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At least 1,405 records · Page 78

A hierarchical analysis of the impact of methodological decisions on statistical downscaling of daily precipitation and air temperatures

Despite the widespread application of statistical downscaling tools, uncertainty remains regarding the role of model formulation in determining model skill for daily maximum and minimum temperature (Tmax and Tmin), and precipitation occurrence and intensity. Impacts of several key aspects of statistical transfer function form on model skill are evaluated using a framework resistant to model overspecification. We focus on: (a) model structure: simple (generalized linear models, GLMs) versus complex (artificial neural networks, ANNs) models. (b) Predictor selection: Fixed number of predictors chosen a priori versus stepwise selection of predictors and inclusion of grid point values versus predictors derived from application of principal components analysis (PCA) to spatial fields. We also examine the influence of domain size on model performance. For precipitation downscaling, we consider the role of the threshold used to characterize a wet day and apply three approaches (Poisson and Gamma distributions in GLM and ANN) to downscale wet-day precipitation amounts. While no downscaling formulation is optimal for all predictands and at 10 locations representing diverse U.S. climates, and due to the exclusion of variance inflation all of the downscaling formulations fail to reproduce the range of observed variability, models with larger suites of prospective predictors generally have higher skill. For temperature downscaling, ANNs generally outperform GLM, with greater improvements for T min than T max . Furthermore, use of PCA-derived predictors does not systematically improve model skill, but does improve skill for temperature extremes. Model skill for precipitation occurrence generally increases as the wet-day threshold increases and models using PCA-derived predictors tend to outperform those based on grid cell predictors. Each model for wet-day precipitation intensity overestimates annual total precipitation and underestimates the proportion derived from extreme precipitation events, but ANN-based models and those with larger predictor suites tend to have the smallest bias.

54 ENVIRONMENTAL SCIENCES↗

STEPS: A Grid Search Methodology for Optimized Peptide Identification Filtering of MS/MS Database Search Results

For bottom-up proteomics there are a wide variety of database searching algorithms in use for matching peptide sequences to tandem MS spectra. Likewise, there are numerous strategies being employed to produce a confident list of peptide identifications from the different search algorithm outputs. Here we introduce a grid search approach for determining optimal database filtering criteria in shotgun proteomics data analyses that is easily adaptable to any search. Systematic Trial and Error Parameter Selection - referred to as STEPS - utilizes user-defined parameter ranges to test a wide array of parameter combinations to arrive at an optimal "parameter set" for data filtering, thus maximizing confident identifications. The benefits of this approach in terms of numbers of true positive identifications are demonstrated using datasets derived from immunoaffinity-depleted blood serum and a bacterial cell lysate, two common proteomics sample types.

Environmental Molecular Sciences Laboratory↗

Impact of genotype‐calling methodologies on genome‐wide association and genomic prediction in polyploids

Abstract Discovery and analysis of genetic variants underlying agriculturally important traits are key to molecular breeding of crops. Reduced representation approaches have provided cost‐efficient genotyping using next‐generation sequencing. However, accurate genotype calling from next‐generation sequencing data is challenging, particularly in polyploid species due to their genome complexity. Recently developed Bayesian statistical methods implemented in available software packages, polyRAD, EBG, and updog, incorporate error rates and population parameters to accurately estimate allelic dosage across any ploidy. We used empirical and simulated data to evaluate the three Bayesian algorithms and demonstrated their impact on the power of genome‐wide association study (GWAS) analysis and the accuracy of genomic prediction. We further incorporated uncertainty in allelic dosage estimation by testing continuous genotype calls and comparing their performance to discrete genotypes in GWAS and genomic prediction. We tested the genotype‐calling methods using data from two autotetraploid species, Miscanthus sacchariflorus and Vaccinium corymbosum , and performed GWAS and genomic prediction. In the empirical study, the tested Bayesian genotype‐calling algorithms differed in their downstream effects on GWAS and genomic prediction, with some showing advantages over others. Through subsequent simulation studies, we observed that at low read depth, polyRAD was advantageous in its effect on GWAS power and limit of false positives. Additionally, we found that continuous genotypes increased the accuracy of genomic prediction, by reducing genotyping error, particularly at low sequencing depth. Our results indicate that by using the Bayesian algorithm implemented in polyRAD and continuous genotypes, we can accurately and cost‐efficiently implement GWAS and genomic prediction in polyploid crops.

59 BASIC BIOLOGICAL SCIENCES↗

Identifying preferential flow from soil moisture time series: Review of methodologies

Abstract Identifying and quantifying preferential flow (PF) through soil—the rapid movement of water through spatially distinct pathways in the subsurface—is vital to understanding how the hydrologic cycle responds to climate, land cover, and anthropogenic changes. In recent decades, methods have been developed that use measured soil moisture time series to identify PF. Because they allow for continuous monitoring and are relatively easy to implement, these methods have become an important tool for recognizing when, where, and under what conditions PF occurs. The methods seek to identify a pattern or quantification that indicates the occurrence of PF. Most commonly, the chosen signature is either (1) a nonsequential response to infiltrated water, in which soil moisture responses do not occur in order of shallowest to deepest, or (2) a velocity criterion, in which newly infiltrated water is detected at depth earlier than is possible by nonpreferential flow processes. Alternative signatures have also been developed that have certain advantages but are less commonly utilized. Choosing among these possible signatures requires attention to their pertinent characteristics, including susceptibility to errors, possible bias toward false negatives or false positives, reliance on subjective judgments, and possible requirements for additional types of data. We review 77 studies that have applied such methods to highlight important information for readers who want to identify PF from soil moisture data and to inform those who aim to develop new methods or improve existing ones. Core Ideas Soil moisture data can be used to identify the occurrence of preferential flow (PF) and its initiating conditions. Various data‐analysis methods to identify PF differ in susceptibility to error, bias, and subjectivity. These methods can utilize vast amounts of data from soil moisture monitoring networks to develop understanding of when, where, and under what conditions PF occurs. Newly developed methods may lead to better accuracy and reliability, and reduce the need for subjective judgments. Plain Language Summary Preferential flow through soil occurs when a large amount of water is suddenly available, as during an intense storm. This type of flow moves rapidly through the soil in distinct narrow pathways rather than moving evenly throughout the body of soil, with major consequences for groundwater resources, ecosystems, spreading of contaminants, and other vital concerns. Methods of detecting preferential flow have been developed that utilize measurements of soil water content made by sensors installed at various depths. This measurement technology has been widely implemented, many locations now having datasets years in length, and various methods have been developed for using these to identify preferential flow. The various methods are based on different features in the soil moisture records and vary in their advantages and shortcomings. In this review, we explain and evaluate these methods, highlighting important information for their implementation to identify preferential flow from soil moisture data and for efforts to develop new methods or improve existing ones.

Nimmo, John R↗

Computational Methodology to Simulate Pyrometallurgical Processes in a Secondary Lead Furnace

Pyrometallurgical recovery of nonferrous metals involves a combination of thermally intensive transformations during exothermic gas-phase reactions, endothermic decomposition of solid charge, and melting of simpler solids. In the recovery of secondary lead, simultaneous thermal effects in a reverberatory-style furnace cause a melt pool to accumulate at the bottom, with lighter solids (slag) floating above and gaseous products from decomposition of the charge diffusing through the gas–slag interface. Species from oxy-fuel combustion of natural gas, species profiles from smelting reactions, and the formation of a melt pool consisting primarily of lead are simulated via a time-averaged formulation. Predictions of outflow are compared with preset inflow profiles to ensure conservation of mass. Thermal profiles for solid, liquid, and gas phases are presented by species. A novel method is implemented to model the latent heat of fusion using a heterogeneous chemical reaction. The simulation is conducted in Simcenter STAR-CCM+ v. 16.02.009-R8.

Rao, Vivek↗

Methodologies and strategies for detecting fiber orientation in polymeric fiber-reinforced composites

In this review paper different methods and techniques for representing fiber orientation in advanced polymer matrix composites are presented. A description of the effect of fiber orientation on processing, fabrication and mechanical properties of a composite material is presented. The paper discusses the mathematical modeling and modeling techniques for fiber structure representation in polymeric composites, with an emphasis on fiber orientation in a composite part. The paper is divided into two sections; namely—destructive techniques and non-destructive techniques. The capabilities and limitations of each technique with respect to fiber orientation detection and measurements are discussed.

composites↗

Acoustic Emission-Based Methodology to Evaluate Delamination Crack Growth Under Quasi-static and Fatigue Loading Conditions

The aim of this study was to investigate the applicability of acoustic emission (AE) technique to evaluate delamination crack in glass/epoxy composite laminates under quasi-static and fatigue loading. To this aim, double cantilever beam specimens were subjected to mode I quasi-static and fatigue loading conditions and the generated AE signals were recorded during the tests. By analyzing the mechanical and AE results, an analytical correlation between the AE energy with the released strain energy and the crack growth was established. It was found that there is a 3rd degree polynomial correlation between the crack growth and the cumulative AE energy. Using this correlation the delamination crack growth was predicted under both the static and fatigue loading conditions. The predicted crack growth values was were in a good agreement with the visually recorded data during the tests. The results indicated that the proposed AE-based method has good applicability to evaluate the delamination crack growth under quasi-static and fatigue loading conditions, especially when the crack is embedded within the structure and could not be seen visually.

42 ENGINEERING↗

Modelling and Optimization of Uranium (VI) Ions Adsorption Onto Nano-ZnO/Chitosan Bio-composite Beads with Response Surface Methodology (RSM)

Nano-ZnO-chitosan bio-composite beads were prepared for the sorption of UO{sub 2}{sup 2+} from aqueous media. The resulting nano-ZnO/CTS bio-composite beads were characterized by TEM, XRD etc. The sorption of UO{sub 2}{sup 2+} by bio-composite beads was optimized using RSM. The correlation between four variables was modelled and studied. According to RSM data, correlation coefficients (R{sup 2} = 0.99) and probability F-values (F = 2.24 × 10{sup − 10}) show that the model fits the experimental data well. Adsorption capacity for nano-ZnO/CTS bio-composite beads was obtained at 148.7 mg/g under optimum conditions. The results indicate that nano-ZnO/CTS bio-composite beads are appropriate for the adsorption of UO{sub 2}{sup 2+} ions from aqueous media. Also, the suitability of adsorption values to adsorption isotherms was researched and thermodynamic data were calculated.

77 NANOSCIENCE AND NANOTECHNOLOGY↗

Highly Efficient Removal of Lead Ions from Aqueous Solutions Using Chitosan/Rice Husk Ash/Nano Alumina with a Focus on Optimization by Response Surface Methodology: Isotherm, Kinetic, and Thermodynamic Studies

In the present study, an adsorbent named chitosan/rice husk ash/nano-γ alumina was prepared and used for the removal of lead ions from aqueous solutions. It was characterized by FESEM, FTIR, XRD, and BET. The important and interactive effects of some considered parameters, such as the initial lead ion concentration, pH, adsorbent mass and contact time, were estimated and optimized by using the central composite design (CCD). The Maximum adsorption efficiency of lead ions under optimum conditions, including the pH of 5, adsorbent mass of 0.01 g, the initial lead ion concentration of 30 ppm, and the contact time of 105 min, was achieved to be 90.98%. The adsorption kinetic was consistent with the pseudo-second-order model (R{sup 2} = 0.9967). The lead adsorption isotherms were well fitted to the Langmuir model, indicating the maximum adsorption capacity of 181.82 mg g{sup −1}. Thermodynamic parameters (R{sup 2}: 0.9200, ΔH°: − 22871.81 kJ mol{sup −1}, ΔG{sup °}: − 10.63 kJ mol{sup −1}, and ΔS{sup °}: 118.37 kJ mol{sup −1} K{sup −1}) were calculated and indicating adsorption process was exothermic and spontaneous in the temperature range of 283.15–313.15 k. The maintenance above 70% capacity of the adsorbent was observed by the regeneration study of chitosan/rice husk ash/nano-γ alumina after six cycles. Comparison of adsorption efficiency of the studied adsorbent and other adsorbents in the removal of lead ions was also done in this paper. Consequently, the excellent properties of the presented nanocomposite could make it an ideal adsorbent for the removal of lead ions from aqueous solutions. Graphical Abstract: .

77 NANOSCIENCE AND NANOTECHNOLOGY↗

Age-dating methodology for 137 Cs ceramic sources

Here, age-dating of 137 Cs ceramic sources is shown to be a viable technology for nuclear forensics investigations. The 137 Cs age-dating method in general, however, could be substantially improved by using radiometric rather than ICP-MS measurement of the 137 Cs isotope and by refining the Cs/Ba separation process. With these improvements, uncertainty in the age of a 60-year-old source decreases from 1.35 to 0.68 y.

137Cs ceramic↗

Cross-Linking and Mass Spectrometry Methodologies to Facilitate Structural Biology: Finding a Path through the Maze

Multiprotein complexes, rather than individual proteins, make up a large part of the biological macromolecular machinery of a cell. Understanding the structure and organization of these complexes is critical to understanding cellular function. Chemical cross-linking coupled with mass spectrometry is emerging as a complementary technique to traditional structural biology methods and can provide low-resolution structural information for a multitude of purposes, such as distance constraints in computational modeling of protein complexes. In this review, we discuss the experimental considerations for successful application of chemical cross-linking-mass spectrometry in biological studies and highlight three examples of such studies from the recent literature. These examples (as well as many others) illustrate the utility of a chemical cross-linking-mass spectrometry approach in facilitating structural analysis of large and challenging complexes.

Environmental Molecular Sciences Laboratory↗

A Review of Methodology Development for Controlling Loss of Alloying Elements During the Electroslag Remelting Process

Electroslag remelting (ESR) is an advanced secondary refining technology for the production of clean, fully dense, and homogeneous castings of steels and alloys by removal of undesirable elements and nonmetallic inclusions. However, because of some potential reactions between reactive elements, i.e., Al and Ti, in liquid metal and oxygen as well as weak oxides, such as FeO and SiO{sub 2}, in slag during the ESR process, it is impossible to hold those oxidative elements within specification or to maintain them uniformly from the bottom to top of the resultant ingot. According to a literature survey, recent fundamental research on the oxidation behaviors of Al and Ti in nickel-based alloy by ESR-type slag is scarce. Therefore, summarizing previous knowledge on the controlling loss reactive elements during ESR of Fe- and Ni-based alloys in view of thermodynamics and kinetics is in order to increase the basic understanding of the reaction mechanism between those elements and oxygen and weak oxides in the slag, which can guide the development of a new remelting technique that retards the oxidation of Al and Ti in Inconel 718 alloys during the ESR process. The presence of impurity elements, such as oxygen and sulfur, can also deteriorate the mechanical properties of metal products. Therefore, the inter-related literature about desulfurization during the ESR process is also reviewed in this article.

36 MATERIALS SCIENCE↗