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DOE OSTI2022

Upscaling Methane Flux From Plot Level to Eddy Covariance Tower Domains in Five Alaskan Tundra Ecosystems

Spatial heterogeneity in methane (CH 4 ) flux requires a reliable upscaling approach to reach accurate regional CH 4 budgets in the Arctic tundra. In this study, we combined the CLM-Microbe model with three footprint algorithms to scale up CH 4 flux from a plot level to eddy covariance (EC) tower domains (200 m × 200 m) in the Alaska North Slope, for three sites in Utqiaġvik (US-Beo, US-Bes, and US-Brw), one in Atqasuk (US-Atq) and one in Ivotuk (US-Ivo), for a period of 2013–2015. Three footprint algorithms were the homogenous footprint (HF) that assumes even contribution of all grid cells, the gradient footprint (GF) that assumes gradually declining contribution from center grid cells to edges, and the dynamic footprint (DF) that considers the impacts of wind and heterogeneity of land surface. Simulated annual CH 4 flux was highly consistent with the EC measurements at US-Beo and US-Bes. In contrast, flux was overestimated at US-Brw, US-Atq, and US-Ivo due to the higher simulated CH 4 flux in early growing seasons. The simulated monthly CH 4 flux was consistent with EC measurements but with different accuracies among footprint algorithms. At US-Bes in September 2013, RMSE and NNSE were 0.002 μmol m −2 s −1 and 0.782 using the DF algorithm, but 0.007 μmol m −2 s −1 and 0.758 using HF and 0.007 μmol m −2 s −1 and 0.765 using GF, respectively. DF algorithm performed better than the HF and GF algorithms in capturing the temporal variation in daily CH 4 flux each month, while the model accuracy was similar among the three algorithms due to flat landscapes. Temporal variations in CH 4 flux during 2013–2015 were predominately explained by air temperature (67–74%), followed by precipitation (22–36%). Spatial heterogeneities in vegetation fraction and elevation dominated the spatial variations in CH 4 flux for all five tower domains despite relatively weak differences in simulated CH 4 flux among three footprint algorithms. The CLM-Microbe model can simulate CH 4 flux at both plot and landscape scales at a high temporal resolution, which should be applied to other landscapes. Integrating land surface models with an appropriate algorithm provides a powerful tool for upscaling CH 4 flux in terrestrial ecosystems.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2023

Ectomycorrhizal effects on decomposition are highly dependent on fungal traits, climate, and litter properties: A model-based assessment. Dataset.

To simulate the effects of mycorrhizal fungi on soil organic matter cycling, we incorporated mycorrhizal processes into the Carbon, Organisms, Rhizosphere, and Protection in the Soil Environment (CORPSE) model to develop a new soil model Myco-CORPSE. The new model was calibrated and evaluated against soil measurements taken at temperate forests in New Hampshire (NH) and Georgia (GA). A series of scenario analysis were also conducted to explore the conditions under which ectomycorrhizal (ECM) N acquisition processes can induce different soil C accumulation in ECM systems compared to arbuscular (AM) systems.In this data package, we included:-The Python codes of the standard Myco-CORPSE model we developed: "Standard Myco_CORPSE python codes.zip". The main program is the "gradient_sim.py" which calculates the bulk soil microbes and CN content along a user defined gradient of clay, soil temperature, soil moisture and mycorrhizal dominance, and relies on two subprograms "CORPSE_deriv.py" and "CORPSE_integrate.py". "CORPSE_deriv.py" calculated the changes in all simulated soil stock within every time step and "CORPSE_integrate.py" integrate the changes in all simulated soil stock within simulated time period. The program "Plot.py" is used to plot the major outputs produced by the main program "gradient_sim.py".-The modified Python codes of Myco-CORPSE models with site-level environmental inputs (in NH and GA) used to conduct simulations in NH and GA sites: "NH_GA model simulations.zip". -The Python codes used to evaluate the Myco-CORPSE simulation outputs in NH and GA sites against site-level measurements: "Plot NH_GA simulation against measurements.zip". It includes both the evaluation Python code, the model outputs on NH and GA sites, and the measured soil properties in both sites.-The modified Python codes of Myco-CORPSE models "Scenario analysis_model simulations.zip" that is used to conduct scenario analysis of how different litter properties, mycorrhizal fungal traits, climate, and seasonal variation in temperature and vegetation phenology impact the mycorrhizal effects on soil CN properties. The sub file folder "Scenario analysis_litter traits" contains the codes for scenario analysis of different litter properties; The sub file folder "Scenario analysis_ECM types" contains the codes for scenario analysis of different ECM fungal traits; The sub file folder "Scenario analysis_climate&seasonality" contains the codes for scenario analysis of different climate and seasonalities;-"Scenario analysis_model results and plotting codes.zip" contains all the output files from the the scenario analysis of Myco-CORPSE model as described above and the plotting codes used to the generate the heatmaps and scatterplots shown in the manuscript "Ectomycorrhizal effects on decomposition are highly dependent on fungal traits, climate, and litter properties: A model-based assessment"The majority of the model outputs did not have specific geographic information or temporal coverage because the analysis we conducted are mainly hypothetical model simulations. We only provided geographic description, coordinates and temporal coverage for those soil measurements which we used for model evaluations (included in the "Plot NH_GA simulation against measurements.zip").

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2024

Thaw depth, soil moisture, and vegetation height, Teller and Kougarok sites, Seward Peninsula, Alaska, 2022

Thaw depth, soil moisture, and vegetation height sampled from locations on the Teller MM27, Kougarok MM80, and Kougarok MM82 NGEE-Arctic sites, Seward Peninsula, Alaska. These data were collected in support of the ongoing NGEE-Arctic and NASA ABoVE data synthesis work. Samples were collected in July 2022, including 6 transects covering the entire Teller MM27 watershed and 4 transects covering 4 thaw ponds at Kougarok MM80 and MM82. This data package includes sample information and thaw depth, soil moisture, vegetation height data (.csv). Metadata files include data descriptions (_dd.csv) for tabular data and file level metadata (.csv). The Next-Generation Ecosystem Experiments: Arctic (NGEE Arctic), was a research effort to reduce uncertainty in Earth System Models by developing a predictive understanding of carbon-rich Arctic ecosystems and feedbacks to climate. NGEE Arctic was supported by the Department of Energy's Office of Biological and Environmental Research. The NGEE Arctic project had two field research sites: 1) located within the Arctic polygonal tundra coastal region on the Barrow Environmental Observatory (BEO) and the North Slope near Utqiagvik (Barrow), Alaska and 2) multiple areas on the discontinuous permafrost region of the Seward Peninsula north of Nome, Alaska. Through observations, experiments, and synthesis with existing datasets, NGEE Arctic provided an enhanced knowledge base for multi-scale modeling and contributed to improved process representation at global pan-Arctic scales within the Department of Energy's Earth system Model (the Energy Exascale Earth System Model, or E3SM), and specifically within the E3SM Land Model component (ELM).

54 ENVIRONMENTAL SCIENCES↗

NASA NTRS1995

Global Analysis, Interpretation, and Modelling: First Science Conference

Topics considered include: Biomass of termites and their emissions of methane and carbon dioxide - A global database; Carbon isotope discrimination during photosynthesis and the isotope ratio of respired CO2 in boreal forest ecosystems; Estimation of methane emission from rice paddies in mainland China; Climate and nitrogen controls on the geography and timescales of terrestrial biogeochemical cycling; Potential role of vegetation feedback in the climate sensitivity of high-latitude regions - A case study at 6000 years B.P.; Interannual variation of carbon exchange fluxes in terrestrial ecosystems; and Variations in modeled atmospheric transport of carbon dioxide and the consequences for CO2 inversions.

Sahagian, Dork↗

NASA NTRS1993

Study of atmospheric and bidirectional effects on surface reflectance and vegetation index time series: Application to NOAA AVHRR and preparation for future space missions

The objectives of the investigation, namely 'to characterize the atmospheric and directional effects on surface reflectance and vegetation index using the First International Satellite Cloud Climatology Project (ISLCSP) Field Experiment (FIFE) data set, develop new algorithms to obtain better Advanced Very High Resolution Radiometer (AVHRR) indices, and define possible improvements for future satellite missions', were addressed in three separate, yet complementary studies. First, it was shown, from theoretical calculations, that visible and near infrared reflectances combined linearly at optimum (one or two) viewing angles relate linearly to the fraction of photosynthetically available radiation absorbed by plants, f(sub par), can be used independently of the type of foliage and substrate, eliminate the effects of sub-pixel spatial heterogeneity, and improve the accuracy of the f(sub par) estimates when compared to the Normalized Difference Vegetation Index, NDVI. Second, it was demonstrated that NDVI, even though it is not a linear combination of radiances or reflectances, can be spatially integrated without significant loss of information from scales of 300 to 1000 m. Third, AVHRR visible and near-infrared reflectances over the FIFE site, separating temporal and bidirectional components and determining the model parameters through an original iterative scheme was successfully modeled. It appears that NDVI generated from the top-of-atmosphere reflectances normalized by the bidirectional effects (as determined in the scheme) is a better vegetation index than maximum NDVI. Details about the three studies are presented.

Frouin, Robert↗

NASA NTRS1991

Semiannual progress report, April - September 1991

Research conducted during the past year in the climate and modeling programs has concentrated on the development of appropriate atmospheric and upper ocean models, and preliminary applications of these models. Principal models are a one-dimensional radiative-convective model, a three dimensional global climate model, and an upper ocean model. Principal applications have been the study of the impact of CO2, aerosols, and the solar constant on climate. Progress was made in the 3-D model development towards physically realistic treatment of these processes. In particular, a map of soil classifications on 1 degree by 1 degree resolution has now been digitized, and soil properties have been assigned to each soil type. Using this information about soil properties, a method has been developed to simulate the hydraulic behavior of the soils of the world. This improved treatment of soil hydrology, together with the seasonally varying vegetation cover, will provide a more realistic study of the role of the terrestrial biota in climate change. A new version of the climate model was created which follows the isotopes of water and sources of water throughout the planet.

Source record↗

DOE OSTI2022

Geologic Disposal Safety Assessment (GDSA) Biosphere Model Development

The Spent Fuel and Waste Science and Technology Campaign of the U.S. Department of Energy Office of Nuclear Energy, Office of Spent Fuel and Waste Disposition is conducting research and development on geologic disposal of spent nuclear fuel and high-level nuclear waste. This work includes the Geologic Disposal Safety Assessment (GDSA) program which is charged with development of generic deep geologic repository concepts and system performance assessment models. One part of the GDSA framework is the development of a biosphere model capable of assessing doses to potential receptors exposed to radionuclides released from geologic disposal sites. As part of the GDSA framework, a biosphere model compatible with the PFLOTRAN massively parallel subsurface flow and reactive transport code is under development. The PFLOTRAN model provides the radionuclide source term for the biosphere model. The GDSA Biosphere model then assesses the potential movement of radionuclides through the surface biosphere and the subsequent exposure to a human receptor living in the biosphere. The biosphere model includes pathways originating from the groundwater as well as pathways originating from surface water bodies that have a water exchange with a contaminated groundwater body. The pathways for human exposure include consumption of drinking water, irrigated crops, meat animals, aquatic vegetation, and animals, etc.; external exposure from irrigated ground surfaces, surface water bodies, recreational activities, etc.; and inadvertent exposures such as ingestion of contaminated soils or shower water, etc. The GDSA Biosphere model was designed to be flexible and generic in order to accommodate a variety of different sites and climate states. This presentation will present the on the purpose, design, and development progress of the GDSA Biosphere Model.

GDSA, biosphere, repository↗

DOE OSTI2020

Fire as a fundamental ecological process: Research advances and frontiers

Fire is a powerful ecological and evolutionary force that regulates organismal traits, population sizes, species interactions, community composition, carbon and nutrient cycling and ecosystem function. It also presents a rapidly growing societal challenge, due to both increasingly destructive wildfires and fire exclusion in fire–dependent ecosystems. As an ecological process, fire integrates complex feedbacks among biological, social and geophysical processes, requiring coordination across several fields and scales of study. Here, we describe the diversity of ways in which fire operates as a fundamental ecological and evolutionary process on Earth. We explore research priorities in six categories of fire ecology: (a) characteristics of fire regimes, (b) changing fire regimes, (c) fire effects on above–ground ecology, (d) fire effects on below–ground ecology, (e) fire behaviour and (f) fire ecology modelling. We identify three emergent themes: the need to study fire across temporal scales, to assess the mechanisms underlying a variety of ecological feedbacks involving fire and to improve representation of fire in a range of modelling contexts. As fire regimes and our relationships with fire continue to change, prioritizing these research areas will facilitate understanding of the ecological causes and consequences of future fires and rethinking fire management alternatives.

54 ENVIRONMENTAL SCIENCES↗

NASA NTRS1981

Remote sensing education at the University of British Columbia

The development, current status, and organization of the University of British Columbia's interdisciplinary graduate program in remote sensing are described. Specialized programs are tailored to meet student's needs and interest and can range from the theoretical development of technology (sensor development, modelling, and computer analysis) to specialized application of remote sensing in resource analysis such as the determination of vegetation damage, land classification, and land use. The courses and faculty members are listed.

Murtha, P. A.↗

NASA NTRS1988

Characterizing forest ecosystem dynamics through modelling and remote sensing observations

To gain a better understanding of northern/boreal forest dynamics over a range of spatial and temporal scales, an approach to integrate models of forest growth, soil processes and radiative transfer with remote sensing observations was developed. The integrated model and remote sensing can be used to examine descriptors of ecosystem dynamics. To examine the scaling of vegetation pattern from the local to the regional domain, distributions of area and perimeters of vegetation community associations were determined from satellite and aircraft images. Relationships between computed fractal dimensions (1.5 to 1.8) and succession history for managed and unmanaged areas are being explored.

Ranson, K. J.↗

NASA NTRS1990

Estimation of subpixel vegetation cover using red-infrared scattergrams

The bulk properties of discontinuous vegetation canopies are estimated at subpixel scales by applying the method of moments to a linear stochastic geometric model of canopy-soil reflectance and one set of multispectral observations without ground truth. The procedure involves the formulation of conditional moments for subsets of pixels that possess similar properties and can be identified through their common orientation in red-infrared scattergrams. The analysis is facilitated by assuming geometric similarity among the canopy elements and by formulating a sampling scale ratio in terms of the bulk geometric scales of the canopy and the pixel. Three versions of the method are demonstrated using two simulated scenes and an actual forested watershed for which aerial radiometric data and corresponding ground truth were obtained.

Jasinski, Michael F.↗

NASA NTRS1994

Active microwaves

Research on the use of active microwaves in remote sensing, presented during plenary and poster sessions, is summarized. The main highlights are: calibration techniques are well understood; innovative modeling approaches have been developed which increase active microwave applications (segmentation prior to model inversion, use of ERS-1 scatterometer, simulations); polarization angle and frequency diversity improves characterization of ice sheets, vegetation, and determination of soil moisture (X band sensor study); SAR (Synthetic Aperture Radar) interferometry potential is emerging; use of multiple sensors/extended spectral signatures is important (increase emphasis).

Evans, D.↗

NASA NTRS2001

Investigating Uncertainty in Predicting Carbon Dynamics in North American Biomes: Putting Support-Effect Bias in Perspective

A fundamental strategy in NASA's Earth Observing System's (EOS) monitoring of vegetation and its contribution to the global carbon cycle is to rely on deterministic, process-based ecosystem models to make predictions of carbon flux over large regions. These models are parameterized (that is, the input variables are derived) using remotely sensed images such as those from the Moderate Resolution Imaging Spectroradiometer (MODIS), ground measurements and interpolated maps. Since early applications of these models, investigators have noted that results depend partly on the spatial support of the input variables. In general, the larger the support of the input data, the greater the chance that the effects of important components of the ecosystem will be averaged out. A review of previous work shows that using large supports can cause either positive or negative bias in carbon flux predictions. To put the magnitude and direction of these biases in perspective, we must quantify the range of uncertainty on our best measurements of carbon-related variables made on equivalent areas. In other words, support-effect bias should be placed in the context of prediction uncertainty from other sources. If the range of uncertainty at the smallest support is less than the support-effect bias, more research emphasis should probably be placed on support sizes that are intermediate between those of field measurements and MODIS. If the uncertainty range at the smallest support is larger than the support-effect bias, the accuracy of MODIS-based predictions will be difficult to quantify and more emphasis should be placed on field-scale characterization and sampling. This talk will describe methods to address these issues using a field measurement campaign in North America and "upscaling" using geostatistical estimation and simulation.

Dungan, Jennifer L.↗

NASA NTRS2018

Global Changes in the Diurnal Cycle of Surface Ozone

Changing emissions of NOx and other ozone precursors drive trends in both production and loss of surface ozone, leading to surface ozone trends that differ according to the time of day. Consequently, the magnitude of the diurnal cycle in surface ozone is changing in several regions of the world. Changes in the diurnal cycle of ozone have implications for the metrics used to assess the impact of ozone on human health and vegetation, since different metrics are sensitive to different portions of the diurnal cycle. We use a high resolution model simulation to examine global changes in the magnitude of the diurnal cycle of O3 between 1980 and 2015. The simulation reproduces the negative trends in the tropospheric NO2 column over the eastern United States and Europe, and the positive trends over East Asia, seen by the Ozone Monitoring Instrument (OMI). It also gives a reasonable reproduction of the change in the diurnal cycle of surface ozone seen at rural sites in the eastern United States between the 1990s and 2000s. The simulation shows that the magnitude of the surface O3 diurnal cycle is increasing in regions with positive changes in NOx emissions, such as South and East Asia, and decreasing in regions with reductions in NOx emissions. It also shows changes in the diurnal cycle of the tropospheric ozone column, although these have fewer regions with statistically significant trends. These changes suggest that daily mean ozone is responding less than the mid-day ozone measured by the Total Ozone Mapping Spectrometer (TOMS) and OMI.

Trends↗

NASA NTRS2006

Aeolian Shear Stress Ratio Measurements within Mesquite-Dominated Landscapes of the Chihuahuan Desert, New Mexico, USA

A field study was conducted to ascertain the amount of protection that mesquite-dominated communities provide to the surface from wind erosion. The dynamics of the locally accelerated evolution of a mesquite/coppice dune landscape and the undetermined spatial dependence of potential erosion by wind from a shear stress partition model were investigated. Sediment transport and dust emission processes are governed by the amount of protection that can be provided by roughness elements. Although shear stress partition models exist that can describe this, their accuracy has only been tested against a limited dataset because instrumentation has previously been unable to provide the necessary measurements. This study combines the use of meteorological towers and surface shear stress measurements with Irwin sensors to measure the partition of shear stress in situ. The surface shear stress within preferentially aligned vegetation (within coppice dune development) exhibited highly skewed distributions, while a more homogenous surface stress was recorded at a site with less developed coppice dunes. Above the vegetation, the logarithmic velocity profile deduced roughness length (based on 10-min averages) exhibited a distinct correlation with compass direction for the site with vegetation preferentially aligned, while the site with more homogenously distributed vegetation showed very little variation in the roughness length. This distribution in roughness length within an area, defines a distribution of a resolved shear stress partitioning model based on these measurements, ultimately providing potential closure to a previously uncorrelated model parameter.

King, James↗

NASA NTRS1994

The Use of High Spectral Resolution Bands for Estimating Absorbed Photosynthetically Active Radiation (A Par)

Most remote sensing estimations of vegetation variables such as Leaf Area Index (LAI), Absorbed Photosynthetically Active Radiation (APAR), and phytomass are made using broad band sensors with a bandwidth of approximately 100 nm. However, high resolution spectrometers are available and have not been fully exploited for the purpose of improving estimates of vegetation variables. A study directed to investigate the use of high spectral resolution spectroscopy for remote sensing estimates of APAR in vegetation canopies in the presence of nonphotosynthetic background materials such as soil and leaf litter is presented. A high spectral resolution method defined as the Chlorophyll Absorption Ratio Index (CARI) was developed for minimizing the effects of nonphotosynthetic materials in the remote estimates of APAR. CARI utilizes three bands at 550, 670, and 700 nm with bandwidth of 10 nm. Simulated canopy reflectance of a range of LAI were generated with the SAIL model using measurements of 42 different soil types as canopy background. CARI obtained from the simulated canopy reflectance was compared with the broad band vegetation indices (Normalized Difference Vegetation Index (NDVI), Soil Adjusted Vegetation Index (SAVI), and Simple Ratio (SR)). CARI reduced the effect of nonphotosynthetic background materials in the assessment of vegetation canopy APAR more effectively than broad band vegetation indices.

Kim, Moon S.↗

DOE OSTI2024

Variations in Bedrock and Vegetation Cover Modulate Subsurface Water Flow Dynamics of a Mountainous Hillslope

Abstract Predicting the hydrological response of watersheds to climate disturbances requires a detailed understanding of the processes connecting hillslopes and streams. Using a network of soil moisture and temperature sensors, electrical resistivity tomography monitoring, and a weather station we assess the above and below‐ground processes driving the hydrological response of a hillslope during snowmelt and summer monsoon. The transect covers bedrock and vegetation gradients, with a steep upper part characterized by shallow bedrock, and gentle lower part underlain by colluvium. The main vegetation cover is conifers on the upper, and grass and veratrum on the lower part. Combined with a simplified hydrological model, we show that the thin soil layer of the steep slope acts as a preferential flow path, leading to mostly shallow lateral flow, interrupted by vertical flow, mostly at tree locations, and likely facilitated by flow along fractures and roots. Vertical flow and upstream‐driven groundwater dynamics are prevailing at the colluvium, presenting a very different hydrological behavior compared to the upper part. These results show that subsurface structure and features have a strong control on the hydrological response of a hillslope and that those can create considerably varying hydrological dynamics across small spatial scales.

54 ENVIRONMENTAL SCIENCES↗

NASA NTRS2008

Accessing and Utilizing Remote Sensing Data for Vectorborne Infectious Diseases Surveillance and Modeling

Background: The transmission of vectorborne infectious diseases is often influenced by environmental, meteorological and climatic parameters, because the vector life cycle depends on these factors. For example, the geophysical parameters relevant to malaria transmission include precipitation, surface temperature, humidity, elevation, and vegetation type. Because these parameters are routinely measured by satellites, remote sensing is an important technological tool for predicting, preventing, and containing a number of vectorborne infectious diseases, such as malaria, dengue, West Nile virus, etc. Methods: A variety of NASA remote sensing data can be used for modeling vectorborne infectious disease transmission. We will discuss both the well known and less known remote sensing data, including Landsat, AVHRR (Advanced Very High Resolution Radiometer), MODIS (Moderate Resolution Imaging Spectroradiometer), TRMM (Tropical Rainfall Measuring Mission), ASTER (Advanced Spaceborne Thermal Emission and Reflection Radiometer), EO-1 (Earth Observing One) ALI (Advanced Land Imager), and SIESIP (Seasonal to Interannual Earth Science Information Partner) dataset. Giovanni is a Web-based application developed by the NASA Goddard Earth Sciences Data and Information Services Center. It provides a simple and intuitive way to visualize, analyze, and access vast amounts of Earth science remote sensing data. After remote sensing data is obtained, a variety of techniques, including generalized linear models and artificial intelligence oriented methods, t 3 can be used to model the dependency of disease transmission on these parameters. Results: The processes of accessing, visualizing and utilizing precipitation data using Giovanni, and acquiring other data at additional websites are illustrated. Malaria incidence time series for some parts of Thailand and Indonesia are used to demonstrate that malaria incidences are reasonably well modeled with generalized linear models and artificial intelligence based techniques. Conclusions: Remote sensing data relevant to the transmission of vectorborne infectious diseases can be conveniently accessed at NASA and some other websites. These data are useful for vectorborne infectious disease surveillance and modeling.

Kiang, Richard↗