The Crystal Structure of TAL Effector PthXo1 Bound to Its DNA Target
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EnvP(b)1 is an endogenous retroviral envelope gene found in human and other primate genomes. We report EnvP(b)1 sequences in primate genomes consistent with an integration event between 40 and 71 million years ago. Using a highly specific polyclonal antiserum raised against the putative receptor binding domain (RBD) of human EnvP(b)1, we detected expression in human placenta, ovaries, and thymus. We found that EnvP(b)1 is proteolytically processed, and using cell-cell fusion assays in multiple primate cell lines, we demonstrated that extant EnvP(b)1 proteins from a variety of primate genomes are fusogenic. This work supports the idea that EnvP(b)1 is under purifying selection and its fusogenic activity has been maintained for over 40 million years. We determined the structure of the RBD of human EnvP(b)1, which defines structural similarities with extant leukemia viruses, despite little sequence conservation. This structure highlights a common scaffold from which novel receptor binding specificities likely evolved. The evolutionary plasticity of this domain may underlie the diversity of related Envs in circulating viruses.
An accurate structure analysis of a Ba{sub 3}TaGa{sub 3}Si{sub 2}O{sub 14} single crystal from langasite family was performed using four X-ray diffraction data sets collected on a diffractometer equipped with a CCD area detector (sp. gr. P321, Z = 1, sinθ/λ ≤ 1.35 Å{sup –1}; at 295 K a = 8.516(1) Å, c = 5.1910(6) Å, R/wR = 0.58/0.56%, Δρ{sub min}/Δρ{sub max} =–0.73/0.42 e/Å{sup 3}, 4414 independent reflections; at 106 K a = 8.5109(9) Å, c = 5.1861(9) Å, R/wR = 0.75/0.86%, Δρ{sub min}/Δρ{sub max} =–0.81/1.06 e/Å{sup 3}, 4382 reflections). The distinguishing feature of the Ba{sub 3}TaGa{sub 3}Si{sub 2}O{sub 14} structure is a strong disorder of the Ga atom at the 3f site. Structural transformations in the series of Сa{sub 3}TaGa{sub 3}Si{sub 2}O{sub 14}–Sr{sub 3}TaGa{sub 3}Si{sub 2}O{sub 14}–Ba{sub 3}TaGa{sub 3}Si{sub 2}O{sub 14}–Ba{sub 3}TaFe{sub 3}Si{sub 2}O{sub 14} crystals were analyzed.
XRD and XAS were used to characterize the bulk structure, while XPS was used to characterize the surface structure, of commercially obtained nominally K 4 Fe(CN) 6 ·3H 2 O, K 3 Fe(CN) 6 and our synthesized Prussian Blue (PB) material. K 4 Fe(CN) 6 ·3H 2 O was found to consist of a fully hydrated phase, which crystallizes in the monoclinic form and a less hydrated or anhydrous phase which crystallizes in the orthorhombic form. K 3 Fe(CN) 6 was found to consist of the well-established orthorhombic form rather than the monoclinic form. The structure of our synthesized Prussian Blue (PB) was found to be consistent with that reported for (KOH) 0.7 Fe(III) 1.33 Fe(II)(CN) 6 ·4.0H 2 O which crystallizes in the cubic form. XPS and XAS confirmed the presence of ferrous Fe(II) at the surface and bulk levels in K 4 Fe(CN) 6 ·xH 2 O. However, XPS revealed the presence of Fe(II) (~30%) and Fe(III) (~70%) in the surface region of K 3 Fe(CN) 6 while XAS confirmed the presence of mostly Fe(III) at the bulk level. Both XPS and XANES confirmed the presence of Fe(II) and Fe(III) in the surface and bulk regions of PB. We report that this ex situ XAS study will be used to support the analysis of an in situ XAS data collected on a PB containing supercapacitor to understand the mechanistic origin of pseudocapacitance in these devices.
Here, dielectric microstructures have generated much interest in recent years as a means of accelerating charged particles when powered by solid state lasers. The acceleration gradient (or particle energy gain per unit length) is an important figure of merit. To design structures with high acceleration gradients, we explore the adjoint variable method, a highly efficient technique used to compute the sensitivity of an objective with respect to a large number of parameters. With this formalism, the sensitivity of the acceleration gradient of a dielectric structure with respect to its entire spatial permittivity distribution is calculated by the use of only two full-field electromagnetic simulations, the original and ‘adjoint’. The adjoint simulation corresponds physically to the reciprocal situation of a point charge moving through the accelerator gap and radiating. Using this formalism, we perform numerical optimizations aimed at maximizing acceleration gradients, which generate fabricable structures of greatly improved performance in comparison to previously examined geometries.
The response of the mesolite crystal structure (Na{sub 16}Ca{sub 16}Al{sub 48}Si{sub 72}O{sub 240}{center_dot}64H{sub 2}O) to dehydration was evaluated as a function of temperature and partial pressure of water (i.e., P{sub H{sub 2}O} or relative humidity, RH) using laboratory X-ray powder diffraction (XRD; CuK{sub {alpha}} radiation) and synchrotron X-ray pair distribution function (PDF) methods. At 425 C under low-P{sub H{sub 2}O} conditions (P{sub H{sub 2}O} {le} {approx}1.3 mbar), dehydrated mesolite preserved the long-range ordered aluminosilicate framework structure, which has not been previously observed. This new dehydrated phase, x-metamesolite, has unit-cell parameters [a = 16.731(3) {angstrom}, b = 17.822(2) {angstrom}, c = 6.312(1) {angstrom}, V = 1882.5(5) {angstrom}{sup 3}, and possible space group Fdd2] similar to those of other dehydrated natrolite phases (either 1- or 2-metanatrolite). Conversely, under high-P{sub H{sub 2}O} conditions (P{sub H{sub 2}O} > {approx}1.3 mbar), dehydrated mesolite became amorphous (amorphous T{sub 5}O{sub 10}) at 425 C. The local structure of amorphous T{sub 5}O{sub 10} was characterized by PDF analyses, which showed the formation of twisted T{sub 5}O{sub 10} nano-fibers [with dimensions (LWH) of {approx}6.9 x 6.9 x 6.3 {angstrom}] resulting from breakage of the mesolite aluminosilicate framework. The two distinct high-temperature P{sub H{sub 2}O}-dependent phase transition paths illustrate the importance of considering the combined effects of temperature and P{sub H{sub 2}O} in mesolite. In addition, the low-temperature phase transition in mesolite, involving order-disorder of the extraframework cations, also showed a P{sub H{sub 2}O}-dependent transition temperature. Although, there is no path dependence on P{sub H{sub 2}O} for this transition, the local arrangement of Na, Ca, and vacancies in disordered metamesolite (formed through the extraframework cation order-disorder phase transition) likely influences the thermal stability of the aluminosilicate framework during further heating.
The Multi-nut joint, developed at NASA Langley Research Center (LaRC), was designed to assemble TriTruss modules for a doubly curved 65.6-feet telescope support structure. Axial and bending tests for a multi-nut joint in the TriTruss structure were conducted to characterize the structural performance of the multi-nut joint and to obtain the installation torque value of the attachment fastener. This paper describes the summary of the axial and bending tests of the multi-nut joint, along with the test results. The equivalent axial stiffness (EA) and equivalent bending stiffness (EI) of the multi-nut joint were characterized based on these test results and are presented in this report. Additionally, finite element models (FEMs) of the axial and bending test specimens were developed, and the predicted axial and bending responses of the multi-nut joint were compared with the test results. Test-analysis comparison results show that the predicted axial load-displacement response of the test specimen was within 5 percent of the test results, while the predicted load-bending response of the test specimen exhibited a consistent trend with the test data.
The Multi-nut joint, developed at NASA Langley Research Center (LaRC), was designed to assemble TriTruss modules for a doubly curved 65.6-feet telescope support structure. Axial and bending tests for a multi-nut joint in the TriTruss structure were conducted to characterize the structural performance of the multi-nut joint and to obtain the installation torque value of the attachment fastener. This paper describes the summary of the axial and bending tests of the multi-nut joint, along with the test results. The equivalent axial stiffness (EA) and equivalent bending stiffness (EI) of the multi-nut joint were characterized based on these test results and are presented in this report. Additionally, finite element models (FEMs) of the axial and bending test specimens were developed, and the predicted axial and bending responses of the multi-nut joint were compared with the test results. Test-analysis comparison results show that the predicted axial load-displacement response of the test specimen was within 5 percent of the test results, while the predicted load-bending response of the test specimen exhibited a consistent trend with the test data.
Amorphous tantala (a-Ta{sub 2}O{sub 5}) is a technologically important material often used in high-performance coatings. Understanding this material at the atomic level provides a way to further improve performance. This work details extended X-ray absorption fine structure measurements of a-Ta{sub 2}O{sub 5} coatings, where high-quality experimental data and theoretical fits have allowed a detailed interpretation of the nearest-neighbor distributions. It was found that the tantalum atom is surrounded by four shells of atoms in sequence; oxygen, tantalum, oxygen, and tantalum. A discussion is also included on how these models can be interpreted within the context of published crystalline Ta{sub 2}O{sub 5} and other a-T{sub 2}O{sub 5} studies.
Structural model to evaluate evacuated multiwall structure for hypersonic aircraft
The 2.5 Å structure of the cytochrome (cyt) b 6 f complex provides a basis for control of the rate‐limiting electron transfer step of oxygenic photosynthesis associated with the plastoquinol/quinone exchange pathway. Here, a structural change was made at a site containing two proline residues which border the intra‐cyt pathway for plastoquinol/quinone exchange. The proline side chains confer a larger aperture for passage of plastoquinol/quinone. Change of these prolines to alanine in the cyanobacterium Synechococcus sp. PCC 7002 results in attenuation of this rate‐limiting step, observed by a two‐fold reduction in the rate of cell growth, O 2 evolution, and plastoquinol‐mediated reduction of cyt f . This study demonstrates modification by site‐directed mutagenesis of photosynthetic energy transduction based on rational application of information in the atomic structure.
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Size, shape, nuclearity: Aberration-corrected scanning transmission electron microscopy was used to determine the 3D structures of MgO-supported Os3, Os4, Os5, and Os10 clusters, which have structures nearly matching those of osmium carbonyl compounds with known crystal structures. The samples are among the best-defined supported catalysts.
Abstract not provided