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At least 145 records · Page 8

Design and Impacts of Land-Biogenic-Atmosphere Coupling in the NASA-Unified WRF (NU-WRF) Modeling System

Land-Atmosphere coupling is typically designed and implemented independently for physical (e.g. water and energy) and chemical (e.g. biogenic emissions and surface depositions)-based models and applications. Differences in scale, data requirements, and physics thus limit the ability of Earth System models to be fully coupled in a consistent manner. In order for the physical-chemical-biological coupling to be complete, treatment of the land in terms of surface classification, condition, fluxes, and emissions must be considered simultaneously and coherently across all components. In this study, we investigate a coupling strategy for the NASA-Unified Weather Research and Forecasting (NU-WRF) model that incorporates the traditionally disparate fluxes of water and energy through NASA's LIS (Land Information System) and biogenic emissions through BEIS (Biogenic Emissions Inventory System) and MEGAN (Model of Emissions of Gases and Aerosols from Nature) into the atmosphere. In doing so, inconsistencies across model inputs and parameter data are resolved such that the emissions from a particular plant species are consistent with the heat and moisture fluxes calculated for that land cover type. In turn, the response of the atmospheric turbulence and mixing in the planetary boundary layer (PBL) acts on the identical surface type, fluxes, and emissions for each. In addition, the coupling of dust emission within the NU-WRF system is performed in order to ensure consistency and to maximize the benefit of high-resolution land representation in LIS. The impacts of those self-consistent components on' the simulation of atmospheric aerosols are then evaluated through the WRF-Chem-GOCART (Goddard Chemistry Aerosol Radiation and Transport) model. Overall, this ambitious project highlights the current difficulties and future potential of fully coupled. components. in Earth System models, and underscores the importance of the iLEAPS community in supporting improved knowledge of processes and innovative approaches for models and observations.

Tan, Qian↗

The Evaluation of Chemical Decontamination for Contaminated Carbon Steel Scrap by Multiphase Treatment Process - 20249

There is a significant growth in the field of decommissioning of nuclear facilities due the fact that for a lot of them their end of life is nearing. In Taiwan, the government plans to steadily reduce the dependence on nuclear power and moves gradually towards a nuclear-free homeland. Therefore, the development of decommissioning technology becomes the significant issue for the next coming years. The decommissioning of a nuclear power plant is a long process and practical work including radiological surveys, decontamination, dismantling, and the subsequent waste management. Chemical decontamination is an important task in the decommissioning of nuclear power plants and is usually performed by circulating the chemical solution in selected systems or full systems in order to reduce dose levels. However, the decontamination of segmented metal parts is also considered to reduce the contamination to such levels that they may be disposed of at a lower classification or be unconditionally released, and it helps to achieve the goal of waste minimization and provide a more economical cost for disposal management. Chemical decontamination technology is used to remove the contaminated oxides deposited on the surface of metals by dissolving them with chemical mechanisms, such as chelation, acidic or alkaline dissolution, redox reaction and so on. Carbon steel is the major material used in systems and pipelines in the nuclear power plant, thus it is also commonly selected as the target to be decontaminated in the decommissioning process. In this study, the effectiveness of chemical decontamination is evaluated by using multiphase treatment process including the reduction and the oxidation steps. In the step of redox reaction, the oxidation state of the substance is very important. Especially metals of some oxidation states show solubility in water, which has a decisive influence on the chemical decontamination. The experiment of decontamination of metal scraps is carried out by the immersion method within a chemical solution. The relative operation parameters such as temperature, pH, and concentration of the chemical solution are recorded to demonstrate the effect of the decontamination process. (authors)

12 MANAGEMENT OF RADIOACTIVE AND NON-RADIOACTIVE W↗

Probabilisitc Geobiological Classification Using Elemental Abundance Distributions and Lossless Image Compression in Recent and Modern Organisms

Last year we presented techniques for the detection of fossils during robotic missions to Mars using both structural and chemical signatures[Storrie-Lombardi and Hoover, 2004]. Analyses included lossless compression of photographic images to estimate the relative complexity of a putative fossil compared to the rock matrix [Corsetti and Storrie-Lombardi, 2003] and elemental abundance distributions to provide mineralogical classification of the rock matrix [Storrie-Lombardi and Fisk, 2004]. We presented a classification strategy employing two exploratory classification algorithms (Principal Component Analysis and Hierarchical Cluster Analysis) and non-linear stochastic neural network to produce a Bayesian estimate of classification accuracy. We now present an extension of our previous experiments exploring putative fossil forms morphologically resembling cyanobacteria discovered in the Orgueil meteorite. Elemental abundances (C6, N7, O8, Na11, Mg12, Ai13, Si14, P15, S16, Cl17, K19, Ca20, Fe26) obtained for both extant cyanobacteria and fossil trilobites produce signatures readily distinguishing them from meteorite targets. When compared to elemental abundance signatures for extant cyanobacteria Orgueil structures exhibit decreased abundances for C6, N7, Na11, All3, P15, Cl17, K19, Ca20 and increases in Mg12, S16, Fe26. Diatoms and silicified portions of cyanobacterial sheaths exhibiting high levels of silicon and correspondingly low levels of carbon cluster more closely with terrestrial fossils than with extant cyanobacteria. Compression indices verify that variations in random and redundant textural patterns between perceived forms and the background matrix contribute significantly to morphological visual identification. The results provide a quantitative probabilistic methodology for discriminating putatitive fossils from the surrounding rock matrix and &om extant organisms using both structural and chemical information. The techniques described appear applicable to the geobiological analysis of meteoritic samples or in situ exploration of the Mars regolith. Keywords: cyanobacteria, microfossils, Mars, elemental abundances, complexity analysis, multifactor analysis, principal component analysis, hierarchical cluster analysis, artificial neural networks, paleo-biosignatures

Storrie-Lombardi, Michael C.↗

SHERLOC: Results of the first 350 sols of operations

On February 18th 2021, the Perseverance rover landed in Jezero crater, Mars. This site was chosen because orbiter data analysis provides evidence that the crater hosted a stream-fed lake during the Martian Noachian period. The Octavia Butler landing site is located ~1.9 km east of the remnants of a river delta. Deltaic and lacustrine sediments can preserve biosignatures, making Jezero crater a prime target for Mars sample return science. One of the seven instruments on Perseverance’s science payload is SHERLOC –Scanning Habitable Environments with Raman and Luminescence for Organics and Chemicals. SHERLOC combines fluorescence and Raman spectroscopy with microscopic imaging to analyze surface material to better understand the history of the aqueous environments recorded in the rocks of Jezero crater and to search for potential biosignatures. SHERLOC imaging obtains high spatial resolution images of geological targets to identify grain-scale structure and texture. SHERLOC spectroscopy enables high-sensitivity detection, characterization, and spatially resolved correlation of trace organic materials. Native fluorescence emissions from aromatic organic species allow for detection and classification of aromatic organic molecules, whereas Raman scattered photons from molecules allow identification of functional groups of organics, chemicals, and minerals. In the first 300 sols, SHERLOC has analyzed 3 natural surfaces, and 5 abraded rock patches created during the Crater Floor Campaign within Jezero crater. SHERLOC has been able to identify phosphates, amorphous/microcrystalline silicate (AMS), olivine, sulfates, and carbonates in abraded patches in the green zone campaign within Jezero Crater Máaz and Séítah formations. Within these detections we have begun to tell the story of what this crater was like when it was full of liquid water over 3 billion years ago. In each of these samples we have identified fluorescence features that are likely aromatic organics native to the rock interiors. We have identified multiple unique fluorescence signatures, within each of the abraded patches. The organic signatures have either been widely distributed over an extended area, which is probably due to planetary wide dust, or have spatially resolved locations that are collocated with different mineral signatures. Note: Additional information available on attachment.

L. W. Beegle↗

Ionic Liquid Engineering in Perovskite Photovoltaics

Over the past decade, perovskite photovoltaics have approached other currently available technologies and proven to be the most prospective type of solar cells. Although the many-sided research in this very active field has generated consistent results with regard to their undisputed consistently increasing power conversion efficiency, it also produced several rather contradictory opinions. Among other important details, debate surrounding their proneness to surface degradation and poor mechanical robustness, as well as the environmental footprint of this materials class, remains a moot point. The application of ionic liquids appears as one of the potential remedies to some of these challenges due to their high conductivity, the opportunities for chemical “tuning” of the structure, and relatively lower environmental footprint. This article provides an overview, classification, and applications of ionic liquids in perovskite solar cells. Here, we summarize the use and role of ionic liquids as versatile additives, solvents, and modifiers in perovskite precursor solution, in charge transport layer, and in interfacial and stability engineering. Finally, challenges and the future prospects for the design and/or selection of ionic liquids with a specific profile that meets the requirements for next-generation highly efficient and stable perovskite solar cells are proposed.

14 SOLAR ENERGY↗

Direct analysis of the broad-line SN 2019ein: connection with the core-normal SN 2011fe

Type Ia supernovae (SNe Ia) are important cosmological probes and contributors to galactic nucleosynthesis, particularly of the iron group elements. To improve both their reliability as cosmological probes and to understand galactic chemical evolution, it is vital to understand the binary progenitor system and explosion mechanism. The classification of SNe Ia into Branch groups has led to some understanding of the similarities and differences among the varieties of observed SNe Ia. Branch groups are defined by the pseudo-equivalent widths of the two prominent Si ii lines, leading to four distinct groups: core-normal (CN), shallow-silicon, cool, and broad-line (BL). However, partly due to small sample size, little work has been done on the BL group. We perform direct spectral analysis on the pre-maximum spectra of the BL SN 2019ein, comparing and contrasting to the CN SN 2011fe. Both SN 2019ein and SN 2011fe were first observed spectroscopically within 2 d of discovery, allowing us to follow the spectroscopic evolution of both SNe in detail. We find that the optical depths of the primary features of both the CN and BL SNe are very similar, except that there is a Doppler shift between them. We further examine the BL group and show that for nine objects with pre-maximum spectra in the range (–6)–(–2) d with respect to B-maximum all the emission peaks of the Si ii λ6355 line of BL are blueshifted pre-maximum, suggesting a possible classification criterion.

79 ASTRONOMY AND ASTROPHYSICS↗

Nanomaterials in Extreme Environments: Fundamentals and Applications Rostislav A. Andrievski and Arsen V. Khatchoyan

Nanomaterials in Extreme Environments Rostislav A. Andrievski and Arsen V. Khatchoyan Springer, 2016 106 pages, $99.00 (e-book $69.99) ISBN 978–3-319–25331–2 This slim volume is an extensive review of our current understanding of the response of nanostructured materials to extreme operating conditions, such as high temperature, flux of high energy neutrons, high pressure, mechanical stress, and oxidizing environments. The emphasis is on metallic materials, especially Cu alloys. Graphene-based materials, fullerenes, polymeric materials, nano-glasses and glass-ceramics are not covered by this review. The book has six chapters including an introduction and a brief conclusion. The introduction documents the growth of scientific interest in nanostructured materials and stresses the need to study the behavior of nanomaterials under extreme conditions. This chapter also presents Herbert Gleiter’s classification of nanomaterials into twelve groups based on the shapes of the nanoscale features and chemical composition of the components of the nanostructure. The second chapter deals with the high temperature environment and the thermodynamics and kinetics of grain growth. The authors identify the lack of reliable thermodynamic data as a key limitation in this field. The discussion brings out the interplay of structural relaxation, redistribution of excess free volume, diffusion, and recrystallization in multicomponent nanostructures at elevated temperature. Chapter 3 focuses on the effects of ion and neutron irradiation on the structure and properties of nanomaterials. The authors do a good job of highlighting recent studies on the radiation tolerance of nanocrystalline oxides and rapid grain growth under irradiation. The material addresses both fission and fusion reactor applications. Chapter 4 reviews the effects of severe plastic deformation and cyclic loading on nanostructure formation and phase transformation. This chapter also explores the challenge of achieving high density while retaining nanostructural features during processing under extreme loads and high temperatures. Chapter 5 discusses the effects of corrosion on nanomaterials. The behavior of a variety of alloys and high melting point compounds in liquid media and high temperature oxidizing environments is reviewed. The concluding chapter identifies areas for further research. The book would have benefited from careful copy editing for use of the English language. Moreover, the excessive use of acronyms makes the text difficult to read. Each chapter ends with a section on the application of nanomaterials and a long list of references. The integration of theoretical approaches and simulation results with experimental data offers fresh insights into the behavior of nanomaterials. Overall, this book will serve as useful reference material for researchers interested in nanomaterials driven to extremes. Reviewer: Ram Devanathan is Technical Group Manager of Reactor Materials and Mechanical Design, Pacific Northwest National Laboratory, USA.

Devanathan, Ram↗

Classification and properties of iron meteorites

The paper describes the general requirements for a genetically significant scheme for classifying iron meteorites. Some of the properties which may be used to classify iron meteorites are reviewed, and a classification scheme based on Ga-Ni and Ge-Ni plots, taxonomic properties, and chemical properties is proposed. It is found that 95% of the irons can be assigned to a genetic group or an anomalous class.

Scott, E. R. D.↗

Apollo 14 regolith breccias - Different glass populations and their potential for charting space time variations

Apollo 14 regolith breccias (14313, 14307, 14301, 14049, 14047) have been found to have different populations of nonagglutinitic, mare-derived glasses. These variations appear to not only reflect different source regoliths but also different closure ages for these breccias. Based upon these different glass populations, 14301 is inferred to have a closure age sometime during the epoch of mare volcanism. All of the other four breccias were formed after the termination of mare volcanism with a possible age sequence from old to young of the following: 14307, 14313, 14049, 14047. Due to the relative simplicity of acquiring high-quality chemical data on large numbers of glasses by electron microprobe, mare glass populations allow: (1) classification of regolith breccias with respect to provenance and (2) estimation of their relative and absolute closure ages. The determination of (Ar-40)-(Ar-39) ages on individual glass spherules within breccias using the laser probe should in the future prove to be a promising extension of the present study.

Delano, John W.↗

Test Bed: Treatability of Hanford Tank Waste - 18501

In an effort to advance the Low Activity Waste Pretreatment System technology readiness level at the Hanford Site, the effectiveness of a critical technology element, sRF ion-exchange resin, was demonstrated in the selective removal of Cs-137 from 11.5 L of composited Hanford supernate tank waste. Prior to ion-exchange, solids filtration was performed on the tank waste composite. Between the time of filtrate collection and filtrate processing on the ion-exchange columns, additional solids had formed. These secondary solids resulted from the combination of supernates high in fluoride content with supernates high in phosphate content and the relatively short blend time. Samples were collected before, during and after the ion-exchange process for characterization of a full suite of constituents (inorganic, organic, and radionuclides) to aid in the classification of the cesium-removed waste for shipping, receiving, treatment, and disposal determinations. Following chemical analysis, the remaining 10.8 L (2.9 gal) of cesium-depleted waste was shipped to an off-site vendor for grout-encapsulation and eventual disposal at the Waste Control Specialists Federal Waste Disposal Facility in Andrews, Texas as low-level waste. (authors)

12 MANAGEMENT OF RADIOACTIVE AND NON-RADIOACTIVE W↗

Validation of numerical simulations of activation by neutron flux - 15038

The knowledge of the radionuclide content of radioactive waste is of utmost importance for safety and waste management reasons. Numerical simulations are used at EDF-CIDEN to anticipate the dismantling and the radioactive waste management. The activation scheme by neutron flux developed at EDF-CIDEN comprises four steps. First of all, a 3 dimensional description of the reactor, the chemical composition of each structure, and the neutron sources at nominal power rating conditions are used as the input data to simulate the neutron propagation and to generate a 3 dimensional multi energy group neutron flux distribution in nominal power rating conditions. Secondly, this output data is used with the chemical compositions (including impurities) and the history of the operating conditions to calculate the radiological inventory for each structure. Thirdly, according to the radioactive inventory of each component or sub-component, a waste classification can be made; the classification criteria are based on the levels of radioactivity and radiotoxicity of 143 radionuclides. Finally, comparisons between the calculated radioactive inventories and the results of radio-chemical analyses can be made. These comparisons are made with regards to the activation of 'standard' chemical elements (meaning radionuclides being perfectly modeled with no uncertainty about the chemical concentrations). The results, linked with 'standard' chemical elements, can be used to validate the calculation scheme, including the neutron propagation, the neutron activation and all the other associated simplified assumptions (geometry, history of irradiation, etc). For steel, activation of 'Fe' is retained, and for stainless steel, activation of 'Fe' 'Ni' are retained. Overall, the feedback from Chooz A (Pressurized Water Reactor) shows that numerical simulations produce a slight overestimation of 'Fe-55' and 'Ni-63'. The results linked with minor chemical elements or impurities allowed us to validate the use of the average measured compositions. (authors)

12 MANAGEMENT OF RADIOACTIVE AND NON-RADIOACTIVE W↗

Bulk Major and Trace Elemental Composition of an Aggregate Sample From Asteroid Bennu

On September 24, 2023, NASA’s OSIRIS-REx mission returned a capsule to Earth carrying material from asteroid Bennu. This event was the first time a U.S. mission delivered pristine samples from an asteroid and is the largest asteroid sample return to date. As these samples represent some of the oldest, most primitive, and pristine materials available to us, and which originate from a known and well-studied asteroid, they allow us a rare opportunity to gain a better understanding of the formation and evolution of our solar system. Key to understanding the material returned from asteroid Bennu is establishing its bulk chemical composition. Previous studies have shown that each chondrite group has a distinct elemental composition. For the carbonaceous chondrites specifically, each group exhibits a distinct pattern of moderately and highly volatile elemental depletions, relative to CI chondrites. CI chondrites are considered the most primitive chondrite group and broadly represent the solar photosphere composition. The two most striking features of these depletion patterns is that the moderately volatile element depletions increase with decreasing 50% condensation temperature and then plateau out at abundances that roughly correlate with matrix abundance. Due to these distinctive patterns, bulk elemental composition has become an important classification tool for establishing the different chondrite groups and the connections between them. As such, determining the bulk chemical composition of the Bennu aggregates will help to test two mission hypothesis: “Bennu’s bulk elemental composition reflects that of its main parent asteroid and is similar to the composition of the Sun, with depletions in moderately to highly volatile elements” and “Bennu’s dominant lithologies are comparable in bulk mineralogy, petrology, and composition to the most aqueously altered carbonaceous chondrites” . Furthermore as the carbonaceous and non-carbonaceous chondrites are thought to have likely formed in the inner and outer protoplanetary disk, respectively (e.g., [8]), determining the bulk chemical compositions of the Bennu aggregates will also help test the major mission hypothesis that “Bennu's parent body formed beyond the snow line by accretion of material in the pro-toplanetary disk” . Regarding chondrite formation, observed elemental patterns have been successfully used to model how the mixing of volatile-rich and volatile-poor chondritic components can produce the observed carbonaceous chondrites groups. They have also been significant in investigating how volatilization processes influenced chondrite formation. As such, establishing bulk chemical compositions of the pristine Bennu samples is vital for understanding the asteroid, and solar system formation. To begin this processes, we analyzed the bulk major and trace elemental compositions of Bennu aggregates.

P Koefoed↗

Center for Integrated Nanotechnologies (CINT) Chemical Release Modeling Evaluation

This evaluation documents the methodology and results of chemical release modeling for operations at Building 518, Center for Integrated Nanotechnologies (CINT) Core Facility. This evaluation is intended to supplement an update to the CINT [Standalone] Hazards Analysis (SHA). This evaluation also updates the original [Design] Hazards Analysis (DHA) completed in 2003 during the design and construction of the facility; since the original DHA, additional toxic materials have been evaluated and modeled to confirm the continued low hazard classification of the CINT facility and operations. This evaluation addresses the potential catastrophic release of the current inventory of toxic chemicals at Building 518 based on a standard query in the Chemical Information System (CIS).

77 NANOSCIENCE AND NANOTECHNOLOGY↗

Chapter 4 - Mechanical Fractionations of Biomass Feedstocks for Enhanced Pretreatment and Conversion. In the book Biomass Preprocessing and Pretreatments for Production of Biofuels: Mechanical, Chemical and Thermal Methods.

Living plant biomass consists of multiple types of tissues and organs, each performing unique and essential physical or biological functions in the living plant. Because of these differences in form and function, these tissues and organs can retain these unique physical and chemical properties after senescence or harvest. Properties such as ash composition, ash content, carbohydrate content, lignin content, density, and recalcitrance can vary widely between plant parts and tissues. Mechanical fractionation of biomass feedstocks has the potential to take advantage of these naturally occurring differences to produce physically or chemically unique fractions that have higher or lower value within specific biochemical or thermochemical conversion platforms. Mechanical fractionation techniques that have shown promise include density separations in air or liquid, size separations, and automated sorting. Density separations, such as air classification, separate based on particle density, size, and shape. Size separations are highly dependent upon size reduction techniques, however anatomical differences can affect particle size. The chemical and physical properties of the resulting fractions help determine their optimal use. These unique fractions can be used directly or treated as ingredients and blended with other feedstocks or fractions of feedstocks to meet cost, quality, or conversion specifications.

09 BIOMASS FUELS↗

A proposal for assessing study quality: Biomonitoring, Environmental Epidemiology, and Short-lived Chemicals (BEES-C) instrument

The quality of exposure assessment is a major determinant of the overall quality of any environmental epidemiology study. The use of biomonitoring as a tool for assessing exposure to ubiquitous chemicals with short physiologic half-lives began relatively recently. These chemicals present several challenges, including their presence in analytical laboratories and sampling equipment, difficulty in establishing temporal order in cross-sectional studies, short- and longterm variability in exposures and biomarker concentrations, and a paucity of information on the number of measurements required for proper exposure classification. To date, the scientific community has not developed a set of systematic guidelines for designing, implementing and interpreting studies of short-lived chemicals that use biomonitoring as the exposure metric or for evaluating the quality of this type of research for WOE assessments or for peer review of grants or publications. We describe key issues that affect epidemiology studies using biomonitoring data on short-lived chemicals and propose a systematic instrument – the Biomonitoring, Environmental Epidemiology, and Short-lived Chemicals (BEES-C) instrument – for evaluating the quality of research proposals and studies that incorporate biomonitoring data on short-lived chemicals. Quality criteria for three areas considered fundamental to the evaluation of epidemiology studies that include biological measurements of short-lived chemicals are described: 1) biomarker selection and measurement, 2) study design and execution, and 3) general epidemiological study design considerations. We recognize that the development of an evaluative tool such as BEES-C is neither simple nor non-controversial. We hope and anticipate that the instrument will initiate further discussion/debate on this topic.

54 ENVIRONMENTAL SCIENCES↗

Scaling methods for accelerating kinetic Monte Carlo simulations of chemical reaction networks

Various kinetic Monte Carlo algorithms become inefficient when some of the population sizes in a system are large, which gives rise to a large number of reaction events per unit time. In this work, we present a new acceleration algorithm based on adaptive and heterogeneous scaling of reaction rates and stoichiometric coefficients. The algorithm is conceptually related to the commonly used idea of accelerating a stochastic simulation by considering a subvolume λΩ (0 < λ < 1) within a system of interest, which reduces the number of reaction events per unit time occurring in a simulation by a factor 1/λ at the cost of greater error in unbiased estimates of first moments and biased overestimates of second moments. Our new approach offers two unique benefits. First, scaling is adaptive and heterogeneous, which eliminates the pitfall of overaggressive scaling. Second, there is no need for an a priori classification of populations as discrete or continuous (as in a hybrid method), which is problematic when discreteness of a chemical species changes during a simulation. The method requires specification of only a single algorithmic parameter, N c , a global critical population size above which populations are effectively scaled down to increase simulation efficiency. The method, which we term partial scaling, is implemented in the open-source BioNetGen software package. We demonstrate that partial scaling can significantly accelerate simulations without significant loss of accuracy for several published models of biological systems. Finally, these models characterize activation of the mitogen-activated protein kinase ERK, prion protein aggregation, and T-cell receptor signaling.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Chemical compositional study of 35 iron meteorites and its application in taxonomy

Structural and compositional data are reported as a guide to the classification of 35 iron meteorites. The Xinjiang iron meteorite, previously classified as III AB, is reclassified as III E on the basis of its lower Ga/Ni and Ge/Ni ratios, its wider, swollen kamacite bands, and the ubiquitous presence of haxonite, (Fe,Ni)22C. The Dongling (III CD) appears not to be a new meteorite, but to be paired with the Nantan. Four Antarctic iron meteorites, IAB Allan Hills A77250, A77263, A77289, and A77290, are classified as a paired meteorite because of their similarities in structure and in concentrations of various elements. It is shown that Cu shares certain properties with Ga and Ge, which makes them excellent taxonomic parameters.

Wang, D.↗

Snails In Silico: A Review of Computational Studies on the Conopeptides

Marine cone snails are carnivorous gastropods that use peptide toxins called conopeptides both as a defense mechanism and as a means to immobilize and kill their prey. These peptide toxins exhibit a large chemical diversity that enables exquisite specificity and potency for target receptor proteins. This diversity arises in terms of variations both in amino acid sequence and length, and in posttranslational modifications, particularly the formation of multiple disulfide linkages. Most of the functionally characterized conopeptides target ion channels of animal nervous systems, which has led to research on their therapeutic applications. Many facets of the underlying molecular mechanisms responsible for the specificity and virulence of conopeptides, however, remain poorly understood. In this review, we will explore the chemical diversity of conopeptides from a computational perspective. First, we discuss current approaches used for classifying conopeptides. Next, we review different computational strategies that have been applied to understanding and predicting their structure and function, from machine learning techniques for predictive classification to docking studies and molecular dynamics simulations for molecular-level understanding. We then review recent novel computational approaches for rapid high-throughput screening and chemical design of conopeptides for particular applications. We close with an assessment of the state of the field, emphasizing important questions for future lines of inquiry.

59 BASIC BIOLOGICAL SCIENCES↗