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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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At least 1,423 records · Page 79
All sourcesNASA NTRSDOE OSTI
DOE OSTI2024

Proteogenomic characterization of difficult-to-treat breast cancer with tumor cells enriched through laser microdissection

Abstract Background Breast cancer (BC) is the most commonly diagnosed cancer and the leading cause of cancer death among women globally. Despite advances, there is considerable variation in clinical outcomes for patients with non-luminal A tumors, classified as difficult-to-treat breast cancers (DTBC). This study aims to delineate the proteogenomic landscape of DTBC tumors compared to luminal A (LumA) tumors. Methods We retrospectively collected a total of 117 untreated primary breast tumor specimens, focusing on DTBC subtypes. Breast tumors were processed by laser microdissection (LMD) to enrich tumor cells. DNA, RNA, and protein were simultaneously extracted from each tumor preparation, followed by whole genome sequencing, paired-end RNA sequencing, global proteomics and phosphoproteomics. Differential feature analysis, pathway analysis and survival analysis were performed to better understand DTBC and investigate biomarkers. Results We observed distinct variations in gene mutations, structural variations, and chromosomal alterations between DTBC and LumA breast tumors. DTBC tumors predominantly had more mutations inTP53,PLXNB3, Zinc finger genes, and fewer mutations inSDC2,CDH1,PIK3CA,SVIL, andPTEN. Notably, Cytoband 1q21, which contains numerous cell proliferation-related genes, was significantly amplified in the DTBC tumors. LMD successfully minimized stromal components and increased RNA–protein concordance, as evidenced by stromal score comparisons and proteomic analysis. Distinct DTBC and LumA-enriched clusters were observed by proteomic and phosphoproteomic clustering analysis, some with survival differences. Phosphoproteomics identified two distinct phosphoproteomic profiles for high relapse-risk and low relapse-risk basal-like tumors, involving several genes known to be associated with breast cancer oncogenesis and progression, includingKIAA1522,DCK,FOXO3,MYO9B,ARID1A,EPRS,ZC3HAV1, andRBM14. Lastly, an integrated pathway analysis of multi-omics data highlighted a robust enrichment of proliferation pathways in DTBC tumors. Conclusions This study provides an integrated proteogenomic characterization of DTBC vs LumA with tumor cells enriched through laser microdissection. We identified many common features of DTBC tumors and the phosphopeptides that could serve as potential biomarkers for high/low relapse-risk basal-like BC and possibly guide treatment selections.

Oncology↗
NASA NTRS1984

Solute transport and the prediction of breakaway oxidation in gamma + beta Ni-Cr-Al alloys

The Al transport and the condition leading to breakaway oxidation during the cyclic oxidation of gamma + beta NiCrAl alloys have been studied. The Al concentration/distance profiles were measured after various cyclic oxidation exposures at 1200 C. It was observed that cyclic oxidation results in a decreasing Al concentration at the oxide/metal interface, maintaining a constant flux of Al to the Al2O3 scale. It was also observed that breakaway oxidation occurs when the Al concentration at the oxide/metal interface approaches zero. A numerical model was developed to simulate the diffusional transport of Al and to predict breakaway oxidation in gamma + beta NiCrAl alloys undergoing cyclic oxidation. In a comparison of two alloys with similar oxide spalling characteristics, the numerical model was shown to predict correctly the onset of breakaway oxidation in the higher Al-content alloy.

Nesbitt, J. A.↗
NASA NTRS1985

Generation of capillary instabilities by external disturbances in a liquid jet

The receptivity problem in a circular liquid jet is considered. A time harmonic axial pressure gradient is imposed on the steady, parallel flow of a jet of liquid emerging from a circular duct. Using a technique developed in plasma physics a casual solution to the forced problem is obtained over certain ranges of Weber number for a number of mean velocity profiles. This solution contains a term which grows exponentially in the downstream direction and can be identified with a capillary instability wave. Hence, it is found that the externally imposed disturbances can indeed trigger instability waves in a liquid jet. The amplitude of the instability wave generated relative to the amplitude of the forcing is computed numerically for a number of cases.

Leib, S. J.↗
NASA NTRS1986

Numerical solution of the separating flow due to an obstruction

The steady separated flow due to an obstruction in a two-dimensional channel is studied through the numerical solution of the Navier-Stokes equations using finite difference techniques. The characteristics of the separated flow behind the obstruction are obtained up to a Reynolds number of 1500. The flow patterns, vorticity contours and total pressure contours are presented. The effects of Reynolds number, height of obstruction, thickness of obstruction and the inlet velocity profile are investigated.

Nallasamy, M.↗
NASA NTRS1989

The stability of a compressible stratified shear layer

The stability of a shear layer under the effect of gravity is investigated using the compressible magnetohydrodynamic (MHD) equations, including an effective gravity term to represent the curvature effects of the flow and magnetic field line geometry. A general eigenmode equation is derived for a two-dimensional MHD fluid, and an energy-principle analysis to explain the effect of compressibility on the critical Richardson number is presented. For the case of a hyperbolic tangent shear flow and exponential density profile, it was found that, in the Boussinesq approximation, the compressibility raises the critical Richardson number from 1/4 to as much as 1/2, with the exact value depending on the value of the magnetic field at infinity. Under approximation of a strong asymptotic magnetic field, without invoking the Boussinesq approximation, it is shown both analytically and numerically that the density gradient terms cause the shear instability to be dispersive. The long-wavelength stability boundary for the Richardson number J = 0 is characterized by a normalized phase velocity c =

Wang, Z.↗
NASA NTRS1991

A 2-D oscillating flow analysis in Stirling engine heat exchangers

A two dimensional oscillating flow analysis was conducted, simulating the gas flow inside Stirling heat exchangers. Both laminar and turbulent oscillating pipe flow were investigated numerically for Re(max) = 1920 (Va = 80), 10800 (Va = 272), 19300 (Va = 272), and 60800 (Va = 126). The results are compared with experimental results of previous investigators. Also, predictions of the flow regime on present oscillating flow conditions were checked by comparing velocity amplitudes and phase differences with those from laminar theory and quasi-steady profile. A high Reynolds number k-epsilon turbulence model was used for turbulent oscillating pipe flow. Finally, performance evaluation of the K-epsilon model was made to explore the applicability of quasi-steady turbulent models to unsteady oscillating flow analysis.

Ahn, Kyung H.↗
NASA NTRS1991

A 2-D oscillating flow analysis in Stirling engine heat exchangers

A two-dimensional oscillating flow analysis was conducted, simulating the gas flow inside Stirling heat exchangers. Both laminar and turbulent oscillating pipe flow were investigated numerically for Re(max) = 1920 (Va = 80), 10800 (Va = 272), 19300 (Va = 272), and 60800 (Va = 126). The results are compared with experimental results of previous investigators. Also, predictions of the flow regime on present oscillating flow conditions were checked by comparing velocity amplitudes and phase differences with those from laminar theory and quasi-steady profile. A high Reynolds number k-epsilon turbulence model was used for turbulent oscillating pipe flow. Finally, performance evaluation of the K-epsilon model was made to explore the applicability of quasi-steady turbulent models to unsteady oscillating flow analysis.

Ahn, Kyung H.↗
NASA NTRS1996

The Effect of Strain Rate on the Evolution of Plane Wakes Subjected to Irrotational Strains

Direct numerical simulations of time-evolving turbulent plane wakes developing in the presence of irrotational plane strain applied at three different strain rates have been generated. The strain geometry is such that the flow is compressed in the streamwise direction and expanded in the cross-stream direction with the spanwise direction being unstrained. This geometry is the temporally evolving analogue of a spatially evolving wake in an adverse pressure gradient. A pseudospectral numerical method with up to 16 million modes is used to solve the equations in a reference frame moving with the irrotational strain. The initial condition for each simulation is taken from a previous turbulent self-similar plane wake direct numerical simulation at a velocity deficit Reynolds number, Re, of about 2,000. Although the evolutions of many statistics are nearly collapsed when plotted against total strain, there are some differences owing to the different strain rate histories. The impact of strain-rate on the wake spreading rate, the peak velocity deficit, the Reynolds stress profiles, and the flow structure is examined.

Rogers, Michael M.↗
NASA NTRS2008

Wear Mechanisms in Electron Sources for Ion Propulsion, 2: Discharge Hollow Cathode

The wear of the keeper electrode in discharge hollow cathodes is a major impediment to the implementation of ion propulsion onboard long-duration space science missions. The development of a predictive theoretical model for hollow cathode keeper life has long been sought, but its realization has been hindered by the complexities associated with the physics of the partially ionized gas and the associated erosion mechanisms in these devices. Thus, although several wear mechanisms have been hypothesized, a quantitative explanation of life test erosion profiles has remained incomplete. A two-dimensional model of the partially ionized gas in a discharge cathode has been developed and applied to understand the mechanisms that drove the erosion of the keeper in two long-duration life tests of a 30-cm ion thruster. An extensive set of comparisons between predictions by the numerical simulations and measurements of the plasma properties and of the erosion patterns is presented. It is found that the near-plume plasma oscillations, predicted by theory and observed by experiment, effectively enhance the resistivity of the plasma as well as the energy of ions striking the keeper.

hollow cathode↗
NASA NTRS2012

P161 Improved Impact of Atmospheric Infrared Sounder (AIRS) Radiance Assimilation in Numerical Weather Prediction

For over 6 years, AIRS radiances have been assimilated operationally into National (e.g. Environmental Modeling Center (EMC)) and International (e.g. European Centre for Medium-Range Weather Forecasts (ECMWF)), operational centers; assimilated in the North American Mesoscale (NAM) since 2008. Due partly to data latency and operational constraints, hyperspectral radiance assimilation has had less impact on the Gridpoint Statistical Interpolation (GSI) system used in the NAM and GFS. Objective of this project is to use AIRS retrieved profiles as a proxy for the AIRS radiances in situations where AIRS radiances are unable to be assimilated in the current operational system by evaluating location and magnitude of analysis increments.

Zavodsky, Bradley T.↗
NASA NTRS2016

NASA EOSDIS: Enabling Science by Improving User Knowledge

Lessons learned and impacts of applying these newer methods are explained and include several examples from our current efforts such as the interactive, on-line webinars focusing on data discovery and access including tool usage, informal and informative data chats with data experts across our EOSDIS community, data user profile interviews with scientists actively using EOSDIS data in their research, and improved conference and meeting interactions via EOSDIS data interactively used during hyper-wall talks and Worldview application. The suite of internet-based, interactive capabilities and technologies has allowed our project to expand our user community by making the data and applications from numerous Earth science missions more engaging, approachable and meaningful.

EOSDIS↗
NASA NTRS2018

Numerical Studies of Hall Thruster Acceleration Region Electron Transport

Azimuthal direction 1-D and azimuthal and axial direction 2-D Particle in Cell (PIC) simulations of the Hall thruster acceleration and near-plume regions are presented. The axial extent of the 2-D computational domain is based on the ExB drift parameter, 𝑫𝑬𝒙𝑩, the number of times around the channel an electron ExB drifts before being scattered. With only high energy main beam ions, the simulations produced a broad potential profile in the acceleration region. The addition of a small amount of ionization in the acceleration domain at a rate consistent with Hall thruster parameters causes the potential profile to develop two distinct regions. In the upstream portion of the computational domain, the potential profile is very steep, typical of Hall thruster acceleration regions. In the downstream portion, the potential profile is almost flat, like potentials in Hall thruster near plume regions. This bifurcation happens naturally; there is no other change in code parameters between the two results. Without the addition of a small amount of ionization in the acceleration region, the axial electron transport is very low. With ionization, the calculated ratio of electron current to ion current is the same order of those measured in Hall thrusters. This suggests that in regions with lower energy electrons and ions, plasma waves are effective in allowing crossfield transport, and axial electric fields are small. In the acceleration region, the plasma waves are less effective at scattering the energetic electrons, and high axial electric fields are needed to produce the observed cross-field electron transport.

Ortega, Alejandro Lopez↗
DOE OSTI2022

Supersaturation Variability from Scalar Mixing: Evaluation of a New Subgrid-Scale Model Using Direct Numerical Simulations of Turbulent Rayleigh–Bénard Convection

We report that supersaturation fluctuations in the atmosphere are critical for cloud processes. A nonlinear dependence on two scalars - water vapor and temperature - leads to different behavior than single scalars in turbulent convection. For modeling such multiscalar processes at subgrid scales (SGS) in large-eddy simulations (LES) or convection-permitting models, a new SGS scheme is implemented in CM1 that solves equations for SGS water vapor and temperature fluctuations and their covariance. The SGS model is evaluated using benchmark direct-numerical simulations (DNS) of turbulent Rayleigh–Bénard convection with water vapor as in the Michigan Tech Pi Cloud Chamber. This idealized setup allows thorough evaluation of the SGS model without complications from other atmospheric processes. DNS results compare favorably with measurements from the chamber. Results from LES using the new SGS model compare well with DNS, including profiles of water vapor and temperature variances, their covariance, and supersaturation variance. SGS supersaturation fluctuations scale appropriately with changes to the LES grid spacing, with the magnitude of SGS fluctuations decreasing relative to those at the resolved scale as the grid spacing is decreased. Sensitivities of covariance and supersaturation statistics to changes in water vapor flux relative to thermal flux are also investigated by modifying the sidewall conditions. Relative changes in water vapor flux substantially decrease the covariance and increase supersaturation fluctuations even away from boundaries.

54 ENVIRONMENTAL SCIENCES↗
NASA NTRS1980

Simple models of the thermal structure of the Venusian ionosphere

Analytical and numerical models of plasma temperatures in the Venusian ionosphere are proposed. The magnitudes of plasma thermal parameters are calculated using thermal-structure data obtained by the Pioneer Venus Orbiter. The simple models are found to be in good agreement with the more detailed models of thermal balance. Daytime and nighttime temperature data along with corresponding temperature profiles are provided.

Whitten, R. C.↗
NASA NTRS1991

The stability to two-dimensional wakes and shear layers at high Mach numbers

This study is concerned with the stability properties of laminar free-shear-layer flows, and in particular symmetric two-dimensional wakes, for the supersonic through the hypersonic regimes. Emphasis is given to the use of proper wake profiles that satisfy the equations of motion at high Reynolds numbers. In particular the inviscid stability of a developing two-dimensional wake is studied as it accelerates at the trailing edge of a splitter plate. The nonparallelism of the flow is a leading-order effect in the calculation of the basic state, which is obtained numerically. Neutral stability characteristics are computed and the hypersonic stability is obtained by increasing the Mach number. It is found that the stability characteristics are altered significantly as the wake develops. Multiple modes (secondary modes) are found in the near wake that are closely related to the corresponding Blasius ones, but as the wake develops mode multiplicity is delayed to higher and higher Mach numbers. At a distance of about one plate length from the trailing edge, there is only one mode in a Mach number range of 0-20. The dominant mode emerging at all wake stations, and for high enough Mach numbers, is the so-called vorticity mode that is centered around the generalized inflection point layer. The structure of the dominant mode is also obtained analytically for all streamwise wake locations and it is shown how the far-wake limit is approached. Asymptotic results for the hypersonic mixing layer given by a tanh and a Lock distribution are also given.

Papageorgiou, Demetrios T.↗
NASA NTRS2025

Assessment of Radiation Scattering by Dust in Mars Entry

The impact of gas phase radiation scattering by dust particle presence in Mars entry scenarios is assessed using a suite of numerical tools. A hypersonic gas and dilute particle multiphase flow is simulated using a mixed continuum model and an efficient size distribution quadrature scheme. Radiative transport is simulated with a hybrid ray-tracing and P1 spherical harmonics model. The NASA HARA radiation code and a Lorentz-Mie scattering model are used to predict the gas-particle mixture radiative properties. Application of the numerical suite to a representative case based on the Mars 2020 entry shows that, even at conditions in excess of the strongest recorded dust storm, the augmentation in surface radiative heat flux due to scattering alone is lower than 1%, and therefore negligible. Predictions with even higher dust loading conditions confirm that even highly uncertain dust mass profiles are unlikely to be a concern for the scattering augmentation mechanism.

Andrew Hinkle↗
NASA NTRS1972

Numerical study of strong plasma shock waves produced in an electromagnetic shock tube.

A set of two-fluid Navier-Stokes equations with classical physical transport coefficients is used to compute the evolution and structure of collisional plasma shock waves in an electromagnetic shock tube. Shock speeds up to 200 cm/microsec and shocked-plasma temperatures of the order of kilovolts are studied. A strong transverse bias magnetic field is employed, which significantly alters the size and shape of the shock profiles, when compared with the zero bias field case. The wave structure is different from that of a two-fluid gasdynamic shock without transverse magnetic field. Especially significant is the effect of the small ion Larmor radius in reducing the gasdynamic shock thickness by at least an order of magnitude in the transverse shock case, which permits collisional shocks to have thicknesses much smaller than the post-shock mean free path. These collisional shock waves produce very hot ions, the ion temperature increasing with shock speed, although the formation time and distances also increase substantially with shock speed.

Schneider, S. H.↗
NASA NTRS1994

Photodissociation of O2 and H2O in the middle atmosphere: Comparison of numerical methods and impact on model O3 and OH

We have compared three photochemical diurnal models of O3 and OH in the upper stratosphere and mesosphere which use different techniques for calculating the absorption of solar ultraviolet radiation by the O2 Schumann-Runge bands. One model uses a detailed line-by-line representation of the O2 cross section from 1750-2050 A, while the two others use lower resolution, parameterized cross sections. Using the parameterized cross sections, the calculated O3 profiles for both day and night agree with those obtained from the line-by-line model to within 6%. This appears to eliminate inaccuracies in the parameterized O2 cross section as a major cause of previously reported model O3 deficits. A portion of the residual differences from the line-by-line model are attributed to inaccuracies in the calculated H2O photolysis rate. A parameterized H2O cross section is offered which improves the accuracy of this calculation.

Siskind, David E.↗