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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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At least 145 records · Page 8
All sourcesNASA NTRSDOE OSTI
DOE OSTI2015

Ebola Virus VP35 Interaction with Dynein LC8 Regulates Viral RNA Synthesis

Ebola virus VP35 inhibits alpha/beta interferon production and functions as a viral polymerase cofactor. Previously, the 8-kDa cytoplasmic dynein light chain (LC8) was demonstrated to interact with VP35, but the functional consequences were unclear. Furthermore we demonstrate that the interaction is direct and of high affinity and that binding stabilizes the VP35 N-terminal oligomerization domain and enhances viral RNA synthesis. Mutational analysis demonstrates that VP35 interaction is required for the functional effects of LC8.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2021

Structural Simluation Toolkit (SST) v.11.0

The SST provides a parallel framework to perform system simulation of computer architectures to determine their performance and power consumption. Additionally, the SST contains basic models of a computer processor, and interconnect and can connect to an external memory simulator (DRAMSim II). The SST framework provides a simple interface by which other computer simulation models can be combined under a common parallel discrete event-based simulation environment. This allows design exploration of future architectures, analysis of how current computer programs will function on future architectures. The SST provides a parallel discrete event simulation framework, including partitioning and object distribution over MPI. It also provides a mechanism by which components can report their power consumption for analysis.

Rodrigues, ArunF.↗
DOE OSTI2022

Structural Simluation Toolkit (SST) v.12.0

The Structural Simulation Toolkit (SST) was developed to explore innovations in highly concurrent computing systems where the instruction set architecture (ISA), micro-architecture, and memory interact with the programming model and communications system. The package provides a fully modular design for extensive exploration of an individual system parameter as well as a parallel simulation environment based on message passing interface (MPI) which enable a high level of performance as well as the ability to look at large systems. Sandia National Laboratories is a multimission laboratory managed and operated by National Technology & Engineering Solutions of Sandia, LLC, a wholly owned subsidiary of Honeywell International Inc., for the U.S. Department of Energy’s National Nuclear Security Administration under contract DE-NA0003525.

Rodrigues, ArunF.↗
DOE OSTI2019

Indocyanine Green Fluorescence Imaging with Lymphoscintigraphy for Sentinel Node Biopsy in Melanoma: Increasing the Sentinel Lymph Node-Positive Rate

Introduction: The goal of this study was to analyze patients who underwent a sentinel lymph node biopsy (SLNB) in melanoma with the combination of radioisotope lymphoscintigraphy and indocyanine green (ICG) fluorescence imaging to compare our true positive (TP) rate, a means to perform immediate analysis of the SLNB, with that of the literature. Methods: Consecutive cutaneous melanoma patients who underwent SLNB with lymphoscintigraphy and ICG-based fluorescence imaging by the senior author (BG) from 2012 to 2018 were prospectively enrolled. The average expected SLN-positive rate per T stage was calculated based on three studies and compared with our SLN-positive rate. Results: Overall, 574 consecutive patients were analyzed. Average Breslow thickness was 1.9 mm. A total of 1754 sentinel nodes were sampled; 1497 were identified by gamma probe signaling and ICG, 241 were identified by gamma probe signaling only, and 16 were identified by ICG only. There were 123 (21.4%) patients with at least one positive SLN; 113 (91.9%) had at least one positive node identified with both gamma probe signaling and ICG, 8 (6.5%) had positive node(s) identified with gamma probe signaling only, and 2 (1.6%) had positive node(s) identified with ICG only. There was an overall 21.4% SLN-positive rate, with 8% T1, 18.5% T2, 41.1% T3, and 52.4% T4, which is higher than the predicted rates for each stage. Conclusions: With the largest cohort of patients reported who underwent a melanoma SLNB with lymphoscintigraphy and ICG, we demonstrated that this technique results in higher SLN-positive rates than predicted. Patients are being followed but, given the TP data, knowledge of our results may foster the use of this modality to improve staging and treatment options.

62 RADIOLOGY AND NUCLEAR MEDICINE↗
DOE OSTI2025

The Global Spectra-Trait Initiative: A database of paired leaf spectroscopy and functional traits associated with leaf photosynthetic capacity (v1.0.0)

The Global Spectra-Trait Initiative (GSTI) aims to generate generalizable spectra trait models using reflectance data to predict leaf traits associated with the photosynthesis capacity of leaves. It comprises a synthesized dataset of leaf trait data, input datasets and code. Leaf traits include the maximum carboxylation rate of rubisco (Vcmax), the maximum electron transport rate (Jmax), the dark respiration, as well as the prediction of leaf nitrogen, leaf mass per area (LMA), and leaf water content (LWC). The dataset comprises >7500 paired observations from around 400 species from a broad range of biomes. This dataset comprises a zip file of the GSTI GitHub repository (https://github.com/plantphys/gsti), the synthesized database (.csv) and database metadata files. This dataset was updated on 2025-12-12 with minor edits to mirror the accepted manuscript version and GitHub release (Version 1.0.0 (ESSD accepted version)). Edits included minor changes to the project documentation on GitHub and removal of 12 duplicate entries from the database.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2021

Leaf gas exchange data, Nov 2018 and May 2019, Daintree Rainforest, Australia

This data package contains leaf gas exchange data for 11 canopy tree species in the control and drought treatments at the Daintree Rainforest Observatory in Queensland, Australia (AU-DRO) with the purpose of testing for differences in gas exchange between treatments. Data were collected at the end of the dry season (November 2018) and end of the wet season (May 2019). Using a canopy crane, large branches (>1 m) were collected from the top of the canopy and immediately placed in a bucket of water, upon which the LI-6800 leaf chamber was clamped onto a recently mature leaf with minimal herbivory. Measurements were recorded every 3 seconds for 3 minutes total. The species included in the dataset are: Castanospermum australe, Cleistanthus myrianthus, Cryptocarya mackinnoniana, Dysoxylum papuanum, Elaeocarpus angustifolius (Elaeocarpus grandis), Endiandra microneura, Mallotus paniculatus, Myristica globosa, Rockinghamia angustifolia, Synima cordierorum, Syzygium spp. The two data files included are: 1. LICOR_Data_AU_DRO_2019_GasEx.csv (a compilation of individual LICOR output files, with correction of user input errors such as incorrect species spelling) 2. ESS_DIVE_Data_AU_DRO_2019_GasEx.csv (selected variables and converted units from LICOR_Data_AU_DRO_2019_GasEx.csv to follow the standard gas exchange reporting format from Ely et al. 2021 Ecological Informatics). The metadata files included are: (3) ESS_DIVE_Metadata_AU_DRO_2019_GasEx.xlsx (4) File_Submission_Metadata_AU_DRP_2019_GasEx.xlsx (5) E-Field_Log_AU_DRO_2019_GasEx.xlsx (6) Data_Column_Description_AU_DRO_2019_GasEx.xlsx.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2021

Functional trait data for 11 canopy tree species in the control and drought treatments at AU-DRO (2018-2019)

This data package contains foliar abscisic acid levels, xylem anatomy, foliar d13C, leaf mass per area, leaf water potentials, non-structural carbohydrates, and pressure volume curve traits for 11 canopy tree species in the control and drought treatments at the Daintree Rainforest Observatory in Queensland, Australia (AU-DRO). Data were collected at the end of the dry season (Nov 2018) and end of the wet season (May 2019). The species included in the dataset are: Castanospermum australe, Cleistanthus myrianthus, Cryptocarya mackinnoniana, Dysoxylum papuanum, Elaeocarpus angustifolius (Elaeocarpus grandis), Endiandra microneura, Mallotus paniculatus, Myristica globosa, Rockinghamia angustifolia, Synima cordierorum, Syzygium spp. These data correspond to the previously archived dataset “Leaf gas exchange data, Nov 2018 and May 2019, Daintree Rainforest, Australia. NGEE-Tropics Data Archive” (DOI: 10.15486/ngt/1773854).

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2021

Raw leaf gas exchange data, Leaf traits and 13CO2 experiment in the Amazon basin, Manaus, Brazil, 2019

This data package contains raw light response curves of mature leaves from 26 individuals, distributed among 18 species with different canopy positions, and leaf traits (LMA, N, P, and NSC) from Manaus-Brazil (June-November 2019). Branches were cut from the tree and re-cut under water. All measurements were made using (Li-6400XT, Li-Cor®, Lincoln, USA) under standard environmental conditions. Also, have data from an experiment with 13CO2 using a combined method with Licor 6400XT and Picarro. The experiment was conducted with one tropical species and measured the concentration of ¹³CO2 and ¹²CO2 to estimate rates of leaf respiration. All the files included in this data package are in .csv format with additional metadata spreadsheets in Excel file formats.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2023

Leaf gas exchange, spectral reflectance and leaf composition, BIONTE, Brazil, 2022

Leaf traits measured at the top of the canopy on 10 species at the BIONTE experimental plot T1B4SB3, near Manaus, Brazil, in August and September, 2022. The aim of this study was to test the relationship between leaf water use efficiency and wood density. Ten tree species located in close proximity of each other (within 50 meters) were selected and classified by wood density (low or high). Sampling was carried out on top-of-canopy leaves accessed by an articulated boom lift. Survey gas exchange measurement were performed on attached leaves at various times during the day. Following gas exchange, the leaf was harvested, and measured for spectral reflectance, leaf water content, leaf mass per area and leaf carbon content and leaf nitrogen content. Additional leaves other than those used for gas exchange were also harvested from different branches on the same tree for spectral reflectance and leaf trait measurements. Data in this data package is presented in csv files, with metadata in csv and descriptive experimental protocols as pdf. Gas exchange data and metadata meets the requirements of the ESS-DIVE reporting format for leaf gas exchange data and metadata.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2024

Leaf gas exchange, leaf water potential and spectral reflectance, BIONTE, Brazil, 2023

Leaf traits measured at the top of the canopy on 30 tree species in the BIONTE experimental forest, near Manaus, Brazil, at three time points during August to November, 2023. The aim of this study was to test the relationship between leaf water use efficiency and wood density. Leaf gas exchange was measured on top-of-canopy leaves accessed by an articulated boom lift. Response curves (A-Ci and A-Q), and dark adapted respiration were measured on cut branches. Survey gas exchange measurements were performed on attached leaves at various times during the day. Following gas exchange, leaves were harvested, and measured for leaf water potential and spectral reflectance. Data in this data package is presented in csv files, with metadata in csv and descriptive experimental protocols as pdf. Gas exchange data and metadata meets the requirements of the ESS-DIVE reporting format for leaf-level gas exchange data and metadata.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2013

DoE Phase II SBIR: Spectrally-Assisted Vehicle Tracking

The goal of this Phase II SBIR is to develop a prototype software package to demonstrate spectrally-aided vehicle tracking performance. The primary application is to demonstrate improved target vehicle tracking performance in complex environments where traditional spatial tracker systems may show reduced performance. Example scenarios in Figure 1 include a) the target vehicle obscured by a large structure for an extended period of time, or b), the target engaging in extreme maneuvers amongst other civilian vehicles. The target information derived from spatial processing is unable to differentiate between the green versus the red vehicle. Spectral signature exploitation enables comparison of new candidate targets with existing track signatures. The ambiguity in this confusing scenario is resolved by folding spectral analysis results into each target nomination and association processes. Figure 3 shows a number of example spectral signatures from a variety of natural and man-made materials. The work performed over the two-year effort was divided into three general areas: algorithm refinement, software prototype development, and prototype performance demonstration. The tasks performed under this Phase II to accomplish the program goals were as follows: 1. Acquire relevant vehicle target datasets to support prototype. 2. Refine algorithms for target spectral feature exploitation. 3. Implement a prototype multi-hypothesis target tracking software package. 4. Demonstrate and quantify tracking performance using relevant data.

45 MILITARY TECHNOLOGY, WEAPONRY, AND NATIONAL DEF↗
DOE OSTI2017

Graph Learning in Knowledge Bases

The amount of text data has been growing exponentially in recent years, giving rise to automatic information extraction methods that store text annotations in a database. The current state-of-theart structured prediction methods, however, are likely to contain errors and it’s important to be able to manage the overall uncertainty of the database. On the other hand, the advent of crowdsourcing has enabled humans to aid machine algorithms at scale. As part of this project we introduced pi-CASTLE , a system that optimizes and integrates human and machine computing as applied to a complex structured prediction problem involving conditional random fields (CRFs). We proposed strategies grounded in information theory to select a token subset, formulate questions for the crowd to label, and integrate these labelings back into the database using a method of constrained inference. On both a text segmentation task over academic citations and a named entity recognition task over tweets we showed an order of magnitude improvement in accuracy gain over baseline methods.

97 MATHEMATICS AND COMPUTING↗
DOE OSTI2019

Aniak Energy Action Plan

In 2017, the Native Village of Aniak received a grant for the Aniak Energy Efficiency Project from the United States Department of Energy Office of Indian Energy policy and programs. The objective of the project was to reduce and stabilize energy costs in tribal buildings by setting energy efficiency improvement goals to provide direction for a future retrofit project. This final report begins with information about the community of Aniak and the project procedure. Chapters follow on each component of the project. The project team began by recording information about the seven project buildings as well as the Aniak Traditional Council’s goals for each building. Tribal staff also gathered baseline data on each building, including their energy use and general condition. An energy professional surveyed each building, prepared an energy model using AkWarm-C energy modeling software to determine energy-saving retrofits, and completed energy audits, summarized within this report. Each energy audit lists energy efficiency measures and energy conservation measures to pursue to improve the building and decrease its energy use. This report also contains three resources to help with the next steps in an energy retrofit project: a data monitoring plan to track the building condition and energy use through a retrofit project, a maintenance plan to facilitate energy conservation, and a list of funding and training opportunities that could provide resources for a retrofit or training for maintenance staff. Finally, readers can find materials from the outreach component of the project which demonstrated sustainable practices to the community. This Energy Action Plan marks the conclusion of the Aniak Energy Efficiency Project, but is meant to lead to the next step towards safe, comfortable, and energy efficient tribal buildings that will continue to benefit the community of Aniak for many years to come.

29 ENERGY PLANNING, POLICY, AND ECONOMY↗
DOE OSTI2019

Basic Research Needs Workshop on Compact Accelerators for Security and Medicine: Tools for the 21st Century, May 6-8, 2019

Accelerator-based radiation sources are ubiquitous tools for imaging and treatment in the fields of medicine and security that save millions of lives, impact billions of dollars of commercial goods annually, and fulfill a critical role in US national security. Today’s commercially available accelerator technology has fallen significantly behind the state-of-the-art. Advancing and transferring state-of-the-art compact accelerator technology into broader use holds the promise of achieving greater control, power, and automation, which can significantly enhance society’s ability to sense and control the world around us. The Workshop identified a wealth of opportunities to advance these technologies from today’s commercial baselines, largely based on half-century old developments, by employing emerging concepts in charged particle acceleration and radiation generation and detection, along with modern ways of thinking about and utilizing developments in systems engineering, advanced materials, supply chain management, manufacturing, advanced computation, energy storage, and artificial intelligence.

12 MANAGEMENT OF RADIOACTIVE AND NON-RADIOACTIVE W↗
DOE OSTI2024

First Demonstration of a Liquid Argon Time Projection Chamber Based Search for Intranuclear Neutron-Antineutron Transitions and Annihilation in $^{40}$Ar using the MicroBooNE Detector

We present a novel methodology to search for intranuclear neutron-antineutron transition ($n\rightarrow\bar{n}$) followed by $\bar{n}$-nucleon annihilation within an $^{40}$Ar nucleus, using the MicroBooNE liquid argon time projection chamber (LArTPC) detector. A discovery of $n\rightarrow\bar{n}$ transition or a new best limit on the lifetime of this process would either constitute physics beyond the Standard Model or greatly constrain theories of baryogenesis, respectively. The approach presented in this paper makes use of deep learning methods to select $n\rightarrow\bar{n}$ events based on their unique features and differentiate them from cosmogenic backgrounds. The achieved signal and background efficiencies are (70.22$\pm$6.04)\% and (0.0020$\pm$0.0003)\%, respectively. A demonstration of a search is performed with a data set corresponding to an exposure of $3.32 \times10^{26}\,$neutron-years, and where the background rate is constrained through direct measurement, assuming the presence of a negligible signal. With this approach, no excess of events over the background prediction is observed, setting a demonstrative lower bound on the $n\rightarrow\bar{n}$ lifetime in $^{40}$Ar of $\tau_{\textrm{m}} \gtrsim 1.

43 PARTICLE ACCELERATORS↗
DOE OSTI2024

Accelerating the identification of novel secondary metabolites in bioenergy plant root exudates using MicroED

Small molecule metabolites drive inter- and intraspecies communication and dependencies in diverse biological systems, yet a large proportion of these important chemical compounds remain uncharacterized in plants and microbes. Approximately 90% of the metabolites in root exudate profiles are unknown compounds, despite the importance of root exudate composition in plant-microbe interactions. We need advanced analytical capabilities that will support rapid discovery and structural elucidation of metabolites from biological samples that may be limited in quantity and high in complexity. To fill this gap, this project aimed to develop an integrated workflow involving metabolite extraction, separation, and crystallization from plant root exudates followed by characterization using nuclear magnetic resonance (NMR) spectroscopy, mass spectrometry, and microcrystal electron diffraction (MicroED). Using crude root exudates from sorghum, this project successfully developed higher throughput exudate fractionation strategies to obtain pure compounds for crystallization and identified crystals in multiple fractions that diffracted. Additional efforts to increase the throughput of high-quality crystal generation for MicroED, such as crystallization screening and crystallization chaperone exploration, will be needed to further advance root exudate metabolite identification. The overall optimized sample preparation process can then be integrated with the existing data collection and data analysis pipelines for MicroED at PNNL to facilitate more rapid natural product discovery.

59 BASIC BIOLOGICAL SCIENCES↗