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DOE OSTI2011

Crystal Structures of SlyA Protein, a Master Virulence Regulator of Salmonella, in Free and DNA-bound States

SlyA is a master virulence regulator that controls the transcription of numerous genes in Salmonella enterica. We present here crystal structures of SlyA by itself and bound to a high-affinity DNA operator sequence in the slyA gene. SlyA interacts with DNA through direct recognition of a guanine base by Arg-65, as well as interactions between conserved Arg-86 and the minor groove and a large network of non-base-specific contacts with the sugar phosphate backbone. Our structures, together with an unpublished structure of SlyA bound to the small molecule effector salicylate (Protein Data Bank code 3DEU), reveal that, unlike many other MarR family proteins, SlyA dissociates from DNA without large conformational changes when bound to this effector. We propose that SlyA and other MarR global regulators rely more on indirect readout of DNA sequence to exert control over many genes, in contrast to proteins (such as OhrR) that recognize a single operator.

59 BASIC BIOLOGICAL SCIENCES↗

DOE OSTI2021

LAMP Diagnostics at the Point-of-Care: Emerging Trends and Perspectives for the Developer Community

Over the past decade, loop-mediated isothermal amplification (LAMP) technology has played an important role in molecular diagnostics. Amongst numerous nucleic acid amplification assays, LAMP stands out in terms of sample-to-answer time, sensitivity, specificity, cost, robustness, and accessibility, making it ideal for field-deployable diagnostics in resource-limited regions. In this review, we outline the front-end LAMP design practices for point-of-care (POC) applications, including sample handling and various signal readout methodologies. Next, we explore existing LAMP technologies that have been validated with clinical samples in the field. We summarize recent work that utilizes reverse transcription (RT) LAMP to rapidly detect SARS-CoV-2 as an alternative to standard PCR protocols. Finally, we describe challenges in translating LAMP from the benchtop to the field and opportunities for future LAMP assay development and performance reporting. Despite the popularity of LAMP in the academic research community and a recent surge in interest in LAMP due to the COVID-19 pandemic, there are numerous areas for improvement in the fundamental understanding of LAMP, which are needed to elevate the field of LAMP assay development and characterization.

60 APPLIED LIFE SCIENCES↗

DOE OSTI2011

KEPLER MISSION STELLAR AND INSTRUMENT NOISE PROPERTIES

Kepler mission results are rapidly contributing to fundamentally new discoveries in both the exoplanet and asteroseismology fields. The data returned from Kepler are unique in terms of the number of stars observed, precision of photometry for time series observations, and the temporal extent of high duty cycle observations. As the first mission to provide extensive time series measurements on thousands of stars over months to years at a level hitherto possible only for the Sun, the results from Kepler will vastly increase our knowledge of stellar variability for quiet solar-type stars. Here, we report on the stellar noise inferred on the timescale of a few hours of most interest for detection of exoplanets via transits. By design the data from moderately bright Kepler stars are expected to have roughly comparable levels of noise intrinsic to the stars and arising from a combination of fundamental limitations such as Poisson statistics and any instrument noise. The noise levels attained by Kepler on-orbit exceed by some 50% the target levels for solar-type, quiet stars. We provide a decomposition of observed noise for an ensemble of 12th magnitude stars arising from fundamental terms (Poisson and readout noise), added noise due to the instrument and that intrinsic to the stars. The largest factor in the modestly higher than anticipated noise follows from intrinsic stellar noise. We show that using stellar parameters from galactic stellar synthesis models, and projections to stellar rotation, activity, and hence noise levels reproduce the primary intrinsic stellar noise features.

79 ASTRONOMY AND ASTROPHYSICS↗

DOE OSTI2024

Theoretical investigation of decoherence channels in athermal phonon sensors

The creation and evolution of nonequilibrium phonons is central in applications ranging from cosmological particle searches to decoherence processes in qubits. However, the fundamental understanding of decoherence pathways for athermal phonon distributions in solid-state systems remains an open question. Using first-principles calculations, we investigate the primary decay channels of athermal phonons in two technologically relevant semiconductors—Si and GaAs. We quantify the contributions of anharmonic, isotopic, and interfacial scattering in these materials. From this, we construct a model to estimate the thermal power in a readout scheme as a function of time. We discuss the implication of our results on noise limitations in current phonon sensor designs and strategies for improving coherence in next-generation phonon sensors.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗

DOE OSTI2025

The Auger Radioisotope Microscope: an instrument for characterization of Auger electron multiplicities and energy distributions

We describe a new instrument, the Argonne Auger Radioisotope Microscope (ARM), capable of characterizing the Auger electron (AE) emission of radionuclides, including candidates relevant in nuclear medicine. Our approach relies on event-by-event ion–electron coincidence, time-of-flight, and spatial readout measurement to determine correlated electron multiplicity and energy distributions of Auger decays. We present a proof-of-principle measurement with the ARM using x-ray photoionization of stable krypton beyond the K-edge and identify a bifurcation in the electron multiplicity distribution depending on the emission of K-LX electrons. Extension of the ARM to the characterization of radioactive sources of AE emissions is enabled by the combination of two recent developments: (1) cryogenic buffer gas beam technology to introduce Auger emitters into the detection region with well-defined initial conditions, and (2) large-area micro-channel plate detectors with multi-hit detection capabilities to simultaneously detect multiple electrons emitted in a single decay.

Auger emitters↗

DOE OSTI2021

Observables for recoil identification in high-definition Gas Time Projection Chambers

Directional detection of nuclear recoils is broadly desirable in nuclear and particle physics. At low recoil energies, this capability may be used to confirm the cosmological origin of a dark matter signal, to penetrate the so-called neutrino floor, or to distinguish between different neutrino sources. Gas Time Projection Chambers (TPCs) can enable directional recoil detection if the readout granularity is sufficiently high, as is the case when micro-pattern gaseous detectors (MPGDs) are utilized. A key challenge in such detectors is identifying and rejecting background electron recoil events caused by gamma rays from radioactive contaminants in the detector materials and the environment. We define new observables that can distinguish electron and nuclear recoils, even at keV-scale energies, based on the simulated ionization's topology. Here we perform a simulation study that shows these observables outperform the traditionally used discriminant, dE/dx, by up to three orders of magnitude. Furthermore, these new observables work well even at ionization energies well below 10keV and remain robust even in the regime where directionality fails.

79 ASTRONOMY AND ASTROPHYSICS↗

DOE OSTI2018

The Zwicky Transient Facility: System Overview, Performance, and First Results

The Zwicky Transient Facility (ZTF) is a new optical time-domain survey that uses the Palomar 48 inch Schmidt telescope. A custom-built wide-field camera provides a 47 deg 2 field of view and 8 s readout time, yielding more than an order of magnitude improvement in survey speed relative to its predecessor survey, the Palomar Transient Factory. We describe the design and implementation of the camera and observing system. The ZTF data system at the Infrared Processing and Analysis Center provides near-real-time reduction to identify moving and varying objects. We outline the analysis pipelines, data products, and associated archive. As a result, we present on-sky performance analysis and first scientific results from commissioning and the early survey. ZTF's public alert stream will serve as a useful precursor for that of the Large Synoptic Survey Telescope.

79 ASTRONOMY AND ASTROPHYSICS↗

DOE OSTI2019

The Zwicky Transient Facility: Science Objectives

The Zwicky Transient Facility (ZTF), a public–private enterprise, is a new time-domain survey employing a dedicated camera on the Palomar 48-inch Schmidt telescope with a 47 deg 2 field of view and an 8 second readout time. It is well positioned in the development of time-domain astronomy, offering operations at 10% of the scale and style of the Large Synoptic Survey Telescope (LSST) with a single 1-m class survey telescope. The public surveys will cover the observable northern sky every three nights in g and r filters and the visible Galactic plane every night in g and r . Alerts generated by these surveys are sent in real time to brokers. A consortium of universities that provided funding (“partnership”) are undertaking several boutique surveys. The combination of these surveys producing one million alerts per night allows for exploration of transient and variable astrophysical phenomena brighter than r ~ 20.5 on timescales of minutes to years. We describe the primary science objectives driving ZTF, including the physics of supernovae and relativistic explosions, multi-messenger astrophysics, supernova cosmology, active galactic nuclei, and tidal disruption events, stellar variability, and solar system objects.

79 ASTRONOMY AND ASTROPHYSICS↗

DOE OSTI2023

High-speed Focal Plane Wave Front Sensing with an Optical Chopper

Focal plane wave front sensing and control is a critical approach to reducing noncommon path errors between a conventional astronomical adaptive optics (AO) wave front sensor (WFS) detector and a science camera. However, in addition to mitigating noncommon path errors, recent focal plane wave front sensing techniques have been developed to operate at speeds fast enough to enable "multi-WFS" AO, where residual atmospheric errors are further corrected by a focal plane WFS. Although a number of such techniques have been recently developed for coronagraphic imaging, here we present one designed for noncoronagraphic imaging. Utilizing conventional AO system components, this concept additionally requires (1) a detector imaging the focal plane of the WFS light source and (2) a pupil plane optical chopper device that is the noncommon path to the first WFS and is synchronized to the focal plane imager readout. These minimal hardware requirements enable the temporal amplitude modulation to resolve the sine ambiguity of even wave-front modes for low, mid, and high wave front spatial frequencies. Similar capabilities have been demonstrated with classical phase diversity by defocusing the detector, but such techniques are incompatible with simultaneous science observations. This optical chopping technique, however, enables science imaging at up to 50% duty cycle. In conclusion, we present both simulations and laboratory validation of this concept on SEAL, the Santa Cruz Extreme AO Laboratory testbed.

79 ASTRONOMY AND ASTROPHYSICS↗

DOE OSTI2022

Measurement of integrated luminosities at BESIII for data samples at center-of-mass energies between 4.0 and 4.6 GeV*

Abstract The integrated luminosities of data samples collected in the BESIII experiment in 2016–2017 at center-of-mass energies between 4.19 and 4.28 GeV are measured with a precision better than 1% by analyzing large-angle Bhabha scattering events. The integrated luminosities of old datasets collected in 2010–2014 are updated by considering corrections related to detector performance, offsetting the effect of newly discovered readout errors in the electromagnetic calorimeter, which can haphazardly occur.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

DOE OSTI2024

The Impact of Bias Row Noise to Photometric Accuracy: Case Study Based on a Scientific CMOS Detector

Abstract We tested a new model of CMOS detector manufactured by the Gpixel Inc, for potential space astronomical application. In laboratory, we obtain some bias images under the typical application environment. In these bias images, clear random row noise pattern is observed. The row noise also contains some characteristic spatial frequencies. We quantitatively estimated the impact of this feature to photometric measurements, by making simulated images. We compared different bias noise types under strict parameter control. The result shows the row noise will significantly deteriorate the photometric accuracy. It effectively increases the readout noise by a factor of 2–10. However, if it is properly removed, the image quality and photometric accuracy will be significantly improved.

Astronomy & Astrophysics↗

DOE OSTI2025

Towards a quantum realization of the ampere using single-electron resolution Skipper-CCDs

This paper presents a proof-of-concept demonstration of the Skipper-charge coupled device (CCD), a sensor with single-electron counting capability, as a promising technology for implementing an electron-pump-based current source. Relying on its single-electron resolution and built-in charge sensing, it allows self-calibration of the charge packets. This article presents an initial discussion of the uncertainty in the charge measurement and achievable currents levels with this technology. Here, we report experimental results that illustrate the key functionalities in manipulating both small and large electron charge packets, including a comparison of the charge generated, self-measured, and drained by the sensor against measurements from an electrometer. These results were obtained using a standard sensor and readout electronics without specific optimizations for this application. The objective is to explore the potential of Skipper-CCD for realizing an electron-based current source.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

DOE OSTI2019

Electron beam test of the large area Mu2e calorimeter prototype

The Mu2e calorimeter consists of 1348 pure CsI crystals coupled to two large area UV-extended Silicon Photomultipliers (SiPMs) organized in two separate annular disks. An intense R&D phase has been pursued to check if this configuration satisfies the Mu2e requirements. In May 2017, a dedicated test has been performed at the Beam Test Facility (BTF) in Frascati (Italy) where the large calorimeter prototype (Module-0) has been exposed to an electron beam in the energy range between 60 and 120 MeV. The prototype consists of 51 crystals, each one readout by two Mu2e SiPMs. We present results for timing and energy resolution both for electrons at normal incidence (0°) and at a grazing impact angle (50°) more similar to the experiment configuration. At 100 MeV, an energy resolution of 5.4% (7.4%) at normal (grazing) incidence has been achieved in good agreement with Monte Carlo expectation. In the same energy range, a time resolution of ~XX ps (~YY ps) has been measured at normal incidence with 1 GHz (250 MHz) sampling rate. Dependence of time and energy resolutions as a function of beam energy and impinging angle are also presented.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

DOE OSTI2019

Results from 2015 and the 2016 upgrade of the CONNIE experiment for detecting coherent neutrino nucleus scattering

The CONNIE Experiment (Coherent Neutrino Nucleus Interaction Experiment) is currently collecting reactor neutrino data to search for the undiscovered standard model process of coherent neutrino-nucleus scattering (CNNS). The detector is composed of a silicon target of thick, fully-depleted, low-noise CCD detectors. Results from data collected in 2015 indicate backgrounds are controlled, and allow an estimate of sensitivity to be presented for a larger scale detector. A 2016 upgrade, adding additional target mass, and reducing readout noise, has been performed, increasing the total yield of signal events by a factor of 30, and already yielding science-quality data. Low-energy nuclear calibrations have been performed, enabling calibration down to the device energy threshold. An estimate of the sensitivity expected for measuring the coherent neutrino process is presented. Future prospects with improved detector energy thresholds are estimated.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

DOE OSTI2020

First data from the CUPID-Mo neutrinoless double beta decay experiment

The CUPID-Mo experiment is searching for neutrinoless double beta decay in $^{100}$Mo, evaluating the technology of cryogenic scintillating Li$_{2}^{100}$MoO$_4$ detectors for CUPID (CUORE Upgrade with Particle ID). CUPID-Mo detectors feature background suppression using a dual-readout scheme with Li$_{2}$MoO$_4$ crystals complemented by Ge bolometers for light detection. The detection of both heat and scintillation light signals allows the efficient discrimination of $\alpha$ from $\gamma$&$\beta$ events. In this proceedings, we discuss results from the first 2 months of data taking in spring 2019. In addition to an excellent bolometric performance of 6.7$\,$keV (FWHM) at 2615$\,$keV and an $\alpha$ separation of better than 99.9% for all detectors, we report on bulk radiopurity for Th and U. Finally, we interpret the accumulated physics data in terms of a limit of $T_{1/2}^{0\nu}\,> 3\times10^{23}\,$yr for $^{100}$Mo and discuss the sensitivity of CUPID-Mo until the expected end of physics data taking in early 2020.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

DOE OSTI2021

Time Projection Chambers instrumented with resistive MicroMegas for the SAND near detector of DUNE

The Deep Underground Neutrino Experiment (DUNE) is a next-generation long-baseline neutrino accelerator experiment aiming for precise measurements of the neutrino oscillation parameters. DUNE will include a near detector complex regrouping three different detectors among which SAND (System for on-Axis Neutrino Detection) that will be the only one permanently on the neutrino beam axis in charge of monitoring in detail the emitted neutrino beam and its stability through time, a crucial characteristic to realize accurate oscillation measurements at the percent level. SAND will reuse the superconducting magnet and the electromagnetic calorimeter of the KLOE experiment. We will describe in the following the proposal of using, as inner tracker of SAND, a large 3D matrix of 1.5cm side scintillator cubes (3DST) surrounded by 3 gaseous Time Projection Chambers. This setup allows to realize accurate beam monitoring combining the 3DST unprecedented capability of neutron detection and energy measurement with the high precision momentum resolution for charged particles offered by the TPCs. The proposed TPC design allows to reach spatial resolutions of a few hundreds of micrometers using 1 cm pads by deploying the resistive MicroMegas technology for the charge readout.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

DOE OSTI2022

Liquid Argon Time Projection Chamber Trigger Development with MicroBooNE

The Micro Booster Neutrino Experiment (MicroBooNE) is a Liquid Argon Time Projection Chamber (LArTPC) neutrino detector at Fermilab that has been operating since 2015. It aims to perform v-Ar cross-section measurements, explore the low-energy excess reported by the MiniBooNE experiment and perform a combined search for sterile neutrino oscillations as part of three LArTPCs that make up the Short Baseline Neutrino (SBN) Program at Fermilab. Since MicroBooNE is currently in an R&D phase, it offers a unique opportunity for the implementation and testing of TPC-based triggers as R&D towards the Deep Underground Neutrino Experiment (DUNE). One of the technical challenges of DUNE that we aim to address with this study is that of efficient self-triggering of a LArTPC utilizing TPC signal information. This capability will enable searches for rare processes in DUNE, such as neutrino interactions from a potential galactic supernova burst. This talk will describe the MicroBooNE TPC readout system and ongoing R&D efforts to develop and demonstrate TPC-based triggering.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

DOE OSTI2022

The MURAVES muon telescope: a low power consumption muon tracker for muon radiography applications

Muon Radiography or muography is based on the measurement of the absorption or scattering of cosmic muons, as they pass through the interior of large scale bodies, In particular, absorption muography has been applied to investigate the presence of hidden cavities inside the pyramids or underground, as well as the interior of volcanoes’ edifices. The MURAVES project has the challenging aim of investigating the density distribution inside the summit of Mt. Vesuvius. The information, together with that coming from gravimetric measurements, is useful as input to models, to predict how an eruption may develop. The MURAVES apparatus is a robust and low power consumption muon telescope consisting of an array of three identical and independent muon trackers, which provide in a modular way a total sensitive area of three square meters. Each tracker consists of four doublets of planes of plastic scintillator bars with orthogonal orientation, optically coupled to Silicon photomultipliers for the readout of the signal. The muon telescope has been installed on the slope of the volcano and has collected a first set of data, which are being analyzed.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗