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DOE OSTI2024

Photometric redshifts and intrinsic alignments: Degeneracies and biases in the 3 × 2 pt analysis

We present a systematic study of cosmological parameter bias in weak lensing and large-scale structure analyses for upcoming imaging surveys induced by the interplay of intrinsic alignments (IA) and photometric redshift (photo-z) model misspecification error. We first examine the degeneracies between the parameters of the tidal alignment–tidal torquing (TATT) model for IA and of a photo-z model including a mean shift ( Δ z ¯ ) and variance ( σ z ) for each tomographic bin of lenses and sources, under a variety of underlying true IA behaviors. We identify strong degeneracies between: (1) the redshift scaling of the tidal alignment amplitude and the mean shift and variances of source bins, (2) the redshift scaling of the tidal torquing amplitude and the variance of the lowest- z source bin, and (3) the IA source density weighting and the mean shift and variance of several source bins. We then use this information to guide our exploration of the level of cosmological parameter bias which can be induced given incorrect modeling of IA, photo-z, or both. We find that marginalizing over all the parameters of TATT is generally sufficient to preclude cosmological parameter bias in the scenarios we consider. However, this does not necessarily mean that IA and photo-z parameters are themselves unbiased, nor does it mean that the best-fit model is a good fit to the data. We also find scenarios where the inferred parameters produce χ d . o . f . 2 values indicative of a good fit but cosmological parameter bias is significant, particularly when the IA source density weighting parameter is not marginalized over. Published by the American Physical Society 2024

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

DOE OSTI2024

Model-independent determination of the strong-phase difference between D 0 and D ¯ 0 → π + π − π + π − decays

Measurements of the strong-phase difference between D 0 and D ¯ 0 → π + π − π + π − are performed in bins of phase space. The study exploits a sample of quantum-correlated D D ¯ mesons collected by the BESIII experiment in e + e − collisions at a center-of-mass energy of 3.773 GeV, corresponding to an integrated luminosity of 2.93 fb − 1 . Here, D denotes a neutral charm meson in a superposition of flavor eigenstates. The reported results are valuable for measurements of the C P -violating phase γ (also denoted ϕ 3 ) in B ± → D K ± , D → π + π − π + π − decays, and the binning schemes are designed to provide good statistical sensitivity to this parameter. The expected uncertainty on γ arising from the precision of the strong-phase measurements, when applied to very large samples of B -meson decays, is around 1.5° or 2°, depending on the binning scheme. The binned strong-phase parameters are combined to give a value of F + 4 π = 0.746 ± 0.010 ± 0.004 for the C P -even fraction of D 0 → π + π − π + π − decays, which is around 30% more precise than the previous best measurement of this quantity. Published by the American Physical Society 2024

Ablikim, M.↗

DOE OSTI2022

An improved method to access initial states in relativistic heavy-ion collisions

Abstract Observables in heavy-ion collisions are generally categorized into centralities, which reflect an average over events within a range of impact parameters including a wide variety of initial-state configurations. A multiple binning method using spectator neutrons within each centrality has been shown to provide access to events with rare initial-state conditions. This work suggests an improvement in quantifying the difference between standard centrality and spectator neutron binning towards accessing the initial-state properties. A selection of events with higher initial-state density at a fixed participating nucleon number was observed to result in larger final-state particle production and smaller elliptic flow. The relative difference between observables in centrality and spectator binning shows reduced sensitivity for the observables dominated by impact parameter fluctuations in the initial state, such as triangular flow. This property renders the spectator binning method a good candidate for separating geometric contributions from random fluctuations in the initial state towards final-state observables.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

DOE OSTI2025

GenomeFace v1.0

GenomeFace is meta-genome binning software. Metagenomic binning, the process of grouping DNA sequences into taxonomic units, is critical for understanding the functions, interactions, and evolutionary dynamics of microbial communities. We propose a deep learning approach to binning using two neural networks, one based on composition and another on environmental abundance, dynamically weighting the contribution of each based on characteristics of the input data. Trained on over 43,000 prokaryotic genomes, our network for composition-based binning is inspired by metric learning techniques used for facial recognition. Using a task-specific, multi-GPU accelerated algorithm to cluster the embeddings produced by our network, our binner leverages marker genes observed to be universally present in nearly all taxa to grade and select optimal clusters of sequences from a hierarchy of candidates. We evaluate our approach on four simulated datasets with known ground truth. Our linear time integration of marker genes recovers more near complete genomes than state of the art but computationally infeasible solutions using them, while being over an order of magnitude faster. Finally, we demonstrate the scalability and acuity of our approach by testing it on three of the largest metagenome assemblies ever performed. Compared to other binners, we produced 47%-183% more near complete genomes. From these datasets, we find over the genomes of over 3000 new candidate species which have never been previously cataloged, representing a potential 4% expansion of the known bacterial tree of life.

Lettich, Richard [Lawrence Berkeley National Labor↗

DOE OSTI2022

High-dimensional discrete Fourier transform gates with a quantum frequency processor

The discrete Fourier transform (DFT) is of fundamental interest in photonic quantum information, yet the ability to scale it to high dimensions depends heavily on the physical encoding, with practical recipes lacking in emerging platforms such as frequency bins. In this article, we show that d -point frequency-bin DFTs can be realized with a fixed three-component quantum frequency processor (QFP), simply by adding to the electro-optic modulation signals one radio-frequency harmonic per each incremental increase in d . We verify gate fidelity F W > 0.9997 and success probability P W > 0.965 up to d = 10 in numerical simulations, and experimentally implement the solution for d = 3, utilizing measurements with parallel DFTs to quantify entanglement and perform tomography of multiple two-photon frequency-bin states. Our results furnish new opportunities for high-dimensional frequency-bin protocols in quantum communications and networking.

97 MATHEMATICS AND COMPUTING↗

DOE OSTI2021

Tidal Energy Resource Characterization, Bottom Lander Measurements, Cook Inlet, AK, 2021

These datasets are from tidal resource characterization measurements collected on the Terrasond High Energy Oceanographic Mooring (THEOM) from 1 July 2021 to 30 August 2021 (60 days) in Cook Inlet, Alaska. The lander was deployed at 60.7207031 N, 151.4294998 W in ~50 m of water. The dataset contains raw and processed data from the following two instruments: 1. A Nortek Signature 500 kHz acoustic Doppler current profiler (ADCP). Data were recorded in 4 Hz in the beam coordinate system from all 5 beams. Processed data has been averaged into 5 minutes bins and converted to the East-North-Up (ENU) coordinate system. 2. A Nortek Vector acoustic Doppler velocimeter (ADV). Data were recorded at 8 Hz in the beam coordinate system. Processed data has been averaged into 5 minutes bins and converted to the Streamwise - Cross-stream - Vertical (Principal) coordinate system. Turbulence statistics were calculated from 5-minute bins, with an FFT length equal to the bin length, and saved in the processed dataset. Data was read and analyzed using the DOLfYN (version 1.0.2) python package and saved in MATLAB (.mat) and netCDF (.nc) file formats. Files containing analyzed data (".b1") were standardized using the TSDAT (version 0.4.2) python package. NetCDF files can be opened using DOLfYN (e.g., `dat = dolfyn.load(''*.nc")`) or the xarray python package (e.g. `dat = xarray.open_dataset("*.nc"). All distances are in meters (e.g., depth, range, etc), and all velocities in m/s. See the DOLfYN documentation linked in the submission, and/or the Nortek documentation for additional details.

16 TIDAL AND WAVE POWER↗

DOE OSTI2025

Metagenome-assembled genomes from soil samples in control and warming plots in Blodgett Forest, CA (2014-2021)

The pathways of carbon transport and loss through and from soils—soil organic matter (SOM) depolymerization to dissolved organic carbon and mineralization to carbon dioxide (CO2)—are fundamentally driven by microbial activity, which is strongly regulated by environmental conditions. As part of LBNL (Lawrence Berkeley National Laboratory) TES (Terrestrial Ecosystem Science) Belowground Biogeochemistry Science Focus Area (SFA), we have established a novel whole-soil long-term warming experiment at the University of California (UC) Blodgett Forest Research Station (Sierra Nevada) in 2014, where we study the role of biogeochemical, microbial and geochemical process interactions in SOM decomposition and stabilization.Here, we present metagenome-assembled genomes (MAGs) for the bacterial and archaeal community from soil depth profiles collected from 2014 to 2021 from three paired control and warming plots. We collected soil samples across a range of depth profiles (spanning surface to 90 cm deep) from three paired control and warming plots from a temperate mixed forest in Northern California. Each paired plot had been subjected to experimental warming since June 2014 to simulate a predicted climate change scenario for northern California. 101 soil metagenomes were sequenced at JGI (Joint Genome Institute) and UCSF (University of California San Francisco) Center for Advanced Technology and can be found under the JGI (Joint Genome Institute) GOLD (Genomes Online Database) Sequencing project Gs0151586 and NCBI (National Center for Biotechnology Information) Projects PRJNA1225762 and PRJEB39497. Metagenomes were assembled using JGI (Joint Genome Institute) Metagenome Workflow (10.1128/mSystems.00804-20). For each metagenome, the assembled contigs were binned into genomes using 3 binning algorithms (cocacola, metabat, and maxbin) and the resulting bins were consolidated using dastool. The consolidated bins from all metagenomes were pooled, filtered by completeness (>50%) and contamination (<25%), and dereplicated at 99% ANI (average nucleotide identity) using dRep (https://github.com/MrOlm/drep).The dataset includes a zip file of 2321 MAG (Metagenome Assembled Genome) fasta files, the accession numbers for the underlying metagenomes, and a csv file with MAG (Metagenome Assembled Genome) quality metrics and taxonomic classification (GTDB -Genome Taxonomy Database-RS220). This dataset also includes a file-level metadata (flmd.csv) file that lists each file contained in the dataset with associated metadata and a data dictionary (dd.csv) file that contains column/row headers used throughout the files along with a definition, units, and data type. A sample metadata file (samples.csv) that contains site information has also been included.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2020

Neural MUSE Analysis

Researchers at Oak Ridge National Laboratory (ORNL) created data as part of the MUSE (Multi-Agency Urban Search Experiment Detector and Algorithm Test Bed) project simulating illicit nuclear materials located in various buildings along a road. In the simulation, a truck containing a radiation detector drives down the road gathering listmode data (counting the and energy of incident gamma radiation). Building materials, source shielding, driving speed, truck direction, truck location on the road, source type, and source placement are all varied between runs of the data set. This data was created using deterministic neutron transport and Monte Carlo methods through a combination of SCALE, MAVRIC, MCNP, and GADRAS. As part of a follow-on NA-22 project, two Kaggle competitions were created to determine the best algorithms for finding and identifying gamma sources in this simulated urban environment. The winning algorithm was neural network-based and had a test accuracy of 76.4% accuracy for source identification. This work seeks to build upon this work and improve the results through the application of novel machine learning techniques. As a first step, the data was classified by a simple Convolutional Neural Network (CNN) To accomplish this, the data was first preprocessed into “waterfall plots.” These plots are composed of energy vs count plots that are stacked vertically to show progression in time. The horizontal axis indicating the particle energy incorporated user defined bin spacing with options for in linear-, logarithmic-, square root-, and user-spaced bins. The z or color dimension showed the number of counts corresponding the energy-time combination. This data was then used to generate more data, by generating a local estimate of the mean of the distribution for a bin and then randomly re-sampling that bin from a Poisson distribution. Once all of this data was generated, it was fed into a well-known CNN architecture, ResNet50. The output layer of this model was removed and replaced with layers corresponding to the shape desired isotope outputs. The provided training data was used to train the classifier and the remaining testing data was used to evaluate the model. Results are soon to be forthcoming.

61 RADIATION PROTECTION AND DOSIMETRY↗

DOE OSTI2020

Cosmic-ray anisotropies in right ascension measured by the Pierre Auger Observatory

We present measurements of the large-scale cosmic-ray anisotropies in right ascension, using data collected by the surface detector array of the Pierre Auger Observatory over more than 14 years. We determine the equatorial dipole component, $\vec{d}_\perp$, through a Fourier analysis in right ascension that includes weights for each event so as to account for the main detector-induced systematic effects. For the energies at which the trigger efficiency of the array is small, the ``East-West'' method is employed. Besides using the data from the array with detectors separated by 1500 m, we also include data from the smaller but denser sub-array of detectors with 750 m separation, which allows us to extend the analysis down to $\sim 0.03$ EeV. The most significant equatorial dipole amplitude obtained is that in the cumulative bin above 8~EeV, $d_\perp=6.0^{+1.0}_{-0.9}$%, which is inconsistent with isotropy at the 6$\sigma$ level. In the bins below 8 EeV, we obtain 99% CL upper-bounds on $d_\perp$ at the level of 1 to 3 percent. At energies below 1 EeV, even though the amplitudes are not significant, the phases determined in most of the bins are not far from the right ascension of the Galactic center, at $\alpha_{\rm GC}=-94^\circ$, suggesting a predominantly Galactic origin for anisotropies at these energies. The reconstructed dipole phases in the energy bins above 4 EeV point instead to right ascensions that are almost opposite to the Galactic center one, indicative of an extragalactic cosmic ray origin.

79 ASTRONOMY AND ASTROPHYSICS↗

DOE OSTI2022

Halo Properties and Mass Functions of Groups/Clusters from the DESI Legacy Imaging Surveys DR9

Abstract Based on a large group/cluster catalog recently constructed from the DESI Legacy Imaging Surveys DR9 using an extended halo-based group finder, we measure and model the group–galaxy weak-lensing signals for groups/clusters in a few redshift bins within redshift range 0.1 ≤ z < 0.6. Here, the background shear signals are obtained based on the DECaLS survey shape catalog, derived with the F ourier _Q uad method. We divide the lens samples into five equispaced redshift bins and seven mass bins, which allow us to probe the redshift and mass dependence of the lensing signals, and hence the resulting halo properties. In addition to these sample selections, we also check the signals around different group centers, e.g., the brightest central galaxy, the luminosity-weighted center, and the number-weighted center. We use a lensing model that includes off-centering to describe the lensing signals that we measure for all mass and redshift bins. The results demonstrate that our model predictions for the halo masses, biases, and concentrations are stable and self-consistent among different samples for different group centers. Taking advantage of the very large and complete sample of groups/clusters, as well as the reliable estimations of their halo masses, we provide measurements of the cumulative halo mass functions up to redshift z = 0.6, with a mass precision at 0.03 ∼ 0.09 dex.

79 ASTRONOMY AND ASTROPHYSICS↗

DOE OSTI2020

Understanding and improving model representation of aerosol optical properties for a Chinese haze event measured during KORUS-AQ

KORUS-AQ was an international cooperative air quality field study in South Korea that measured local and remote sources of air pollution affecting the Korean Peninsula during May–June 2016. Some of the largest aerosol mass concentrations were measured during a Chinese haze transport event (24 May). Air quality forecasts using the WRF-Chem model with aerosol optical depth (AOD) data assimilation captured AOD during this pollution episode but overpredicted surface particulate matter concentrations in South Korea, especially PM 2.5 , often by a factor of 2 or larger. Analysis revealed multiple sources of model deficiency related to the calculation of optical properties from aerosol mass that explain these discrepancies. Using in situ observations of aerosol size and composition as inputs to the optical properties calculations showed that using a low-resolution size bin representation (four bins) underestimates the efficiency with which aerosols scatter and absorb light (mass extinction efficiency). Besides using finer-resolution size bins (8–16 bins), it was also necessary to increase the refractive indices and hygroscopicity of select aerosol species within the range of values reported in the literature to achieve better consistency with measured values of the mass extinction efficiency (6.7 m 2 g –1 observed average) and light-scattering enhancement factor (ƒ(RH)) due to aerosol hygroscopic growth (2.2 observed average). Furthermore, an evaluation of the optical properties obtained using modeled aerosol properties revealed the inability of sectional and modal aerosol representations in WRF-Chem to properly reproduce the observed size distribution, with the models displaying a much wider accumulation mode. Other model deficiencies included an underestimate of organic aerosol density (1.0 g cm –3 in the model vs. observed average of 1.5 g cm –3 ) and an overprediction of the fractional contribution of submicron inorganic aerosols other than sulfate, ammonium, nitrate, chloride, and sodium corresponding to mostly dust (17 %–28 % modeled vs. 12 % estimated from observations). These results illustrate the complexity of achieving an accurate model representation of optical properties and provide potential solutions that are relevant to multiple disciplines and applications such as air quality forecasts, health impact assessments, climate projections, solar power forecasts, and aerosol data assimilation.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2024

EPCAPE-PT-LANL Measurements: Scanning Mobility Particle Sizer

Coastal cities offer a unique environment for studying aerosol-cloud interactions and the effects of urban emissions on cloud properties. As part of the Eastern Pacific Cloud Aerosol Precipitation Experiment (EPCAPE), the Partitioning Thrust by Los Alamos National Laboratory (EPCAPE-PT-LANL) was conducted. Our campaign focused on measuring the optical and chemical properties of aerosols and their interactions within marine stratocumulus clouds in La Jolla, California. EPCAPE-PT-LANL enhances the primary goals of EPCAPE through innovative observations of vapor-phase transitions between aerosols and cloud droplets, the impact of black carbon on aerosol-cloud dynamics, and the effects of cloud processing on aerosol optical properties. Instrument: Scanning Mobility Particle Sizer (TSI), DMA Classifier Model 3082 + CPC Detector Model 3752. Data Notes: The SMPS dataset is limited due to necessary instrument maintenance and subsequent extensive downtime. Data is only available from October 21 to November 8, 2023. Post November 22, 2023, the NanoScan instrument provided coverage for the latter half of the campaign. To ensure consistency, the data was resampled into uniform size bins ranging from 15 nm to 667 nm. This adjustment was required due to changes in size bins and the maximum diameter that occurred after maintenance and repairs. Multiple Charge Correction applied, Nanoparticle Agglomerate Mobility Analysis not applied, and Diffusion Correction applied. Header: - List [15 nm to 667 nm] middle of the size bin in nanometers: Data reports the concentration particles in this size bin per cubic centimeter, dN/dLog(dp). - CVI_Flag[bool]: A boolean flag indicating whether the Counterflow Virtual Impactor (CVI) was active (true) or inactive (false) during the measurement.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2021

Method for determining a histogram of variable sample rate waveforms

A computer-implemented method comprises receiving a plurality of sampled data points, each data point including a y value and a t value; defining an array of bins, each bin identified by a unique number and including histogram data for a range of y values; for each consecutive pair of data points including a current data point and a next data point, determining a corresponding one of a plurality of linear equations, each linear equation defining a line between the current data point and the next data point; for each line, determining an amount of time that the y value of the line is within the range of values for each bin from the current data point to the next data point; and adding the time to the histogram data for each bin.

Tohlen, Michael Aaron↗

DOE OSTI2022

Hadron spectroscopy of pseudoscalar and vector meson photoproduction using linearly polarised photons at CLAS

The field of hadron spectroscopy is informed by experiments which study excited states of the nucleon by detecting the decay products following excitation with a hadronic, leptonic or electromagnetic probe. Experiments using a polarised beam of photons provide an important contribution to the world data. This thesis describes the analysis of data from one such experiment, the CEBAF Large Acceptance Spectrometer at Jefferson Laboratory, Virginia, USA. In the experiment, an incident beam of electrons passes through a diamond radiator producing a linearly polarised photon beam of energy from 1.1 to 2.1 GeV on a liquid hydrogen target. The analysis method and results for two reaction channels are presented. In the first analysis, the polarisation observables {?, P, T, Ox, Oz} for the reaction ??? p ? K0 S ?+ are extracted simultaneously using likelihood sampling with Markov-Chain Monte-Carlo. The results are presented as angular distributions (cos ?K0S) for bins in photon energy E? for a total of 21 bins. The values extracted for T , Ox and Oz are a first measurement of these quantities for this reaction and the beam asymmetry (?) measurement supplements the one previous measurement for this quantity and extends the energy range over which it has been extracted. The measurement of the recoil polarisation, P, is consistent with previous measurements. In a second analysis, the spin density matrix elements (SDMEs) for ? p ? p ? are extracted using similar analysis techniques. The results are presented as angular distributions (cos ?? ) for bins in photon energy E? for a total of 24 bins. This work is the first to extract all nine SDMEs for the full angular range of the ? meson production. A comparison is made to the predictions of the Vector Meson Dominance (VMD) model and the results provide evidence for contributing processes other than VMD, particularly at more backward angles of the ? meson production. The data also indicate non-helicity conserving process in both the s-channel and the t-channel. The results from the first analysis have been passed to the Juelich-Bonn theory group and the effect of including the new data within their dynamical coupled channel model is described. Several nucleon resonances are affected and the impact on the pole positions, widths and photon decay amplitudes of the affected resonances is described.

Clark, Louise↗

DOE OSTI2020

Update on Full-Scale Retrieval and Transfer System Testing for Pneumatic Conveyance of High-Level Calcine Waste - 20241

The Idaho National Laboratory processed spent nuclear fuel from 1953 to 1994. The process used solvent extraction to separate uranium, resulting in a liquid waste. A calcination process was used to convert the liquid waste to a high-level radioactive solid powder, referred to as calcine. The calcine is stored in stainless steel bins contained within concrete vaults called the Calcined Solids Storage Facilities. There are a total of seven CSSFs. The Calcine Retrieval Project is tasked with retrieving the calcine from the bins of CSSF 1 and pneumatically transferring it to the bins of CSSF 6. CSSF 1 was constructed to be a final calcine repository with no forethought of retrieval. It represents the greatest technical hurdle to calcine extraction of all the CSSFs. The challenges inherent with accessing the calcine, safely extracting it, and securely transporting it are copious and complex. Once the calcine is removed from CSSF1, that facility may be closed, reducing the footprint of waste storage at the INL. The same process for removing Calcine from CSSF1 may then be utilized to remove the calcine from the remaining CSSFs for final treatment and transport to a long-term storage facility. To overcome these inherent challenges with accessing CSSF 1 and extracting the calcine in a timely manner, a full-scale integrated mockup has been constructed. The mockup includes a full-size model of a concentric group of bins from CSSF 1 and a storage vessel representing CSSF 6. All essential elements of the transport design are represented in the Mockup, including motive and makeup air supply (air compressor), a replica of the CSSF6 cyclone, pre-filter, HEPA filter, vacuum pump, and retrieval control devices. Construction on the Mockup was completed in 2018 and testing began in February 2019. It has already proven very beneficial to the CRP. Experience in running the Mockup have aided in the development of retrieval and transport methodologies and the selection of process parameter values. It has also uncovered some unforeseen technological challenges and will continue to be valuable to the testing team as these hurdles are overcome and the process is proven effective. Operations personnel have also benefitted from its use as a training tool and will continue to use the Mockup as a simulator to reproduce problems encountered during extraction and transfer of Calcine from CSSF 1. The knowledge gained during this process will also be of continued benefit as future work is done to remove various types of calcine from the remaining CSSFs. The methodology of safe and secure transfer of radioactive material may be of benefit to others throughout the U.S. Department of Energy complex. (authors)

12 MANAGEMENT OF RADIOACTIVE AND NON-RADIOACTIVE W↗

DOE OSTI2020

Leveraging 3D CAD and Virtual Reality in Design of the Calcine Disposition Project - 20512

Fluor Idaho's Calcine Disposition Project (CDP) is leveraging the power of three-dimensional (3D) visualization, light detection and ranging (Lidar), and virtual reality to improve designs and worker safety. With the use of computer-aided design (CAD) modeling software, the CDP has created 3D models of the facility and systems to aid in the design, development, and operation of its retrieval and transfer system. This by itself is nothing new and has been done in industry for years. The CDP project however is taking this a few steps farther with the use of Lidar and virtual reality software. The CRP is tasked with removing a radioactive granular material from stainless steel bins located in concrete vaults that were constructed in the late 1950's and early 1960's. While construction drawings are available, it is not certain that the drawings are as-built or how accurate they truly are. Part of the project requires precise placement of equipment on to bins around multiple pipe, electrical lines, and bin stiffeners. Relying solely on the existing drawings and models created from these drawings is highly risky and prone to failure. The first step to determine the precise location and orientation of all obstructions in the vault the project will use a Lidar system to scan the vault structure and precisely locate all vault and bin components. Once this information is obtained, the data will be integrated into the CAD model. The model will then be verified, and a true as-built model developed. Precise component location, size, and orientation will be used for final design and placement of retrieval components. The second step will be to take the verified 3D model and scan data and import it into virtual reality software creating a virtual world. While some work on the project requires all work to be completed remotely due to high radiation fields, some areas have low enough radiation levels that personnel can enter and perform work. With the use of a virtual reality headset, operators and technicians will be able to enter our virtual world and become familiar with the surroundings and perform work prior to ever entering the radiation environment. This training is expected to pay dividends by improving worker efficiency, reducing errors, and improving confidence that the work can be performed as expected. It will play a key aspect in as low as reasonably achievable (ALARA) principles. An additional aspect in using the Lidar scans and virtual environment, is that it will give engineers and managers an opportunity to revisit the facility, especially radiation areas, at any time to obtain design information and measurements that may be costly or impossible to obtain once the facility transitions into radiation operations. (authors)

12 MANAGEMENT OF RADIOACTIVE AND NON-RADIOACTIVE W↗

DOE OSTI2026

Probing the matter-dominated expansion with multi-redshift Lyman-$α$ BAO from DESI DR2

We present a multi-redshift Baryon Acoustic Oscillations (BAO) analysis of the DESI Data Release 2 (DR2) Lyman-$α$ (Ly$α$) forest, splitting the forest auto-correlation and its cross-correlation with quasars into three redshift bins. We obtain BAO measurements at effective redshifts $z_{\rm eff} = 2.13$, $2.40$, and $2.81$ with $\sim2.0$--$2.5\%$ precision per bin in the radial and transverse directions, corresponding to $\sim1.1$--$1.2\%$ precision for the isotropic BAO measurement. Using the same data products and modeling framework as the DESI DR2 Ly$α$ BAO analysis, we validate the pipeline on $400$ synthetic datasets and find unbiased BAO recovery with well-calibrated uncertainties. The measurements show an increase in the isotropic dilation parameter $D_V/r_d$ from $30.26\pm0.39$ to $32.22\pm0.47$ and in the Alcock-Paczyński parameter $D_M/D_H$ from $3.96\pm0.15$ to $5.63^{+0.22}_{-0.24}$. The Hubble distance $D_H/r_d$ decreases from $9.40\pm0.20$ to $7.22\pm0.17$, providing a direct measurement of the expansion history consistent with $Λ$CDM and the expected matter-dominated scaling, with $H(z)\propto(1+z)^n$ giving $n=1.34\pm0.16$. The redshift split also provides a self-consistent measurement of clustering evolution: the Ly$α$ forest bias evolves as $(1+z)^γ$ with $γ_α=3.05\pm0.16$, the RSD parameter has a redshift evolution described by $γ_β=-0.97\pm0.26$, and the quasar bias evolves with $γ_Q=1.56\pm0.23$, consistent with independent quasar clustering measurements. Combining these three-bin BAO measurements with DESI DR2 galaxy and quasar BAO measurements yields cosmological constraints consistent with the single-bin Ly$α$ BAO analysis in flat $Λ$CDM and $w_0w_a$CDM and improves curvature constraints by $\sim12\%$ in $Λ$CDM$+Ω_\mathrm{K}$.

Herrera-Alcantar, Hiram K. [Paris, Inst. Astrophys↗

DOE OSTI2021

Impact of BBDuk metagenomic read trimming and decontamination

Background Investigators using metagenomic sequencing to study their microbiomes are often provided data that has been trimmed and decontaminated or do it themselves without knowing the effect these procedures can have on their downstream analyses. Here we evaluated the impact that JGI trimming and decontamination procedures had on assembly and binning metrics, placement of metagenome assembled genomes into species trees, and functional profiles of metagenome-assembled genomes (MAGs) extracted from twenty three complex rhizosphere metagenomes. We also investigated how more aggressive trimming impacts these binning metrics. Results We found that JGI trimmed and decontamination of input reads had some significant impacts in assembly and binning metrics compared to raw reads, and that differences in placement of MAGs in species trees increased with decreasing completeness and contamination thresholds. More aggressive trimming beyond those used by JGI were found to reduce MAG counts. Conclusions Mild trimming and decontamination of metagenomics reads prior to assembly can change an investigator’s answer to the questions, “Who is there and what are they doing? However, mild trimming and decontamination of metagenomic reads with high quality scores is recommended for those who elect to do so.

59 BASIC BIOLOGICAL SCIENCES↗