for the intercept, c{sub 1}, and c{sub 2} of 1.4 × 10{sup –3}, 4.3 × 10{sup –10}, and 2.5 × 10{sup –6}, respectively. Application of this regression to an 11-molecule test set provides a good correlation of prediction with experiment (R = 0.905) albeit with a systematic underestimation of about 0.2 log units. This method may prove useful for semiquantitative analysis of drug metabolites for which MS response factors or authentic standards are not readily available. .

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

Options and uncertainties in planetary defense: Impulse-dependent response and the physical properties of asteroids

In this paper we discuss that though rare, asteroid impacts are inevitable, and with the current state of technology, kinetic impactors are the preferred but not the complete solution. If the time to impact is short, or the threatening body too large, nuclear deflection serves as a final option. This work is part of an integrated study by National Aeronautics and Space Administration (NASA) and the National Nuclear Security Administration (NNSA) to better determine the relative efficacy of these complimentary approaches. In particular, we examine the important material properties that affect each approach, to improve critical characterization efforts, and reduce uncertainty in the limits of the impactor technology. Impact speeds for kinetic impactors on Near-Earth Object (NEO) intercept trajectories commonly range from 5 to 20 km/s, resulting in significant crater ejecta and a momentum enhancement above that carried by the impactor. This enhancement depends substantially on the strength and porosity of the asteroid, as well as the impact speed. Here simulations from different codes are presented, along with constraints from experimental measurements. The uncertainties due to ignorance of the strength and porosity of the impact point are significant in determining the limits of impactor sufficiency. The nuclear approach is considered within the context of current capabilities, posing no need to test, as extant and well-understood devices are sufficient for the largest known Potentially Hazardous Objects (PHOs). Results of x-ray sources with realistic spectra as well as blackbody spectra are given, along with some assessment on composition dependence.

79 ASTRONOMY AND ASTROPHYSICS↗

Dissipative particle dynamics model for colloid transport in porous media

We present that the transport of colloidal particles in porous media can be effectively modeled with a new formulation of dissipative particle dynamics, which augments standard DPD with non-central dissipative shear forces between particles while preserving angular momentum. Our previous studies have demonstrated that the new formulation is able to capture accurately the drag forces as well as the drag torques on colloidal particles that result from the hydrodynamic retardation effect. In the present work, we use the new formulation to study the contact efficiency in colloid filtration in saturated porous media. Note that the present model include all transport mechanisms simultaneously, including gravitational sedimentation, interception and Brownian diffusion. Our results of contact efficiency show a good agreement with the predictions of the correlation equation proposed by Tufenkji and EliMelech, which also incorporate all transport mechanisms simultaneously without the additivity assumption.

36 MATERIALS SCIENCE↗