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At least 1,405 records · Page 78

Centrifugal Generation of Droplet-Based 3D Cell Cultures

Quickly and easily producing uniform populations of microsphere-based 3D cell cultures using droplet-based templating methods has the potential to enable widespread use of such platforms in drug discovery or cancer research. Here, we advance the design of centrifuge-based droplet generation devices, describe the use of this platform for droplet generation with controlled cell occupancy, and demonstrate weeklong culture duration. Using simple-to-construct devices and easily implemented protocols, the initial concentration of encapsulated cells is adjustable up to hundreds of cells per microsphere. This work demonstrates the first instance of using centrifugal droplet-generating devices to produce large numbers of cell-encapsulating microspheres. Applications of this versatile methodology include the rapid formation of templated 3D cell culture populations suitable for suspension culture or large batch bioreactor studies that require uniform populations.

Biochemistry & Molecular Biology↗

DLK1 is a GATA1s-driven dependency and therapeutic target in Down syndrome–associated myeloid leukemia

Children with Down syndrome have a markedly increased risk of developing myeloid leukemia. Although having an excellent prognosis, 10% to 20% develop relapsed or refractory disease with poor survival, highlighting the need for new targeted approaches. The pathogenesis of myeloid leukemia of Down syndrome (ML-DS) is tightly linked to fetal hematopoiesis and mutations in GATA1, generating the truncated GATA1 short (GATA1s) isoform. We identified Delta-like noncanonical Notch ligand 1 (DLK1) as a direct GATA1s target. DLK1, a paternally imprinted transmembrane protein, is highly expressed in fetal liver CD34 + cells but absent in adult hematopoiesis, making it an attractive immunotherapeutic target. Chromatin profiling revealed GATA1s occupancy at a distal enhancer within the DLK1-DIO3 locus, driving aberrant DLK1 upregulation in ML-DS. Functional studies demonstrated that DLK1 is a leukemia dependency, as its genetic ablation impaired proliferation and engraftment, induced apoptosis, and altered Notch and β-catenin signaling. Therapeutically, a DLK1-directed antibody-drug conjugate–induced selective cytotoxicity, abrogated colony formation, and significantly prolonged survival in refractory ML-DS patient-derived xenograft (PDX) models, achieving durable remissions at higher doses. These findings establish DLK1 as a leukemia-specific vulnerability and provide preclinical proof-of-concept for DLK1-targeted therapies in ML-DS and other leukemias with fetal-like expression programs.

Biological and medical sciences↗

The human plasma lipidome response to exertional heat tolerance testing

The year of 2023 displayed the highest average global temperatures recorded in history— the duration and severity of extreme heat are projected to increase. Rising global temperatures represent a major public health threat, especially to occupations exposed to hot environments, such as construction and agricultural workers, and first responders. Despite efforts of the scientific community, there is still a need to characterize the pathophysiological processes leading to heat related illness and develop biomarkers that can predict its onset. Here, we performed a plasma lipidomic analysis on male and female subjects who underwent heat tolerance testing (HTT), consisting of a 2-h treadmill walk at 5 km/h with 2% inclination at a controlled temperature of 40oC. We identified 995 lipids from 27 classes, with nearly half of all detected lipids being responsive to HTT. Lipid classes related to substrate utilization were predominantly affected by HTT, with a downregulation of triacylglycerols and upregulation of free fatty acids and acyl-carnitines. We additionally examined correlations between changes in plasma lipids by using the even chain acyl-carnitines is physiological strain index (PSI). Here, even chain acyl-carnitines, bi-products of incomplete beta oxidation, and diacylglycerols displayed the highest correlation to PSI. PSI did not correlate with plasma lactate levels, which suggests that correlations with related to metabolic efficiency versus physical exertion. Overall, our results show that HTT has a strong impact on the plasma lipidome and that incomplete beta oxidation may underlie heat intolerance.

60 APPLIED LIFE SCIENCES↗

Disruption of histone acetylation homeostasis reveals multilayered chromatin regulation for transcriptional resiliency

Background Epigenetic modifications, nucleosome occupancy, and three-dimensional chromatin architecture collectively create a multi-layered, highly interactive regulatory system for controlling genomic functionality. Dysregulation of epigenetic processes leads to a plethora of abnormalities including disease states. Therapies focused on epigenetic modulation can alter gene expression to correct dysfunction, though the perpetuation of these states and the relationships among chromatin regulatory layers is not well understood. Results Here, we investigated global and local chromatin structural and functional responses after acute histone deacetylase inhibitor treatment (suberoylanilide hydroxamic acid) in lung cancer cells across time. Treatment substantially increased global histone acetylation resulting in a pervasive but not distinctive signature. The spread of acetylation did not significantly impact global chromatin accessibility, and nucleosome remodeling largely occurred at finer scales in functionally relevant genomic regions. Indeed, both H 3 K 4 trimethylation, a mark of active transcription, and gene expression changes were altered in a controlled locus-specific manner, suggesting aberrant acetylation indirectly leads to balanced and bidirectional gene expression profiles from tighter regulation of other chromatin features. HDACi treatment induced (13%) genomic rearrangement in chromatin compartmentalization and moderate weakening of topologically associating domains. Conclusions Continuous wavelet analysis of these features demonstrates that scale-dependent, locus-specific factors influence the relationship between chromatin architecture and functional output, suggesting that regulation of transcription and nucleosome remodeling is not entirely (nor linearly) dependent upon large scale compartment exchange. Structural and functional responses are most pronounced early after treatment with partial persistence of differential local chromatin features and expression later in time; this highlights the plasticity of chromatin regulation, which may have implications for the efficacy of epigenetic treatments. These results demonstrate the effectiveness of multi-layered regulation of transcription: in resilient systems, disruption of one chromatin feature does not distort the regulation of other features in supporting a transcriptional program that allows for survival.

59 BASIC BIOLOGICAL SCIENCES↗

Elucidating regulatory processes of intense physical activity by multi-omics analysis

Abstract Background Physiological and biochemical processes across tissues of the body are regulated in response to the high demands of intense physical activity in several occupations, such as firefighting, law enforcement, military, and sports. A better understanding of such processes can ultimately help improve human performance and prevent illnesses in the work environment. Methods To study regulatory processes in intense physical activity simulating real-life conditions, we performed a multi-omics analysis of three biofluids (blood plasma, urine, and saliva) collected from 11 wildland firefighters before and after a 45 min, intense exercise regimen. Omics profiles post- versus pre-exercise were compared by Student’s t -test followed by pathway analysis and comparison between the different omics modalities. Results Our multi-omics analysis identified and quantified 3835 proteins, 730 lipids and 182 metabolites combining the 3 different types of samples. The blood plasma analysis revealed signatures of tissue damage and acute repair response accompanied by enhanced carbon metabolism to meet energy demands. The urine analysis showed a strong, concomitant regulation of 6 out of 8 identified proteins from the renin-angiotensin system supporting increased excretion of catabolites, reabsorption of nutrients and maintenance of fluid balance. In saliva, we observed a decrease in 3 pro-inflammatory cytokines and an increase in 8 antimicrobial peptides. A systematic literature review identified 6 papers that support an altered susceptibility to respiratory infection. Conclusion This study shows simultaneous regulatory signatures in biofluids indicative of homeostatic maintenance during intense physical activity with possible effects on increased infection susceptibility, suggesting that caution against respiratory diseases could benefit workers on highly physical demanding jobs.

59 BASIC BIOLOGICAL SCIENCES↗

Seroprevalence of Brucella spp. and Rift Valley fever virus among slaughterhouse workers in Isiolo County, northern Kenya

Brucella spp. and Rift Valley fever virus (RVFV) are classified as priority zoonotic agents in Kenya, based on their public health and socioeconomic impact on the country. Data on the pathogen-specific and co-exposure levels is scarce due to limited active surveillance. This study investigated seroprevalence and co-exposure of Brucella spp. and RVFV and associated risk factors among slaughterhouse workers in Isiolo County, northern Kenya. A cross-sectional serosurvey was done in all 19 slaughterhouses in Isiolo County, enrolling 378 participants into the study. The overall seroprevalences for Brucella spp. and RVFV were 40.2% (95% CI: 35.2–45.4) and 18.3% (95% CI: 14.5–22.5), respectively while 10.3% (95% CI 7.4%-13.8%) of individuals were positive for antibodies against both Brucella spp. and RVFV. Virus neutralisation tests (VNT) confirmed anti-RVFV antibodies in 85% of ELISA-positive samples. Our seroprevalence results were comparable to community-level seroprevalences previously reported in the area. Since most of the study participants were not from livestock-keeping households, our findings attribute most of the detected infections to occupational exposure. The high exposure levels indicate slaughterhouse workers are the most at-risk population and there is need for infection, prevention, and control programs among this high-risk group. This is the first VNT confirmation of virus-neutralising antibodies among slaughterhouse workers in Isiolo County and corroborates reports of the area being a high-risk RVFV area as occasioned by previously reported outbreaks. This necessitates sensitization campaigns to enhance awareness of the risks involved and appropriate mitigation measures.

60 APPLIED LIFE SCIENCES↗

Analysis of mobility data to build contact networks for COVID-19

As social distancing policies and recommendations went into effect in response to COVID-19, people made rapid changes to the places they visit. These changes are clearly seen in mobility data, which records foot traffic using location trackers in cell phones. While mobility data is often used to extract the number of customers that visit a particular business or business type, it is the frequency and duration of concurrent occupancy at those sites that governs transmission. Understanding the way people interact at different locations can help target policies and inform contact tracing and prevention strategies. This paper outlines methods to extract interactions from mobility data and build networks that can be used in epidemiological models. Several measures of interaction are extracted: interactions between people, the cumulative interactions for a single person, and cumulative interactions that occur at particular businesses. Network metrics are computed to identify structural trends which show clear changes based on the timing of stay-at-home orders. Measures of interaction and structural trends in the resulting networks can be used to better understand potential spreading events, the percent of interactions that can be classified as close contacts, and the impact of policy choices to control transmission.

60 APPLIED LIFE SCIENCES↗

High throughput embryonic zebrafish test with automated dechorionation to evaluate nanomaterial toxicity

Engineered nanomaterials pose occupational health and environmental concerns as they possess unique physical and chemical properties that can contribute to toxicity. High throughput toxicity screening methods are needed to address the increasing number of nanomaterials in production. Here we used a zebrafish photomotor response (PMR) test to evaluate a set of fifteen nanomaterials with military relevance. Automated dechorionation of zebrafish embryos was used to enhance nanomaterials bioavailability. Optimal PMR activity in zebrafish embryos was found at 30–31 hours post-fertilization (hpf). Behavioral and toxicological responses were measured at 30 and 120 hpf; behavioral responses were found for thirteen of the fifteen nanomaterials and acute toxicity (LC50) levels for nine of the fifteen nanomaterials below the maximum test concentration of 500 μg/ml. Physico-chemical characterization of the nanomaterials detected endotoxin and bacterial contamination in two of the tested samples, which may have contributed to observed toxicity and reinforces the need for physical and chemical characterization of nanomaterials use in toxicity testing. The zebrafish PMR test, together with automated dechorionation, provides an initial rapid assessment of the behavioral effects and toxicity of engineered nanomaterials that can be followed up by physico-chemical characterization if toxicity is detected, reducing the amount of time and monetary constraints of physico-chemical testing.

59 BASIC BIOLOGICAL SCIENCES↗

Misclassification of causes of death among a small all-autopsied group of former nuclear workers: Death certificates vs. autopsy reports

The U.S. Transuranium and Uranium Registries performs autopsies on each of its deceased Registrants as a part of its mission to follow up occupationally-exposed individuals. This provides a unique opportunity to explore death certificate misclassification errors, and the factors that influence them, among this small population of former nuclear workers. Underlying causes of death from death certificates and autopsy reports were coded using the 10 th revision of the International Classification of Diseases (ICD-10). These codes were then used to quantify misclassification rates among 268 individuals for whom both full autopsy reports and death certificates with legible underlying causes of death were available. When underlying causes of death were compared between death certificates and autopsy reports, death certificates correctly identified the underlying cause of death’s ICD-10 disease chapter in 74.6% of cases. The remaining 25.4% of misclassified cases resulted in over-classification rates that ranged from 1.2% for external causes of mortality to 12.2% for circulatory disease, and under-classification rates that ranged from 7.7% for external causes of mortality to 47.4% for respiratory disease. Neoplasms had generally lower misclassification rates with 4.3% over-classification and 13.3% under-classification. A logistic regression revealed that the odds of a match were 2.8 times higher when clinical history was mentioned on the autopsy report than when it was not. Similarly, the odds of a match were 3.4 times higher when death certificates were completed using autopsy findings than when autopsy findings were not used. This analysis excluded cases where it could not be determined if autopsy findings were used to complete death certificates. The findings of this study are useful to investigate the impact of death certificate misclassification errors on radiation risk estimates and, therefore, improve the reliability of epidemiological studies.

63 RADIATION, THERMAL, AND OTHER ENVIRON. POLLUTAN↗

2011 Seattle Tolling Impact Survey

The 2011 Tolling Impact Survey measured the impact of tolling on travel behavior in Seattle, Washington. The Volpe Center conducted the survey on behalf of the U.S. Department of Transportation and the Urban Partnership Agreement. The population surveyed included drivers, public transportation users, carpoolers, and vanpoolers using the SR-520 corridor in Seattle. The survey was conducted in two phases—before and after toll implementation—to evaluate related attitude changes. The survey assessed route changes, trip timing, trip purpose, and travel mode (i.e., single-occupancy vehicle, carpool, or public transportation).

1Hz data↗

2011 Atlanta Tolling Impact Survey

The 2011 Tolling Impact Survey measured the impact of tolling on travel behavior in Atlanta, Georgia. The Volpe Center conducted the survey on behalf of the U.S. Department of Transportation and the Urban Partnership Agreement. The population surveyed included drivers, public transportation users, carpoolers, and vanpoolers using the I-85 corridor in Atlanta, Georgia. The survey was conducted in two phases—before and after toll implementation—to evaluate related attitude changes. The survey assessed route changes, trip timing, trip purpose, and travel mode (i.e., single-occupancy vehicle, carpool, or public transportation).

1Hz data↗

2000-2001 California Statewide Household Travel Survey

The 2000-2001 California Statewide Household Travel Survey, conducted under the auspices of the California Department of Transportation, was conducted between October 2000 and December 2001 among households located in each of California's 58 counties. The purpose of the study was to update the statewide database of household socioeconomic and travel information and helped to refine travel estimates, models, and forecasts throughout California. The survey was an essential element in determining statewide and regional travel patterns. A total of 17,040 households participated in the survey, contributing household socioeconomic and travel data. Travel variables collected include trip times, mode, activity at location, origin and destination, and vehicle occupancy, among other travel-related data from 134,173 trips. Residents completed diary records of their daily travel over a 24-hour (weekday) or 48-hour period (Friday/Saturday or Sunday/Monday pair).

1Hz data↗

1990 CATS Household Travel Survey

The Chicago Area Transportation Study (CATS) 1990 Household Travel Survey was a self-administered mail-out mail-back survey. The purpose of the study was to update existing data on travel patterns and characteristics of Chicago residents. CATS surveyed the region on a county-by-county basis with the Chicago Central Business District in collaboration with the Urban Transportation Center of the University of Illinois. The study gathered demographic and travel behavior data from residents of northeastern Illinois who were 14 years old or older. 19,314 households participated in the survey. The study focused on non-work travel by motorized vehicle and by foot, and residents recorded their trips on a single travel day. Transportation-related variables include trip origin and destination, trip purpose, travel time, mode of travel used, vehicle occupancy, and walking distance (if that transit mode was involved).

1Hz data↗

2002 Treasure Valley Transportation Survey

The 2002 Treasure Valley Transportation Survey was conducted in Ada and Canyon counties in southwest Idaho, under contract with the Community Planning Association of Southwest Idaho. The full study was conducted during September 2002 and October 2002 and entailed the collection of activity and travel information for all household members, regardless of age, during an assigned 24-hour period (Tuesday, Wednesday, or Thursday). In addition to providing basic demographic information about each household and its members, the survey documented specific travel characteristics and trips made, including the number of occupants, trip purpose, time of day, and questions specific to mode use. Travel days for the survey were spread across the pilot study (August 8, 2002) and the full study (September 3, 2002-October 31, 2002). In total, 3,488 households were recruited to participate in the study. Of these, 2,582 completed travel diaries (fully completed and passed edit check procedures), and the information was retrieved from all household members.

1Hz data↗

2000 Delaware Valley Regional Planning Commission Household Travel Survey

This survey was conducted from March through December 2000 under the auspices of the Delaware Valley Regional Planning Commission and the Southern Jersey Transportation Planning Organization and funded through the Pennsylvania and New Jersey departments of transportation. Cambridge Systematics provided quality assurance under a subcontract to NuStats. The purpose of the survey was to obtain information about work and non-work trip generation, trip distribution, modal choice, and traffic assignment, as well as to obtain data on average vehicle occupancy. The dataset contains demographic and travel data on 5,677 households in the 14-county study area. Of those households, 4,217 were from the 10-county Delaware Valley region of Pennsylvania and New Jersey. The 4,217 Delaware Valley households, when weighted, represent 9,358 members and 6,069 vehicles, and reported a total of 31,631 trips.

1Hz data↗

2000 Bay Area Travel Survey

In 2000, the San Fransisco Bay Area Metropolitan Transportation Commission launched its fifth travel survey effort in the nine-county Bay Area. More than 15,000 households participated. The survey was an activity-based travel survey that collected information on all in-home and out-of-home activities over a two-day period, including weekday and weekend pursuits. Like the 1990 survey, the 2000 Bay Area Travel Survey also included an additional sample of 3,000 households using Bay Area Rapid Transit. Respondents were asked to report detailed information regarding their travel, including trip locations, mode of transportation, trip start and end times, trip purpose, and trip activities. Demographic variables include gender, age, employment status, occupation, income, education level, ethnicity, as well as whether a respondent held a valid driver's license, was a student, and had a disability.

1Hz data↗

2005 Tahoe Regional Household Travel Survey

The 2005 Tahoe Regional Household Travel Survey is a comprehensive survey of the travel patterns of households in the Tahoe Basin region of California and Nevada. The survey was conducted for the Tahoe Regional Planning Agency over a four-month period, from June through September 2005. This collection contains two sets of travel data: 1) a survey of 1,220 permanent households within the Tahoe Basin region and 2) a subset survey of 125 seasonal households within the same area. The permanent resident dataset contains information about 2,732 household members, 2,471 vehicles, and 11,048 trips made during a 24-hour period. The seasonal resident subset features 726 trip observations and information about 229 household members and 185 vehicles. The survey relied on the willingness of study area residents to 1) provide demographic information about their household, its members, and its vehicles and 2) document all travel for each household member, regardless of age, over an assigned 24-hour period. During the recruitment phase, respondents were asked to provide detailed household information, including permanent or seasonal resident status, number of household occupants, type of dwelling unit, number of vehicles available to household members, as well as the year, body type, and fuel type of each vehicle. Survey participants received mailed travel logs to aid in documenting travel information for the 24-hour assessment period. Respondents were instructed to record their mode of transportation, trip purpose, number of passengers, departure and arrival times, activities at each trip destination, ride fare, and parking costs. Demographic information for this study includes age, gender, income, education, and employment status.

1Hz data↗