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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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At least 145 records · Page 8
All sourcesNASA NTRSDOE OSTI
DOE OSTI2020

HSolo: Homography from a single affine aware correspondence

The performance of existing robust homography estimation algorithms is highly dependent on the inlier rate of feature point correspondences. In this paper, we present a novel procedure for homography estimation that is particularly well suited for inlier-poor domains. By utilizing the scale and rotation byproducts created by affine aware feature detectors such as SIFT and SURF, we obtain an initial homography estimate from a single correspondence pair. This estimate allows us to filter the correspondences to an inlier-rich subset for use with a robust estimator. Especially at low inlier rates, our novel algorithm provides dramatic performance improvements.

97 MATHEMATICS AND COMPUTING↗
DOE OSTI2022

Streptavidin Affinity Grids for the Preparation of Biological Samples for Cryogenic Electron Microscopy (CRADA Final Report)

Currently, cryo-EM is the most powerful tool for structural analysis of large biomacromolecules, but there are still problems in that biomacromolecules are denatured at the air-interface and their orientations are limited in a specific orientation. We solved this problem at LBL by developing a streptavidin-coated EM grid. Use of such affinity-binding grids can minimize exposure to air-interface by keeping biomacromolecules bound to streptavidin. It is urgently needed to make such grids readily available to the cryo-EM community, but they are somewhat difficult to make. The goal of the CRADA with Hummingbird company was to mass-produce the streptavidin grids so that they would become readily available to the cryo-EM community. Our contribution to the CRADA was to first help Hummingbird to replicate the manual process that we use, and this was completed successfully.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2025

Ising on $\mathbb{S}^2$-- The Affine Conjecture

We review the recent construction \cite{brower2024isingmodelmathbbs2} of the 2d Ising model on a triangulated sphere $\mathbb{S}^2$. Surprisingly, this led to a precise map of the lattice couplings to the target geometry in order to reach the conform field theory (CFT) in the continuum limit. For the integrable 2d Ising CFT, the map was found analytically \cite{Brower_2023}. Here we conjecture how this might be generalized. The discrete geometry is implemented by the piecewise flat triangulation introduced by Regge in 1960 for the Einstein Hilbert action \cite{Regge1961GeneralRW}. Then following our Ising example, we posit the existence of a smooth map of lattice couplings in affine parameters consistent with quantum correlators. A sequence of theoretical investigations and numerical simulations are recommended to test this conjecture. They begin with non-integrable CFT's -- the 2d $\phi^4$ theory on $\mathbb{S}^2$; the 3d Ising model on $\mathbb{S}^3$ and $\mathbb{R} \times \mathbb{S}^2$; QED3 on $\mathbb{R} \times \mathbb{S}^{2} $ as an intermediate step to 4d non-Abelian lattice gauge theory on $\mathbb{R} \times \mathbb{S}^3$.

Brower, Richard C. [Boston U.] (ORCID:000000028185↗
DOE OSTI2022

Crystal Structure of CYP3A4 Complexed with Fluorol Identifies the Substrate Access Channel as a High-Affinity Ligand Binding Site

Cytochrome P450 3A4 (CYP3A4) is a major human drug-metabolizing enzyme, notoriously known for its extreme substrate promiscuity, allosteric behavior, and implications in drug–drug interactions. Despite extensive investigations, the mechanism of ligand binding to CYP3A4 is not fully understood. We determined the crystal structure of CYP3A4 complexed with fluorol, a small fluorescent dye that can undergo hydroxylation. In the structure, fluorol associates to the substrate channel, well suited for the binding of planar polyaromatic molecules bearing polar groups, through which stabilizing H-bonds with the polar channel residues, such as Thr224 and Arg372, can be established. Mutagenesis, spectral, kinetic, and functional data confirmed the involvement but not strict requirement of Thr224 for the association of fluorol. Collectively, our data identify the substrate channel as a high-affinity ligand binding site and support the notion that hydrophobic ligands first dock to the nearby peripheral surface, before migrating to the channel and, subsequently, into the active site.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2023

Properties of Gaseous Deprotonated L-Cysteine S-Sulfate Anion [cysS-SO3]−: Intramolecular H-Bond Network, Electron Affinity, Chemically Active Site, and Vibrational Fingerprints

L-cysteine S-sulfate, Cys-SSO3H, and their derivatives play essential roles in biological chemistry and pharmaceutical synthesis, yet their intrinsic molecular properties have not been studied to date. In this contribution, the deprotonated anion [cysS-SO3]− was introduced in the gas phase by electrospray and characterized by size-selected, cryogenic, negative ion photoelectron spectroscopy. The electron affinity of the [cysS-SO3]• radical was determined to be 4.95 ± 0.10 eV. In combination with theoretical calculations, it was found that the most stable structure of [cysS-SO3]− (S1) is stabilized via three intramolecular hydrogen bonds (HBs); i.e., one O-H……N between the -COOH and -NH2 groups, and two N-H……O HBs between -NH2 and -SO3, in which the amino group serves as both HB acceptor and donor. In addition, a nearly iso-energetic conformer (S2) with the formation of an O-H……N-H……O-S chain-type binding motif competes with S1 in the source. The most reactive site of the molecule susceptible for electrophilic attacks is the linkage S atom. Theoretically predicted infrared spectra indicate that O-H and N-H stretching modes are the fingerprint region (2800 to 3600 cm−1) to distinguish different isomers. The obtained information lays out a foundation to better understand the transformation and structure–reactivity correlation of Cys-SSO3H in biologic settings.

74 ATOMIC AND MOLECULAR PHYSICS↗
DOE OSTI2025

Using DNA Affinity Purification sequencing (DAP-seq) to identify in vitro binding sites of transcription factors potentially involved in aromatic degradation

The genome-wide binding sites of 44 transcription factors from the aromatic metabolizing Alphaproteobacterium Novosphingobium aromaticivorans were identified using DNA Affinity Purification sequencing (DAP-seq). We report 32 of these transcription factors have at least one area of enrichment. These data will be valuable for better understanding of aromatic metabolism.

aromatic metabolism↗
NASA NTRS1963

Tabulated Values of Bond Dissociation Energies, Ionization Potentials, and Electron Affinities for Some Molecules Found in High-Temperature Chemical Reactions

Values of the bond dissociation energies, ionization potentials, and electron affinities that were taken from the literature are presented in tables for some monatomic, diatomic, and polyatomic molecules which are found in many high-temperature chemical reactions including combustion reactions. Much of the information came from literature published after 1950 which either reported experimental and theoretical energy values or gave a review of previous literature on the subject. In some cases values for the bond dissociation energies were calculated from recently published heats of formation.

IONIZATION POTENTIAL↗
NASA NTRS1972

Photodetachment of electrons from phosphide ion - The electron affinity of PH2.

Measurement of the relative cross section for photodetachment of electrons from PH2(-) in the wavelength region 725 to 1020 nm (1.71 to 1.22 eV). An ion cyclotron resonance spectrometer was used to generate, trap, and detect the negative ions, and two light sources were employed to study photodetachment: a 1000-W xenon arc lamp with a grating monochromator and a continuously tunable laser. A single sharp threshold in the cross-section curve was observed, and a detailed analysis yielded an electron affinity value of 1.25 plus or minus 0.03 eV.

Smyth, K. C.↗
NASA NTRS1972

Photodetachment of electrons from amide and arsenide ions - The electron affinities of NH2., and AsH2.

The relative cross section for the gas-phase photodetachment of electrons has been determined for NH2(-) in the wavelength region of 1195 to 1695 nm and for AsH2(-) in the region from 620 to 1010 nm. An ion cyclotron resonance spectrometer was used to generate, trap, and detect negative ions. A 1000-W xenon arc lamp with a grating monochromator was used as the light source, except for one series of experiments in which a tunable laser was employed. Single sharp thresholds were observed in both cross sections, and the following electron affinity values were determined: 0.744 (plus or minus 0.022) eV for NH2. and 1.27 (plus or minus 0.03) eV for AsH2.

Smyth, K. C.↗
NASA NTRS1972

Photodetachment of an electron from selenide ion - The electron affinity and spin-orbit coupling constant for SeH.

The relative cross section for the gas phase photodetachment of an electron from SeH(-) was determined in the wavelength region 428 to 578 nm. An ion cyclotron resonance spectrometer was used to generate, trap, and detect the negative ions, and a 1000-W xenon arc lamp with a grating monochromator was employed as the light source. The cross section exhibited two sharp thresholds, whose positions remained unchanged for the photodetachment of SeD(-). As a result of these thresholds, the electron affinity and the spin-orbit coupling constant were evaluated.

Smyth, K. C.↗
NASA NTRS1974

Affine transformations from aerial photos to computer compatible tapes

During the development of a project to estimate wheat production, it became necessary to pull data, corresponding to particular fields in a test site, off an ERTS computer compatible tape. Aerial photographs and topographic maps were on hand for the test site. A method was devised, using an affine transformation, to relate the aerial photographs or topographic maps to the tapes. One can thereby access data on the tape corresponding to regions covered by only a few pixels. The theory can be used for the registration of two tapes for the same area and for the geometric correction of images.

Peet, F. G.↗