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At least 145 records · Page 8

Final Report for "Community Petascale Project for Accelerator Science and Simulations"

This final report describes the work that has been accomplished over the past 5 years under the Community Petascale Project for Accelerator and Simulations (ComPASS) at Tech-X Corporation. Tech-X had been involved in the full range of ComPASS activities with simulation of laser plasma accelerator concepts, mainly in collaboration with LOASIS program at LBNL, simulation of coherent electron cooling in collaboration with BNL, modeling of electron clouds in high intensity accelerators, in collaboration with researchers at Fermilab and accurate modeling of superconducting RF cavity in collaboration with Fermilab, JLab and Cockcroft Institute in the UK.

43 PARTICLE ACCELERATORS↗

Understanding Event Trajectories Across Massive Temporal Datasets with Word Embeddings and Visualization

In collaboration with researchers from Virginia Tech, Savannah River National Laboratory has continued development of a natural language processing pipeline to identify and extract events of interest from massive open data sources in the domain of worldwide state-sponsored civil nuclear energy. The foundation of the pipeline is built on compass aligned temporal word embedding models, whereby contextual shifts are automatically identified by comparing keyword embedding vectors across successive time windows. Within the approach, a contextual shift indicates the occurrence of a potential event of interest. However, in such a broad topical domain that captures events at a global scale, across various life cycle stages, and across numerous different technology types, a user that is monitoring events may have broad interests in capturing many different event types with varying degrees of signal. As such, the quantity of information that may be returned from an automated event extraction pipeline can be substantial, requiring manual effort to sift through the information to identify any relevant bits of information. Therefore, a more streamlined workflow that aids in directing a user toward specific information at different points in time is necessary. The workflow presented here has been developed with this concept in mind, built on top of the initial prototype event extraction pipeline, whereby a user can analyze temporal text-based data sources at multiple different contextual levels to isolate key points in time and key subdomains captured within a data corpus. Using multiple corpuses that consist of approximately 7 million Tweets and 7 million news articles, the team has extended compass aligned temporal word embedding models to establish an interconnected and hierarchical structure that relates known key words of interest to documents, local topics (i.e., within a time window), and global topics across the corpuses. All of this information is packaged into a visual analytics system that is linked to the information extraction pipeline and enables a user to identify contextual information that describes the evolution of a high dimensional embedding space across time to isolate changes of interest and explore associated events. This report demonstrates the use of these analytics and a means to fuse information across multiple datasets.

97 MATHEMATICS AND COMPUTING↗

Characterizing Bioavailable Soil Nutrients Across Coastal Systems: Western Lake Erie and Chesapeake Bay

Terrestrial Aquatic Interfaces (TAIs), defined as where land meets water, exhibit important hydrological, biological, and biogeochemical dynamics and play a critical role in the Earth’s carbon cycle. Current Earth System Models improperly represent this role due to the complexity of these systems and the disproportionally large impact TAIs have relative to their area. To improve our predictive capacity of coastal system dynamics, a better understanding of carbon and nutrient cycling across TAI’s is needed. Coastal Observations, Mechanisms, and Predictions Across Systems and Scales (COMPASS) aims to achieve this through field observations and laboratory incubations throughout the Western Lake Erie and Chesapeake Bay regions. Here, we report on preliminary results from a soil characterization experiment across the WLE and CB regions. This experiment was conducted as part of the 2-year field, measurements, and experiments (FME) pilot study portion of COMPASS to provide initial baseline data for the sites and to characterize the spatial variability of our analytes. Soil samples were collected from three locations along the TAI transect (upland forest, transitional forest, and wetland) and analyzed for bioavailable nutrients using three types of extractions: (a) water extractions, (b) 2M KCl extractions, and (c) 1M NH4Cl extractions to analyze (a) water soluble organic carbon (WSOC), (b) ammonium and nitrate, and (c) base cations, including Ca, Mg, Na, K, and Fe. These analyses, in conjunction with other bulk physicochemical analyses, will help establish baseline understanding of these sites to drive future research and design focused experiments that will ultimately improve our predictive understanding of these freshwater and marine coastal TAIs and their response to short and long-term changes.

54 ENVIRONMENTAL SCIENCES↗

Plasma tomographic reconstruction from tangentially viewing camera with background subtraction

Light reflections are one of the main and often underestimated issues of plasma emissivity reconstruction in visible light spectral range. Metallic and other specular components of tokamak generate systematic errors in the optical measurements that could lead to wrong interpretation of data. Our analysis is performed at data from the tokamak COMPASS. It is a D-shaped tokamak with specular metallic vessel and possibility of the H-mode plasma. Data from fast visible light camera were used for tomographic reconstruction with background reflections subtraction to study plasma boundary. In this article, we show that despite highly specular tokamak wall, it is possible to obtain a realistic reconstruction. The developed algorithm shows robust results despite of systematic errors in the optical measurements and calibration. The motivation is to obtain an independent estimate of the plasma boundary shape.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

The reaction π{sup −}p → π{sup −}π{sup −}π{sup +}p: Development of the analysis methods and selected results

We present the description of the analysis methods and results of applying them to the exclusive diffractive reaction π{sup −}p → π{sup −}π{sup −}π{sup +}p of 50 · 10{sup 6} events measured with COMPASS detector. The large statistics of π{sup −}π{sup −}π{sup +} events enables the two-dimensional partial-wave analysis independently in 100 bins of m(3π) with 0.5 < m(3π) < 2.5 GeV/c{sup 2} and in 11 intervals of squared momentum transfer with 0.1 < t′ < 1 GeV{sup 2}/c{sup 2}. The partial-wave analysis sub-density matrix is the subject to further mass-dependent fits describing the data in terms of resonances in 3π system and coherent background contributions. The novel approach of extracting J{sup PC} = 0{sup ++}(π{sup +}π{sup −}){sub S} isobar amplitudes as model-free functions, different for several J{sup PC} 3π states, is used. It demonstrates the presence of processes π(1800) → f{sub 0}(980)π and π(1800) → f{sub 0}(1500)π as well as π{sub 2}(1880) → f{sub 0}(980)π and new narrow signal a{sub 1}(1420) → f{sub 0}(980)π, without any established shapes used for (π{sup +}π{sup −}){sub S} isobars. The presented analysis is subject to further development and refinements which currently take place.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

A Study of a Mini-Drift GEM Tracking Detector

In this paper, a GEM tracking detector with an extended drift region has been studied as part of an effort to develop new tracking detectors for future experiments at RHIC and for the Electron Ion Collider that is being planned for BNL or JLAB. The detector consists of a triple GEM stack with a 1.6 cm drift region that was operated in a mini TPC type configuration. Both the position and arrival time of the charge deposited in the drift region were measured on the readout plane which allowed the reconstruction of a short vector for the track traversing the chamber. The resulting position and angle information from the vector could then be used to improve the position resolution of the detector for larger angle tracks, which deteriorates rapidly with increasing angle for conventional GEM tracking detectors using only charge centroid information. Two types of readout planes were studied. One was a COMPASS style readout plane with 400 μm pitch XY strips and the other consisted of 2 × 10 mm 2 chevron pads. The detector was studied in test beams at Fermilab and CERN, along with additional measurements in the lab, in order to determine its position and angular resolution for incident track angles up to 45 degrees. Several algorithms were studied for reconstructing the vector using the position and timing information in order to optimize the position and angular resolution of the detector for the different readout planes. Finally, applications for large angle tracking detectors at RHIC and EIC are also discussed.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

Investigation of the spatial resolution of an online dose verification device

Purpose: The aim of this work is to characterize a new online dose verification device, COMPASS transmission detector array (IBA Dosimetry, Schwarzenbruck, Germany). The array is composed of 1600 cylindrical ionization chambers of 3.8 mm diameter, separated by 6.5 mm center-to-center spacing, in a 40 x 40 arrangement. Methods: The line spread function (LSF) of a single ion chamber in the detector was measured with a narrow slit collimator for a 6 MV photon beam. The 0.25 x 10 mm{sup 2} slit was formed by two machined lead blocks. The LSF was obtained by laterally translating the detector in 0.25 mm steps underneath the slit over a range of 24 mm and taking a measurement at each step. This measurement was validated with Monte Carlo simulation using BEAMnrc and DOSXYZnrc. The presampling modulation transfer function (MTF), the Fourier transform of the line spread function, was determined and compared to calculated (Monte Carlo and analytical) MTFs. Two head-and-neck intensity modulated radiation therapy (IMRT) fields were measured using the device and were used to validate the LSF measurement. These fields were simulated with the BEAMnrc Monte Carlo model, and the Monte Carlo generated incident fluence was convolved with the 2D detector response function (derived from the measured LSF) to obtain calculated dose. The measured and calculated dose distributions were then quantitatively compared using {chi}-comparison criteria of 3% dose difference and 3 mm distance-to-agreement for in-field points (defined as those above the 10% maximum dose threshold). Results: The full width at half-maximum (FWHM) of the measured detector response for a single chamber is 4.3 mm, which is comparable to the chamber diameter of 3.8 mm. The pre-sampling MTF was calculated, and the resolution of one chamber was estimated as 0.25 lp/mm from the first zero crossing. For both examined IMRT fields, the {chi}-comparison between measured and calculated data show good agreement with 95.1% and 96.3% of in-field points below {chi} of 1.0 for fields 1 and 2, respectively (with an average {chi} of 0.29 for IMRT field 1 and 0.24 for IMRT field 2). Conclusions: The LSF for a new novel online detector has been measured at 6 MV using a narrow slit technique, and this measurement has been validated by Monte Carlo simulation. The detector response function derived from line spread function has been applied to recover measured IMRT fields. The results have shown that the device measures IMRT fields accurately within acceptable tolerance.

61 RADIATION PROTECTION AND DOSIMETRY↗

SU-E-T-152: Error Sensitivity and Superiority of a Protocol for 3D IMRT Quality Assurance

Purpose: To test if the parameters included in our 3D QA protocol with current tolerance levels are able to detect certain errors and show the superiority of 3D QA method over single ion chamber measurements and 2D gamma test by detecting most of the introduced errors. The 3D QA protocol parameters are: TPS and measured average dose difference, 3D gamma test with 3mmDTA/3% test parameters, and structure volume for which the TPS predicted and measured absolute dose difference is greater than 6%. Methods: Two prostate and two thoracic step-and-shoot IMRT patients were investigated. The following errors were introduced to each original treatment plan: energy switched from 6MV to 10MV, linac jaws retracted to 15cmx15cm, 1,2,3 central MLC leaf pairs retracted behind the jaws, single central MLC leaf put in or out of the treatment field, Monitor Units (MU) increased and decreased by 1 and 3%, collimator off by 5 and 15 degrees, detector shifted by 5mm to the left and right, gantry treatment angle off by 5 and 15 degrees. QA was performed on each plan using single ion chamber, 2D ion chamber array for 2D gamma analysis and using IBA's COMPASS system for 3D QA. Results: Out of the three tested QA methods single ion chamber performs the worst not detecting subtle errors. 3D QA proves to be the superior out of the three methods detecting all of introduced errors, except 10MV and 1% MU change, and MLC rotated (those errors were not detected by any QA methods tested). Conclusion: As the way radiation is delivered evolves, so must the QA. We believe a diverse set of 3D statistical parameters applied both to OAR and target plan structures provides the highest level of QA.

07 ISOTOPE AND RADIATION SOURCES↗

Modern trends in methods of charged particle identification at high energies

The survey is devoted to methods of charged particle identification at high energies that are based on measurements of the angle of Cherenkov radiation (ring imaging Cherenkov counters — RICH), of time of flight (TOF) and propagation (TOP), and of ionization energy loss (dE / dx ). As an example, some operating spectrometers are considered (LHCb, ALICE, COMPASS, Belle, and BaBar) together with proposed ones (Belle-2 and PANDA) in which new achievements of recent years are introduced.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

QCD analysis of the Bjorken sum rule revisited

We present extended analysis of the polarized Bjorken sum rule using the four-loop expression for the coefficient function C{sub Bj}(α{sub s}) available now and the recent low Q{sup 2}-data from the Jefferson Lab and COMPASS experiments. We demonstrate that the perturbative series for the function C{sub Bj} gives a hint to its asymptotic nature manifesting itself in the region Q{sup 2} ≲ 1 GeV{sup 2}. It is confirmed by the considered integral model for the perturbative QCD correction. We analyze values of higher-twist terms extracted from the mentioned data and discuss the interplay between higher orders perturbative and higher-twist contributions. We extend our consideration to the Gross-Llewellyn Smith sum rule and investigate the relation between higher twist coefficients in these two sum rules.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Importance of fragmentation functions in determining polarized parton densities

New fragmentation functions (FFs) are extracted from a NLO QCD fit to the preliminary COMPASS data on pion and kaon multiplicities. It is shown that the new kaon FFs are very different from those of De Florian et al. (DSS) and Hirai et al. (HKNS). The sensitivity of the extracted polarized PDFs to the new FFs is discussed.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Chiral-odd TMDs in Drell-Yan processes

We calculate the Boer-Mulders function of the pion by applying the MIT bag model, and compare the result with that from the spectator model. We then study the azimuthal asymmetries contributed by the chiral-odd transverse momentum distributions in pion-nucleon Drell-Yan process at COMPASS and in proton-proton Drell-Yan process at RHIC, J-PARC, E906 and NICA.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Dipole polarizabilities of charged pions

We discuss main experimental works, where dipole polarizabilities of charged pions have been determined. Possible reasons for the differences between the experimental data are discussed. In particular, it is shown that the account of the -meson gives a significant correction to the value of the polarizability obtained in the latest experiment of the COMPASS collaboration.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Edge Vibrations of Graphane Nanoribbons

Using the COMPASS force field, natural linear vibrations of graphane (graphene hydrogenated on both sides) nanoribbons are simulated. The frequency spectrum of a graphane sheet consists of three continuous intervals (low-frequency, mid-frequency, and narrow high-frequency) and two gaps between them. The construction of dispersion curves for nanoribbons with a zigzag and chair structure of the edges show that the frequencies of edge vibrations (edge phonons) can be present in the gaps of the frequency spectrum. In the first type of nanoribbons, two dispersion curves are in the low-frequency gap of the spectrum and four dispersion curves in the second gap. These curves correspond to phonons moving only along the nanoribbon edges (the mean depth of their penetration toward the nanoribbon center does not exceed 0.15 nm).

77 NANOSCIENCE AND NANOTECHNOLOGY↗

Data for Kim et al., "Variations in the optical and molecular composition of dissolved organic matter exported from coastal wetlands"

Knowledge about sources and composition of marsh-derived dissolved organic matter (DOM) is critical for understanding the role of marshes in coastal biogeochemical cycling and the fate of marsh-derived DOM in the ocean. To investigate tidal variability in composition of marsh-derived DOM, Kim et al. examined the optical and molecular characteristics of hourly surface water samples at three tidal creeks in the Chesapeake Bay. Groundwater samples along the terrestrial landscape gradient as well as estuarine water from the adjacent estuary at each site were also collected to help resolve sources of surface water DOM. Samples were collected in summer 2024 at three sites – SWH: Sweet Hall Marsh, GCW: Kirkpatrick Marsh, and GWI: Goodwin Islands – which are part of synoptic sites in the Chesapeake Bay region of the COMPASS-FME (Coastal Observations, Mechanisms, and Predictions Across Systems and Scales - Field, Measurements, and Experiments) project. Surface water samples were collected hourly over a 48-hour period at each site. Groundwater and estuarine water samples were collected once. This dataset includes- Surface water depth and salinity- Dissolved organic carbon (DOC) and total dissolved nitrogen (TDN) concentrations- Optical indices and relative composition of parallel factor analysis (PARAFAC) components- High resolution mass spectrometry data.

54 ENVIRONMENTAL SCIENCES↗

TEMPEST3 surface runoff water chemistry and organic matter composition

Coastal flooding, driven by storm surges and sea level rise, can mobilize organic matter (OM) via runoff, while introducing compositionally distinct OM (e.g., estuarine OM) into the system. To understand event-scale OM dynamics, we monitored source waters and surface runoff during an ecosystem-scale field manipulation experiment, TEMPEST (Terrestrial Ecosystem Manipulation to Probe the Effects of Storm Treatments), in June 2024. The TEMPEST experiment is part of the COMPASS-FME (Coastal Observations, Mechanisms, and Predictions Across Systems and Scales – Field, Measurements, and Experiments) project and designed to investigate biogeochemical and ecological impacts of freshwater and seawater flooding on coastal terrestrial-aquatic interface ecosystems by simulating freshwater and seawater storm events in two 2000m2 coastal upland forest plots (freshwater and brackish seawater plots). The temporal coverage of this dataset is during the TEMPESTⅢ event (June 11-13, 2024). This dataset contains: - Surface runoff discharge measured by flumes - Sensor data (specific conductivity, salinity, dissolved oxygen, and temperature) - Particle size distribution - Total suspended sediment concentrations (TSS), particulate and dissolved organic carbon (POC, DOC) concentrations, total nitrogen and total dissolved nitrogen (TN, TDN) concentrations - Bulk particulate and dissolved OM compositions (stable C and N isotopes of particulates and optical measurements of chromophoric dissolved OM) - High resolution mass spectrometry analysis data - Water isotope data All data files are plain-text CSV (comma-separated value), and no special software is required to read them.

COMPASS-FME↗

Unlocking the Potential of Magnetotactic Bacteria as Magnetic Hyperthermia Agents

Abstract Magnetotactic bacteria are aquatic microorganisms that internally biomineralize chains of magnetic nanoparticles (called magnetosomes) and use them as a compass. Here it is shown that magnetotactic bacteria of the strain Magnetospirillum gryphiswaldense present high potential as magnetic hyperthermia agents for cancer treatment. Their heating efficiency or specific absorption rate is determined using both calorimetric and AC magnetometry methods at different magnetic field amplitudes and frequencies. In addition, the effect of the alignment of the bacteria in the direction of the field during the hyperthermia experiments is also investigated. The experimental results demonstrate that the biological structure of the magnetosome chain of magnetotactic bacteria is perfect to enhance the hyperthermia efficiency. Furthermore, fluorescence and electron microscopy images show that these bacteria can be internalized by human lung carcinoma cells A549, and cytotoxicity studies reveal that they do not affect the viability or growth of the cancer cells. A preliminary in vitro hyperthermia study, working on clinical conditions, reveals that cancer cell proliferation is strongly affected by the hyperthermia treatment, making these bacteria promising candidates for biomedical applications.

59 BASIC BIOLOGICAL SCIENCES↗

New tool for kinematic regime estimation in semi-inclusive deep-inelastic scattering

We introduce a new phenomenological tool based on momentum region indicators to guide the analysis and interpretation of semi-inclusive deep-inelastic scattering measurements. The new tool, referred to as “affinity”, is devised to help visualize and quantify the proximity of any experimental kinematic bin to a particular hadron production region, such as that associated with transverse momentum dependent factorization. We apply the affinity estimator to existing HERMES and COMPASS data and expected data from Jefferson Lab and the future Electron-Ion Collider. We also provide an interactive notebook based on Machine Learning for fast evaluation of affinity.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗