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At least 145 records · Page 8

Tuned to Terrible: A Study of Parallel Particle Advection State of the Practice

The algorithms foundational to visualization are central to the production visualization tools running at computing centers around the world and consume tremendous amounts of finite, limited resources. We believe that understanding the performance characteristics of these algorithms is critical in being good stewards of computational centers' resources. In this paper, we report initial studies on one such foundational algorithm: parallel particle advection. We have performed an extensive parameter study of the de facto standard algorithm that is commonly used in parallel production visualization tools as well as for in situ visualization environments. Our study has shown that the default parameters used in this algorithm lead to generally poor results, and identify settings that optimized performance on the system in our parameter sweep.

97 MATHEMATICS AND COMPUTING↗

Verification of Advective Bar Elements Implemented in the Sierra/Aria Thermal Response Code

A thorough code verification effort has been performed on a reduced order, finite element model for 1D fluid flow convectively coupled with a 3D solid, referred to as the 'advective bar' model. The purpose of this effort was to provide confidence in the proper implementation of this model within the SIERRA/Aria thermal response code at Sandia National Laboratories. The method of manufactured solutions is applied so that the order of convergence in error norms for successively refined meshes and timesteps is investigated. Potential pitfalls that can lead to a premature evaluation of the model's implementation are described for this verification approach when applied to this unique model. As a result, through observation of the expected order of convergence, these verification tests provide evidence of proper implementation of the model within the codebase.

42 ENGINEERING↗

Parallel-In-Time Multigrid with Adaptive Spatial Coarsening for The Linear Advection and Inviscid Burgers Equations

We apply a multigrid reduction-in-time (MGRIT) algorithm to hyperbolic partial differential equations in one spatial dimension. This study is motivated by the observation that sequential time-stepping is a computational bottleneck when attempting to implement highly concurrent algorithms; thus parallel-in-time methods are desirable. MGRIT adds parallelism by using a hierarchy of successively coarser temporal levels to accelerate the solution on the finest level. In the case of explicit time-stepping, spatial coarsening is a suitable approach to ensure that stability conditions are satisfied on all levels, and it may be useful for implicit time-stepping by producing cheaper multigrid cycles. Unfortunately, uniform spatial coarsening results in extremely slow convergence when the wave speed is near zero, even if only locally. We present an adaptive spatial coarsening strategy that addresses this issue for the variable coefficient linear advection equation and the inviscid Burgers equation using first-order explicit or implicit time-stepping methods. Serial numerical results show this method offers significant improvements over uniform coarsening and is convergent for the inviscid Burgers equation with and without shocks. Parallel scaling tests on up to 128K cores indicate that run-time improvements over serial time-stepping strategies are possible when spatial parallelism alone saturates, and that scalability is robust for oscillatory solutions which change on the scale of the grid spacing.

97 MATHEMATICS AND COMPUTING↗

Code for Value Decomposition Graph Network and environment for AMR on linear advection

This is the code for the paper [Multi-Agent Reinforcement Learning for Adaptive Mesh Refinement](https://arxiv.org/abs/2211.00801), published at AAMAS 2023. It contains the implementation of a new algorithm, called Value Decomposition Graph Network (VDGN), for applying multi-agent reinforcement learning to the problem of adaptive mesh refinement (AMR). It also contains the implementation of a multi-agent environment for AMR on a linear advection problem. VDGN is the first learning algorithm to display anticipatory refinement behavior in AMR, and it outperforms local error threshold-based heuristic strategies.

Yang, Jiachen↗

Hierarchical model reduction driven by a proper orthogonal decomposition for parametrized advection-diffusion-reaction problems

This work combines the Hierarchical Model (HiMod) reduction technique with a standard Proper Orthogonal Decomposition (POD) to solve parametrized partial differential equations for the modeling of advection-diffusion-reaction phenomena in elongated domains (e.g., pipes). This combination leads to what we define as HiPOD model reduction, which merges the reliability of HiMod reduction with the computational efficiency of POD. Two HiPOD techniques are presented and assessed by an extensive numerical verification.

97 MATHEMATICS AND COMPUTING↗

Milestone Completion Report WBS 1.3.5.05 ECP/VTK-m FY17Q4 [MS-17/03-06] Key Reduce / Spatial Division / Basic Advect / Normals STDA05-4.

The FY17Q4 milestone of the ECP/VTK-m project includes the completion of a key-reduce scheduling mechanism, a spatial division algorithm, an algorithm for basic particle advection, and the computation of smoothed surface normals. With the completion of this milestone, we are able to, respectively, more easily group like elements (a common visualization algorithm operation), provide the fundamentals for geometric search structures, provide the fundamentals for many flow visualization algorithms, and provide more realistic rendering of surfaces approximated with facets.

97 MATHEMATICS AND COMPUTING↗

HyLiPoD: Parallel Particle Advection via a Hybrid of Lifeline Scheduling and Parallelization-Over-Data

Performance characteristics of parallel particle advection algorithms can vary greatly based on workload.With this short paper, we build a new algorithm based on results from a previous bake-off study which evaluated the performance of four algorithms on a variety of workloads. Our algorithm, called HyLiPoD, is a ''meta-algorithm,'' i.e., it considers the desired workload to choose from existing algorithms to maximize performance. To demonstrate HyliPoD's benefit, we analyze results from 162 tests including concurrencies of up to 8192 cores, meshes as large as 34 billion cells, and particle counts as large as 300 million. Our findings demonstrate that HyLiPoD's adaptive approach allows it to match the best performance of existing algorithms across diverse workloads.

high performance computing↗

Hierarchical Fractional Advection-Dispersion Equation (FADE) to Quantify Anomalous Transport in River Corridor over a Broad Spectrum of Scales: Theory and Applications

Fractional calculus-based differential equations were found by previous studies to be promising tools in simulating local-scale anomalous diffusion for pollutants transport in natural geological media (geomedia), but efficient models are still needed for simulating anomalous transport over a broad spectrum of scales. This study proposed a hierarchical framework of fractional advection-dispersion equations (FADEs) for modeling pollutants moving in the river corridor at a full spectrum of scales. Applications showed that the fixed-index FADE could model bed sediment and manganese transport in streams at the geomorphologic unit scale, whereas the variable-index FADE well fitted bedload snapshots at the reach scale with spatially varying indices. Further analyses revealed that the selection of the FADEs depended on the scale, type of the geomedium (i.e., riverbed, aquifer, or soil), and the type of available observation dataset (i.e., the tracer snapshot or breakthrough curve (BTC)). When the pollutant BTC was used, a single-index FADE with scale-dependent parameters could fit the data by upscaling anomalous transport without mapping the sub-grid, intermediate multi-index anomalous diffusion. Pollutant transport in geomedia, therefore, may exhibit complex anomalous scaling in space (and/or time), and the identification of the FADE’s index for the reach-scale anomalous transport, which links the geomorphologic unit and watershed scales, is the core for reliable applications of fractional calculus in hydrology.

97 MATHEMATICS AND COMPUTING↗

TEMPORAL VARIABILITY FROM THE TWO-COMPONENT ADVECTIVE FLOW SOLUTION AND ITS OBSERVATIONAL EVIDENCE

In the propagating oscillatory shock model, the oscillation of the post-shock region, i.e., the Compton cloud, causes the observed low-frequency quasi-periodic oscillations (QPOs). The evolution of QPO frequency is explained by the systematic variation of the Compton cloud size, i.e., the steady radial movement of the shock front, which is triggered by the cooling of the post-shock region. Thus, analysis of the energy-dependent temporal properties in different variability timescales can diagnose the dynamics and geometry of accretion flows around black holes. We study these properties for the high-inclination black hole source XTE J1550-564 during its 1998 outburst and the low-inclination black hole source GX 339-4 during its 2006–07 outburst using RXTE /PCA data, and we find that they can satisfactorily explain the time lags associated with the QPOs from these systems. We find a smooth decrease of the time lag as a function of time in the rising phase of both sources. In the declining phase, the time lag increases with time. We find a systematic evolution of QPO frequency and hard lags in these outbursts. In XTE J1550-564, the lag changes from hard to soft (i.e., from a positive to a negative value) at a crossing frequency (ν {sub c}) of ∼3.4 Hz. We present possible mechanisms to explain the lag behavior of high and low-inclination sources within the framework of a single two-component advective flow model.

79 ASTRONOMY AND ASTROPHYSICS↗

A comparison of numerical solutions of the advective equation

Second- and third-order finite-difference methods recently applied to problems in high-speed fluid flow are applied to the model advection equation cast in conservative form. The differencing methods considered use forward time differencing with both centered and preferential space differences employed in the predictor-corrector sequences. The free parameter required for stability in the third-order method is adjusted to cause the solution to be either minimum dispersive or minimum dissipative in nature. Results indicate that the third-order method using minimum dispersion is the most accurate method tested. Computer time requirements are approximately twice those needed for second-order techniques.

Anderson, D.↗

Numerical simulation of life cycles of advection warm fog

The formation, development and dissipation of advection warm fog is investigated. The equations employed in the model include the equation of continuity, momentum and energy for the descriptions of density, wind component and potential temperature, respectively, together with two diffusion equations for the modification of water-vapor mixing ratio and liquid-water mixing ratios. A description of the vertical turbulent transfer of heat, moisture and momentum has been taken into consideration. The turbulent exchange coefficients adopted in the model are based on empirical flux-gradient relations.

Hung, R. J.↗

Lognormality of gradients of advected scalars

The gradient of an advected scalar in turbulent flow is treated in a coordinate system moving with a fluid particle. This Lagrangian coordinate system is chosen to be rotating such that the gradient vector lies along the 1-axis at all times; the final results are independent of this particular coordinate system. In the absence of diffusion, the magnitude of the gradient at the position of the fluid particle is shown to be a lognormal random process. The action of diffusion is to reduce the probability density for the largest values of the gradient.

Hill, R. J.↗

Comparisons among second-order, fourth-order, and pseudospectral advection techniques in a mesoscale numerical model

The reported investigation is concerned with mesoscale squall-line simulation utilizing numerical techniques. Particular attention is given to fourth-order results and their implications for the dynamical evolution of mesoscale squall-line systems which contain severe local storms. An adiabatic inviscid set of prognostic equations is utilized in a z coordinate system for the fundamental experiment. The fourth-order advection is employed for all time-dependent equations. The Euler-backward time marching scheme is utilized with a 60 second time step. The horizontal mesh length is 42 km. Horizontal diffusion is accomplished by utilizing a smoother-desmoother. Lateral boundary conditions are designed to reduce the development of strong gradients in dependent variables near the boundaries by bringing interior values from the grid to the boundaries.

Kaplan, M.↗

Observations of the convective plume of a lake under cold-air advective conditions

Moderating effects of Lake Apopka, Florida, on downwind surface temperatures were evaluated under cold-air advective conditions. Point temperature measurements north and south of the lake and data obtained from a thermal scanner flown at 1.6 km indicate that surface temperatures directly downwind may be higher than surrounding surface temperatures by as much as 5 C under conditions of moderate winds (about 4 m/s). No substantial temperature effects were observed with surface wind speed less than 1 m/s. Fluxes of sensible and latent heat from Lake Apopka were calculated from measurements of lake temperature, net radiation, relative humidity, and air temperature above the lake. Bulk transfer coefficients and the Bowen ratio were calculated and found to be in agreement with reported data for nonadvective conditions.

Bill, R. G., Jr.↗

Hygroscopic chemicals and the formation of advection warm fog: A numerical simulation

The formation of advection fog is closely associated with the characteristics of the aerosol particles, including the chemical composition, mass of the nuclei, particle size, and concentration. Both macrophysical and microphysical processes are considered. In the macrophysical model, the evolution of wind components, water vapor content, liquid water content and potential temperature under the influences of vertical turbulent diffusion, turbulent momentum, and turbulent energy transfers are taken into account. In the microphysical model, the supersaturation effect is incorporated with the surface tension and hygroscopic material solution.

Hung, R. J.↗

A field study of air flow and turbulent features of advection fog

The setup and initial operation of a set of specialized meteorological data collection hardware are described. To study the life cycle of advection fogs at a lake test site, turbulence levels in the fog are identified, and correlated with the temperature gradients and mean wind profiles. A meteorological tower was instrumented to allow multiple-level measurements of wind and temperature on a continuous basis. Additional instrumentation was: (1)hydrothermograph, (2)microbarograph, (3)transmissometers, and (4)a boundary layer profiler. Two types of fogs were identified, and important differences in the turbulence scales were noted.

Connell, J. D.↗

Observations of the microclimate of a lake under cold air advective conditions

The moderating effects of Lake Apopka, Florida, on downwind surface temperatures were evaluated under cold air advective conditions. Point temperature measurements north and south of the lake and data obtained from the NOAA satellite and a thermal scanner flown at 1.6 km, indicate that, under conditions of moderate winds (approximately 4m/sec), surface temperatures directly downwind may be higher than surrounding surface temperatures by as much as 5 C. With surface wind speed less than 1m/sec, no substantial temperature effects were observed. Results of this study are being used in land use planning, lake level control and in agriculture for selecting planting sites.

Bill, R. G., Jr.↗

Numerical simulation of advection fog formation on multi-disperse aerosols due to combustion-related pollutants

The effects of multi-disperse distribution of the aerosol population are presented. Single component and multi-component aerosol species on the condensation/nucleation processes which affect the reduction in visibility are described. The aerosol population with a high particle concentration provided more favorable conditions for the formation of a denser fog than the aerosol population with a greater particle size distribution when the value of the mass concentration of the aerosols was kept constant. The results were used as numerical predictions of fog formation. Two dimensional observations in horizontal and vertical coordinates, together with time-dependent measurements were needed as initial values for the following physical parameters: (1)wind profiles; (2) temperature profiles; (3) humidity profiles; (4) mass concentration of aerosol particles; (5) particle size distribution of aerosols; and (6) chemical composition of aerosols. Formation and dissipation of advection fog, thus, can be forecasted numerically by introducing initial values obtained from the observations.

Hung, R. J.↗